{'fraction_non_alphanumeric': 0.0434508188552636, 'fraction_numerical': 0.025213433877022223, 'mean_word_length': 4.873951219512195, 'pattern_counts': {'":': 0, '<': 0, '<?xml version=': 0, '>': 0, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
NGL-1/LRRC4C Deletion Moderately Suppresses Hippocampal Excitatory Synapse Development and Function in an Input-Independent Manner

Netrin-G ligand-1 (NGL-1), also known as LRRC4C, is a postsynaptic densities (PSDs)-95-interacting postsynaptic adhesion molecule that interacts trans-synaptically with presynaptic netrin-G1. NGL-1 and its family member protein NGL-2 are thought to promote excitatory synapse development through largely non-overlapping neuronal pathways. While NGL-2 is critical for excitatory synapse development in specific dendritic segments of neurons in an input-specific manner, whether NGL-1 has similar functions is unclear. Here, we show that Lrrc4c deletion in male mice moderately suppresses excitatory synapse development and function, but surprisingly, does so in an input-independent manner. While NGL-1 is mainly detected in the stratum lacunosum moleculare (SLM) layer of the hippocampus relative to the stratum radiatum (SR) layer, NGL-1 deletion leads to decreases in the number of PSDs in both SLM and SR layers in the ventral hippocampus. In addition, both SLM and SR excitatory synapses display suppressed short-term synaptic plasticity in the ventral hippocampus. These morphological and functional changes are either absent or modest in the dorsal hippocampus. The input-independent synaptic changes induced by Lrrc4c deletion involve abnormal translocation of NGL-2 from the SR to SLM layer. These results suggest that Lrrc4c deletion moderately suppresses hippocampal excitatory synapse development and function in an input-independent manner.

Intriguingly, NGL-1 and NGL-2 are distributed to specific dendritic segments in the same neuron that receive inputs from different axons. Specifically, NGL-1 is distributed to the distal dendrites of CA1 pyramidal neurons in the stratum lacunosum moleculare (SLM) layer of the hippocampus that receive synaptic inputs from entorhinal cortex (EC) layer III neurons through the temporoammonic-CA1 neuronal (TA-CA1) pathway, whereas NGL-2 is mainly distributed to the proximal dendrites of CA1 pyramidal neurons in the stratum radiatum (SR) layer that receives inputs from CA3 pyramidal neurons through the Schaffer collateral-CA1 (SC-CA1) pathway Nishimura-Akiyoshi et al., 2007). However, whether NGL-3 displays a similar laminar-specific localization remains unclear.
Functionally, Lrrc4 (or NGL-2) deletion in mice suppresses excitatory synapse development and synaptic transmission in SC-CA1 synapses in an input-specific manner with synaptic changes occurring specifically in the NGL-2-enriched SC-CA1 pathway but not in the NGL-2-non-enriched TA-CA1 pathway (DeNardo et al., 2012;Um et al., 2018), although a different result (no effect) has also been reported (Matsukawa et al., 2014). However, apart from a reported effect on post-tetanic potentiation (PTP) in the TA-CA1 pathway (Matsukawa et al., 2014), whether deletion of Lrrc4c (or NGL-1) in mice leads to similar input-specific deficits in synapse development and function, for instance, in the TA-CA1 pathway relative to the SC-CA1 pathway, remains unclear.
In the present study, we examined the impacts of Lrrc4c deletion on hippocampal synapses in mice and found that Lrrc4c deletion modestly suppresses hippocampal synapse development and function in an input-independent manner with synaptic changes occurring in both NGL-1-enriched TA-CA1 and NGL-1-non-enriched SC-CA pathways.

