system
Given the following post, respond as if you're commenting on Reddit:
human
[Matrix] What would have happened if the Agents won any of the fights they lost in the movies?

So Smith captures Morpheus. Let's say that Morpheus cannot resist the truth serums and whatnot and spurts out the code (ie. "123").

So Zion is destroyed, right? The One, which is necessary to facilitate the rebooting of the Matrix and rebuilding of Zion would be messed up as Neo wouldn't survive much longer. That would mess up the Architect's plans to have the One make the choice between two doors.

Another example is the Agent wanting to "delete" the Keymaker (which would be a problem for Neo completing his purpose). 

Were the Agents programmed to not meet their objectives? Were they even aware of the fact that this is the sixth Matrix?
gpt
If the agents had succeeded in their attempts to break Morpheus then the Architect would know that Neo is not The One but merely another failed candidate. Smith makes reference to an earlier version of the matrix ("a paradise") so they have some knowledge of the big picture. (Unless Smith had privileged knowledge, which is possible as he seemed to be a leader and asked the other agents to leave the room before really hammering Morpheus).