system
Given the following post, respond as if you're commenting on Reddit:
human
[Star Wars] So what are the limits of order 66?

I'm thinking more of the long term applications of order 66. How 'hard coded' is it? Did the order only apply for a certain length of time or until it was called off? 

Say five years after the war ended an Imperial officer wanted a jedi captured instead of killed. Would the stormtrooper clones under his command disobey the order and kill the jedi then and there? If the officer stood in front of the jedi, would the clones gun him down as well?

Scaling it up, would high ranking clones divert resources and personnel to certain planets if a jedi was suspected to reside there? Would they try and keep it a secret from non clones if it resulted in a better chance of success?

Would a clone try to kill a jedi as soon as possible, even if there was a very low chance of success? Say a lone stormtrooper on patrol recognises a powerful jedi like obi wan, would he take a shot there or call in support to organise an ambush?

If the Empire (miraculously) declared all jedi innocent and encouraged a rebuilding of the order (assuming Vader and palps died in a freak accident) would the clones still be on a rampage until the end of their days? 

I know a lot of this can't really be answered definitively, but I thought it would be fun to speculate.
gpt
It's a one time trance state specifically initiated by Palpatine's message in Revenge of the Sith. Afterwards the clones who were brainwashed believed the official story and continued to hunt Jedi while not under the mind control chip's influence, but some clones later realized they had been controlled.

But it wouldn't matter five years later, since  Imperial Officers of that time didn't have clones under their command. The Emperor was dissatisfied with clone troopers because of the individuality the Jedi had taught them, and turned to patriotic recruits to create the faceless army he wanted.