Animals
The Lrrc4c −/− mice used in this study have been previously described (Um et al., 2018). Briefly, Lrrc4c −/− mice (LRRC4C tm1Lex ), obtained from The Mutant Mouse Resource and Research Center, were generated by introducing an NGL-1 targeting vector into 129/SvEvBrd-derived embryonic stem (ES) cells by homologous recombination, thereby replacing the third exon of the Lrrc4c gene encoding NGL-1 with a β-geo (LacZ/neo) cassette. These mice were mated with C57BL/6J albino mice, and the resulting F1 heterozygous mice were crossed with C57BL/6J mice for more than five generations to obtain Lrrc4c −/− mice in a C57BL/6J background. Mice were weaned at postnatal day 21, and mixed-genotype littermates of the same sex were housed together until experiments. All animals were fed ad libitum and housed under a 12-h light/dark cycle (light phase from 1:00 to 13:00). Mouse maintenance and procedures were performed in accordance with the Requirements of Animal Research at KAIST, and all procedures were approved by the Committee of Animal Research at KAIST (KA2012-19). For genotyping, the following primers were used. WT-for: GAACAAGATGACCTTACATCC, WT-rev: CAATAGGGTTGTTCCTCAACCAG, mut-for: CCCT AGGAATGCTCGTCAAGA, and mut-rev: CAGACTGTTTGA ACTCCAGAAG (WT band size: 476 base pairs, mut band size: 289 base pairs).

LacZ Staining
Mice were deeply anesthetized with isoflurane before the procedure. Brains were isolated from male mice (3 weeks old) after cardiac perfusion (4% paraformaldehyde or PFA). After post-fixation for 2 h, brain sections (250 µm) were obtained by vibratome (VT1200s, Leica). Brain sections were washed three times with 1× phosphate buffered saline (PBS) for 10 min and immersed in X-gal staining buffer (5 mM potassium hexacyanoferrate III (K3), 5 mM potassium hexacyanoferrate II trihydrate (K4), 2 mM MgCl 2 , 0.01% deoxycholate, 0.02% NP40, and 1 mg/ml X-gal in 1× PBS) for 3-5 h at room temperature. During the staining, the sample was kept out from the light since X-gal is light-sensitive. After staining, it was washed thoroughly for 10 min five times. Before the mounting with Vectashield (Vectorlabs), the sample was fixated for 30 min and washed again for 5 min with 1× PBS. Imaging was performed by light microscopy.

Electron Microscopy
WT and Lrrc4c −/− mice were deeply anesthetized with sodium pentobarbital (80 mg/kg, i.p.) and were intracardially perfused with 10 ml of heparinized normal saline, followed by 50 ml of a freshly prepared fixative of 2.5% glutaraldehyde and 1% PFA in 0.1 M phosphate buffer (PB, pH 7.4). Hippocampus was removed from the whole brain, postfixed in the same fixative for 2 h and stored in PB (0.1 M, pH 7.4) overnight at 4 • C. Sections were cut coronally or horizontally on a Vibratome at 50 µm. The sections were osmicated with 1% osmium tetroxide (in 0.1 MPB) for 1 h, dehydrated in graded alcohols, flat embedded in Durcupan ACM (Fluka), and cured for 48 h at 60 • C. Small pieces containing SR and stratum lacunosum-moleculare (SLM) of dorsal and ventral hippocampal CA1 regions were cut out of the wafers and glued onto the plastic block by cyanoacrylate. We dissected out the hippocampus and cut it in half in the middle of the septotemporal axis to obtain the dorsal and ventral hippocampus. We then used the middle region of the dorsal or ventral hippocampus for electron microscopy (EM) analysis. Ultrathin sections were cut and mounted on Formvar-coated single-slot grids. For quantification of excitatory synapse, sections were stained with uranyl acetate and lead citrate, and examined with an electron microscope (Hitachi H-7500; Hitachi) at 80 kV accelerating voltage. Twenty-four micrographs representing 368.9 µm 2 neuropil regions in each mouse were photomicrographed at a 40,000× and used for quantification. Number of spines (PSD density), proportion of perforated spines, PSD length and PSD thickness from three WT and Lrrc4c −/− mice were quantified. The measurements were all performed by an experimenter blind to the genotype. Digital images were captured with GATAN DigitalMicrograph software driving a CCD camera (SC1000 Orius; Gatan) and saved as TIFF files. Brightness and contrast of the images were adjusted in Adobe Photoshop 7.0 (Adobe Systems).

