chemistry
biology
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README.md CHANGED
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  ---
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  license: apache-2.0
 
 
 
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  ---
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  license: apache-2.0
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+ tags:
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+ - chemistry
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+ - biology
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  ---
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+ # ByteFF2
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+
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+ This repository contains the model used for the paper [Bridging Quantum Mechanics to Organic Liquid Properties via a Universal Force Field](https://arxiv.org/abs/2508.08575)。
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+
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+ [ByteFF-Pol](https://arxiv.org/abs/2508.08575) is a polarizable force field parameterized by a graph neural network (GNN), trained on high-level quantum mechanics (QM) data, thus eliminating the need for experimental calibration. ByteFF-Pol achieves exceptional accuracy in predicting the thermodynamic and transport properties of small-molecule liquids and electrolytes, outperforming SOTA traditional and ML force fields
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+
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+ # Trained Models
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+ The `trained_models`` folder contains the trained model for ByteFF-Pol and its corresponding configuration (.yaml) file.
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+
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+ # How to use
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+ Code and examples are available in the [byteff2](https://github.com/ByteDance-Seed/byteff2) repository.
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+
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+ ## Citation
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+ If you find ByteFF-Pol is useful for your research and applications, feel free to give us a star ⭐ or cite us using:
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+
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+ ```bibtex
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+
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+ @misc{zheng2025bridgingquantummechanicsorganic,
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+ title = {Bridging Quantum Mechanics to Organic Liquid Properties via a Universal Force Field},
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+ author = {Tianze Zheng and Xingyuan Xu and Zhi Wang and Xu Han and Zhenliang Mu and Ziqing Zhang and Sheng Gong and Kuang Yu and Wen Yan},
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+ year = {2025},
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+ eprint = {2508.08575},
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+ archivePrefix = {arXiv},
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+ primaryClass = {physics.comp-ph},
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+ url = {https://arxiv.org/abs/2508.08575}
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+ }
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+ ```
trained_models/fftrainer_config_in_use.yaml ADDED
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+ model:
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+ ff_block:
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+ - act: gelu
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+ out_mlp_dims:
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+ - 256
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+ - 4
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+ post_mlp_dims:
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+ - 256
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+ - 256
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+ - 1
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+ pre_mlp_dims:
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+ - 256
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+ - 256
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+ - 3
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+ tanh_output: 20.0
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+ type: MMBondedConj
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+ - act: gelu
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+ out_mlp_dims:
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+ - 256
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+ - 3
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+ pre_mlp_dims:
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+ - 256
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+ - 256
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+ - 3
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+ type: ChargeVolume
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+ - act: gelu
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+ charge14: 0.5
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+ disp_damping_factor: 120.0
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+ fix_li_alpha: 1.0e-06
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+ ind14: 0.5
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+ li_damp_clip: 0.2
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+ out_mlp_dims:
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+ - 256
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+ - 3
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+ pol_damping_factor: 0.39
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+ pre_mlp_dims:
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+ - 256
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+ - 256
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+ - 3
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+ s12: 1.5
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+ type: Exp6Pol
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+ vdw14: 0.5
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+ graph_block:
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+ feature_layer:
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+ act: gelu
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+ atom_embedding_dim: 32
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+ edge_mlp_dims:
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+ - 64
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+ - 256
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+ - 2
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+ node_mlp_dims:
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+ - 64
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+ - 256
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+ - 2
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+ gnn_layer:
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+ act: gelu
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+ at_channels: 16
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+ ffn_dims:
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+ - 256
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+ - 2
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+ gnn_dims:
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+ - 256
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+ - 256
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+ - 4
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+ gnn_type: EGT
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+ heads: 16
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+ jk: cat
trained_models/optimal.pt ADDED
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:ae47a6e6860b563908a2e0a83d4a3f6adc1c36b48f544e2241d24066d43d539c
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+ size 111892932