Immunoblot Analysis
Whole-brain were homogenized by motorized tissue grinder in ice-cold homogenization buffer (0.32 M sucrose, 10 mM HEPES, 2 mM EDTA, 2 mM EGTA containing protease and phosphatase inhibitors). For subcellular fractionations, the homogenates were centrifuged at 900 g for 10 min (the resulting pellets are P1). The resulting supernatants were centrifuged again at 12,000 g for 15 min (the supernatants are S2). The pellets were resuspended in homogenization buffer and centrifuged at 13,000 g for 15 min (the resulting pellets are P2 or crude synaptosomes). Each fraction was lysed in 2× SDS lysis buffer and boiled for 15 min.
For microdissection of SR and SLM samples, ventral hippocampal CA1 sections (400 µm) were sliced in sCSF with vibratome (VT1200s, Leica). Under light microscopy, SR and SLM regions, which are readily discernable by their different darkness (SLM is darker), were manually dissected on an ice-cold platform, and four animals were pooled for one sample. Each sample was homogenized in 60-80 µl of ice-cold homogenization buffer and the whole lysates were used without any further fractionation. Total of 32 of adult (2-3 months) male mice were used to make n number of eight pairs by pooling four pairs of mice. The band was analyzed using Odyssey imaging program.

Brain Slices for Electrophysiology
Acute horizontal brain slices were obtained by anesthetizing 2-4month-old adult male mice with isoflurane (Terrell, Piramal Critical Care) and extracting the brain into a 0 • C dissection buffer consisting of, in mM: 212 sucrose, 25 NaHCO 3 , 5 KCl, 1.25 NaH 2 PO 4 , 10 D-glucose, 2 sodium pyruvate, 1.2 sodium ascorbate, 3.5 MgCl 2 , 0.5 CaCl 2 and bubbled with 95% O 2 /5% CO 2 . The dorsal part of the brain was fixated with cyanoacrylate glue onto a triangular agar gel with a 12-degree angle and transferred to a vibratome (VT1200s, Leica), where horizontal brain sections were obtained (Remondes and Schuman, 2002). To obtain dorsal hippocampal sections, hemi-sectioned brains were glued along the midline surface. Brains were sliced at a thickness of 400 µm, and resulting slices were transferred to a 32 • C holding chamber containing a solution of artificial cerebrospinal fluid (aCSF; in mM: 125 NaCl, 25 NaHCO 3 , 2.5 KCl, 1.25 NaH 2 PO 4 , 10 D-glucose, 1.3 MgCl 2 , 2.5 CaCl 2 ). Slices were recovered at 32 • C for 1 h, and afterward further recovered in room temperature (20-25 • C) for 30 min. Once recovery was finished, slices were transferred to a recording chamber, where all electrophysiological experiments were performed at 28 • C with circulating aCSF. Cells were visualized under differential interference contrast illumination in an upright microscope (B50WI, Olympus).

Field Recording
For field EPSP (fEPSP) recordings, baseline responses were collected at 0.07 Hz with a stimulation intensity that yielded a half-maximal response. Once a stable baseline response was acquired, excitatory transmissions were evoked at a set series of increasing stimuli using an isolated pulse stimulator (A-M Systems). fEPSP slopes and fiber volleys were then interpolated via linear fits to obtain an input/output model of basal evoked excitatory transmissions. For paired-pulse facilitation, pairs of peak amplitude responses were obtained at indicated inter-pulse intervals and divided to obtain the PPF ratios for each inter-pulse interval. For release probability, a single 20 Hz, 5-s stimulation was given in the presence of 2 µM kynurenic acid (Tocris), and 0.05 µM cyclothiazide (Tocris). Signals were filtered at 2 kHz and digitized at 1 kHz under control of Multiclamp 700B Amplifier and Digidata 1550 Digitizer. The acquired data were analyzed using Clampfit 10. theta burst stimulation (TBS)long-term potentiation (LTP) was induced by four episodes of TBS with 10 s intervals. TBS consisted of 10 stimulus trains delivered at 5 Hz; each train consisted of four pulses at 100 Hz. High-frequency stimulation (HFS)-LTP was induced by a single delivery of a 100 Hz, 1-s stimulus. Average responses (±SEM) are expressed as percentages of baseline responses.

Experimental Design and Statistical Analysis
All quantitative analyses were performed using age-matched WT (C57BL/6J) and Lrrc4c −/− mice. For EM, six frames were imaged for each animal, and each frame was taken as an ''n'' of 1. For electrophysiological analyses, three to five animals were used in each experiment. Normality and equal variance were tested for all statistical analysis using D'Agostino-Pearson omnibus normality test. Sample size was determined by the nature of the experimental design. Statistical tests were performed using Prism 5 (GraphPad) and SigmaPlot 12.0 (Systat Software). Two-way analysis of variance (ANOVA) was performed for tests of both genotype and any additional factors; Holm-Sidak multiple comparison post hoc analyses were performed only when either the interaction or both main factors were significant.

Generation and Basic Characterization of
To understand in vivo functions of NGL-1, we generated Lrrc4c-knockout (KO) mice (Lrrc4c −/− mice) by replacing exon 3 of the Lrrc4c gene encoding the entire NGL-1 protein with a β-geo cassette through homologous recombination ( Figure 1A). KO of NGL-1 in Lrrc4c −/− mice was validated at the DNA and protein level by polymerase chain reaction (PCR) and Western blotting, respectively (Figures 1B,C).
Because the coding region was replaced with a β-geo cassette expressing β-galactosidase, the putative expression pattern of the NGL-1 protein in the mouse brain could be observed by X-gal staining without the requirement for specific antibodies, which often cross-react with other antigens. For comparison, parallel experiments were performed using another mouse line in which the β-geo cassette replaced the NGL-2 (Lrrc4) gene (Um et al., 2018).
NGL-1 and NGL-2 signals were detected in various overlapping and distinct mouse brain regions. The overlapping regions included the cortex, hippocampus, striatum, and amygdala ( Figure 1D). NGL-1 signals were stronger than those of NGL-2 in certain regions, including the thalamic reticular nucleus (TRN), hypothalamus and habenula, whereas NGL-2 signals were stronger in the cerebellum.
Enlarged images showed that NGL-1 signals were particularly strong in layer 4 of the somatosensory cortex (Figures 1E,F).
In the hippocampus, NGL-1 signals were stronger in the CA1 region relative to other subregions of the dorsal and ventral hippocampus (Figures 1G,H). NGL-1 signals were also detected in other brain regions, including the medial habenula (MH), superior and inferior colliculus (SC and IC), and lateral septum (LS; Figures 1I-L).
Decreased PSD Density in SR and SLM Layers of the Lrrc4c −/− Ventral CA1 Region It has been shown that NGL-1 expressed in CA1 neurons is targeted to and maintained at the SLM layer through transsynaptic interactions with presynaptic netrin-G1 . Conversely, presynaptic localization of netrin-G1 has been shown to require postsynaptic NGL-1 (Matsukawa et al., 2014). These results suggest that the transsynaptic interaction between NGL-1 and netrin-G1 is important for their synaptic localization in the SLM as well as excitatory synapse development and function in this region. We, therefore, tested whether Lrrc4c deletion affected the density of excitatory synapses by analyzing PSDs apposed to presynaptic axon terminals in both SR and SLM layers of the CA1 region using EM (Figure 2A).
There were moderate decreases in the density of PSDs in both SR and SLM layers of the ventral CA1 region (Figures 2B,D). Similar trends were observed in the dorsal CA1 region, but these changes did not reach statistical significance ( Figure 2C). Other parameters of the PSD, such as PSD perforation (measure of maturation), length and thickness, in SR or SLM layers of dorsal or ventral CA1 regions were not different between genotypes, although the percentage of perforated PSDs was greater in the SLM layer relative to the SR layer (Figures 2E-J), as previously reported (Nicholson et al., 2006). These results suggest that Lrrc4c deletion leads to a moderate reduction in the number of excitatory synapses in both SR and SLM layers of the ventral, but not dorsal, CA1 region.

Normal Spontaneous and Basal Synaptic Transmission in the Lrrc4c −/− Hippocampus
To determine if the moderate decrease in PSD density in the ventral hippocampus of Lrrc4c −/− mice influences synaptic transmission, we first measured spontaneous synaptic transmission in CA1 pyramidal neurons in the morphologically altered ventral hippocampus.
We found that both the frequency and amplitude of mEPSCs and mIPSCs were normal in Lrrc4c −/− CA1 neurons compared with those in WT neurons (Figures 3A,B). In addition, spontaneous EPSCs and IPSCs (sEPSCs and sIPSCs), which reflect local circuit activities, were also unaffected (Figures 3C,D). Intrinsic properties were normal in Lrrc4c −/− CA1 neurons, as shown by comparing resting membrane potential, input resistance, sag ratio, and current-firing curves in neurons from these mice with those of WT neurons (Figures 3E-I). These results suggest that Lrrc4c deletion does not induce changes in spontaneous synaptic transmission or intrinsic neuronal properties in ventral CA1 neurons.
However, these whole-cell recordings might fail to detect dendritic layer-specific changes in synaptic transmission, such as those occurring at NGL-1-enriched TA-CA1 synapses in the SLM layer, which might dissipate while traveling the distance from the SLM layer to the cell body or could experience interference from unaffected inputs at SC-CA1 synapses in the SR layer. However, both Lrrc4c −/− TA-CA1 and SC-CA1 pathways displayed normal basal synaptic transmission in ventral and dorsal CA1 regions (Figures 4A-D). Furthermore, paired-pulse facilitation was unaffected in these pathways (Figures 4E-H), suggestive of normal presynaptic release. These results collectively suggest that Lrrc4c deletion does not affect

Suppression of Short-Term Synaptic Plasticity in Lrrc4c −/− TA-CA1 and SC-CA1 Pathways
Although spontaneous and basal transmissions were not affected in the Lrrc4c −/− hippocampus, Lrrc4c deletion might affect synaptic plasticity. We thus next tested changes in synaptic plasticity by measuring LTP induced by TBS or HFS. The Lrrc4c −/− hippocampus displayed normal TBS-LTP and HFS-LTP in the SC-CA1 pathway in the ventral CA1 region (Figures 5A-D). fEPSP responses during the first 20 s immediately after application of TBS, referred to hereafter as short-term potentiation, was significantly decreased; subsequent recordings also displayed a similar decreasing tendency, although these changes did not reach statistical significance (Figures 5A,B).
Unlike the SC-CA1 pathway, the TA-CA1 pathway in the SLM layer was highly resistant to LTP induction, with a single application of HFS failing to produce long-lasting changes ( Figure 5E). However, this single HFS did reveal a significant decrease in early fEPSP responses during the first 60 s poststimulus, a phenomenon known as PTP that involves largely presynaptic changes (Zucker and Regehr, 2002), similar to the suppressed short-term potentiation observed in TBS-LTP in the SC-CA1 pathway (Figures 5E,F). Induction of LTP in the ventral TA-CA1 pathway by applying HFS four times separated by 5-min intervals revealed no differences between genotype (Figures 5G,H), a finding similar to the normal TBS-LTP and HFS-LTP in the SC-CA1 pathway.
In the dorsal CA1 region, neither TBS-LTP nor short-term potentiation immediately after TBS delivery was affected in the SC-CA1 pathway, whereas PTP was suppressed in the TA-CA1 pathway, results partially similar to those obtained in the ventral CA1 region (Figures 5I-L). Lastly, neither long-term depression (LTD) induced by low-frequency stimulation (LFS) nor dihydroxyphenylglycine (DHPG) treatment (for mGluR-LTD) was affected in the SC-CA1 pathway in the ventral CA1 region of Lrrc4c −/− mice (Figures 5M-P).
These results collectively suggest that NGL-1 is important for short-term synaptic plasticity (short-term potentiation and PTP) in both SC-CA1 and TA-CA1 pathways in the Lrrc4c −/− ventral hippocampus, but not for long-term plasticity [LTP (TBS and HFS) or LTD (LFS and mGluR)]. Moreover, given that NGL-1 is enriched in the TA-CA1 pathway in the SLM layer, changes in short-term plasticity in the SC-CA1 pathway in addition to the TA-CA1 pathway in the ventral hippocampus suggest both input-specific and input-nonspecific impairments, although the dorsal hippocampus seems to display an inputspecific impairment in PTP in the TA-CA1 pathway but not short-term plasticity in the SC-CA1 pathway.
Given that short-term synaptic plasticity mainly involves presynaptic changes (Zucker and Regehr, 2002), we measured readily releasable pool estimates and average release probabilities in the ventral CA1, as described previously (Han et al., 2011). We found no changes in either the size of the readily releasable pool or release probabilities for both the Lrrc4c −/− SR and SLM layers (Figures 6A-H). These results suggest that Lrrc4c deletion induces impaired short term plasticity through mechanisms independent of the readily releasable pool and release probability.

Altered Synaptic Protein Localization in SR and SLM Layers of Lrrc4c −/− CA1 Neurons
To examine biochemical changes associated with the decreased PSD density and short-term synaptic plasticity observed in SR and SLM layers of the Lrrc4c −/− hippocampus, we dissected SR-and SLM-enriched lysates from ventral hippocampal CA1 regions and measured the levels of various synaptic proteins by immunoblotting (Figure 7A). These samples were validated using NGL-1 (SLM-enriched), NGL-2 (SR-enriched), GluN2B (SR-enriched; Nicholson et al., 2006), and HCN1 (SLM-enriched; Nolan et al., 2004) as positive controls (see below for details Figures 7B,C,G,N).
The NGL family proteins NGL-1 and NGL-2 showed SLMand SR-specific distribution patterns, respectively, as previously reported , whereas NGL-3 was similarly distributed to both layers (Figures 7B-D), suggesting that NGL-3 may function in both TA-CA1 and SC-CA1 pathways. Intriguingly, NGL-2 was significantly decreased in the SR layer and increased in the SLM layer of Lrrc4c −/− CA1 neurons, suggesting translocation of NGL-2 from the SR layer to the SLM layer in the absence of NGL-1 in the SLM layer ( Figure 7B). Because NGL-2 is known to biochemically associate with N-methyl-D-aspartate receptors (NMDARs; Kim et al., 2006;Um et al., 2018), we also examined the NMDAR subunits, GluN1, GluN2A, and GluN2B. Interestingly, GluN2B levels were significantly decreased in the SR, but not SLM, layer of the Lrrc4c −/− hippocampus, whereas GluN1 or GluN2A levels were not affected (Figures 7E-G).
Collectively, these data indicate that deletion of Lrrc4c, which is enriched in the SLM layer, leads to the translocation of NGL-2 from the SR layer to the SLM layer, as well as a decrease in SR-specific localization of GluN2B in ventral CA1 neurons.

DISCUSSION
In the present study, we explored the impact of Lrrc4c deletion on excitatory synapse development and function in mice. Overall, our results indicate that Lrrc4c deletion leads to moderate changes in excitatory synapse development and function in the hippocampus.
Our EM results indicate that NGL-1 deletion leads to moderate decreases in PSD density in SR and SLM layers of the ventral, but not dorsal, CA1 region of Lrrc4c −/− mice (Figures 2C,D). This result is interesting in that: (1) only the ventral region is affected; and (2) both SR and SLM layers are affected, despite the fact that NGL-1 is ∼4-times more strongly expressed in the SLM layer ( Figure 7B). The ventral-only decrease in PSD density in the Lrrc4c −/− hippocampus will require further investigation, although dorsal and ventral regions of the hippocampus are known to have different properties and serve different brain functions; i.e., the dorsal hippocampus subserves for cognitive functions, while the ventral hippocampus subserves for emotion-related functions such as anxiety and stress (Fanselow and Dong, 2010). However, both dorsal and ventral hippocampus receive presynaptic inputs originating from the EC; more specifically, medial and lateral EC layer III neurons project to the proximal (closer to CA2) and distal (closer to the subiculum) CA1 regions, respectively, in both dorsal and ventral hippocampus (Canto et al., 2008;Heys et al., 2012;Masurkar et al., 2017). Therefore, the ventral-specific decrease in PSD density in the Lrrc4c −/− SLM layer suggests a stronger impact of NGL-1 deletion on ventral TA-CA1 synapses originating from more ventral and medial EC layer III, although functional changes at TA-CA1 synapses were observed in both ventral and dorsal hippocampus in Lrrc4c −/− mice (see below).
The decreased PSD density in the SLM layer induced by the loss of NGL-1 may be attributable to the loss of the trans-synaptic interaction between postsynaptic NGL-1 and presynaptic netrin-G1 in the axons of SLM-projecting EC layer III neurons Nishimura-Akiyoshi et al., 2007;Matsukawa et al., 2014), a neuronal population that differs from dentate gyrus-projecting neurons in the EC layer II (Canto et al., 2008;Heys et al., 2012;Masurkar et al., 2017). The decreased PSD density in the SR layer induced by the loss of SLM-enriched NGL-1 might be attributable to the partial shift of NGL-2 localization from the SR to the SLM layer ( Figure 7C). The NGL-2 protein translocated to the SLM layer might be stabilized through a non-conventional NGL-2-netrin-G1 interaction with a much weaker affinity relative to that for the conventional NGL-1-netrin-G1 interaction (Woo et al., 2009b;Seiradake et al., 2011), enabled by the absence of NGL-1 at SLM synapses. Alternatively, the decrease in SR levels of GluN2B (Figure 7G), known to form a complex with NGL-2 (Kim et al., 2006;Um et al., 2018; but see Zhang et al., 2016), might have contributed to the decreased PSD density in the SR layer. These layerindependent impacts of Lrrc4c deletion on both SR and SLM layers contrast with the input-specific decrease in spine density and excitatory synaptic transmission in the SR layer induced by Lrrc4 (NGL-2) deletion in mice (DeNardo et al., 2012;Um et al., 2018) and suggest the critical roles of SLM synapses for hippocampal functions. Previous studies have shown that direct input from the EC layer III to the CA1 SLM layer is important for many hippocampal functions (Remondes and Schuman, 2002Brun et al., 2008;Suh et al., 2011). Therefore, the SRto-SLM translocation of NGL-2 in Lrrc4c −/− mice may represent an effort by CA1 neurons to mitigate the impacts of Lrrc4c (NGL-1) deletion on the TA-CA1 pathway. Lrrc4c −/− mice show normal levels of spontaneous and basal excitatory synaptic transmission in the ventral hippocampus (Figures 3A,C; 4A,B,E,F). These results contrast with the moderately decreased density of the PSD in this region. One possible explanation for this discrepancy is that the SLM layer is located in the distal (not proximal) segment of CA1 neuronal dendrites, dampening the impact of the reduced density of the PSD on spontaneous synaptic transmission (i.e., mEPSCs) measured in cell bodies. Alternatively, it could be that the moderate reduction in the density of the PSD (∼10%-15%) is not sufficient to manifest as functional changes (i.e., basal transmission). With regards to amplitude, it could be that only synapses unaffected by Lrrc4c deletion were left, thus leaving the average amplitude unchanged. Lastly, there is the possibility of compensatory pre-or postsynaptic changes. Again, the NGL-2 protein translocated from the SR to SLM layer might dampen the functional impairments at TA-CA1 synapses.
Intriguingly, however, short-term synaptic plasticity (shortterm potentiation and PTP) was suppressed in SC-CA1 and TA-CA1 pathways in the ventral Lrrc4c −/− hippocampus, while only the PTP in the TA-CA1 pathway, but not short-term potentiation in the SC-CA1 pathway, was suppressed in the dorsal Lrrc4c −/− hippocampus (Figure 5). These results indicate stronger and input-specific impacts of Lrrc4c deletion in the TA-CA1 pathway relative to the SC-CA1 pathway. Given that TA-CA1 synapses are the place where postsynaptic NGL-1 transsynaptically interacts with presynaptic netrin-G1 Nishimura-Akiyoshi et al., 2007) and that short-term potentiation and PTP are known to involve presynaptic mechanisms (Zucker and Regehr, 2002), the suppressed PTP at Lrrc4c −/− TA-CA1 synapses might involve limited presynaptic netrin-G1 localization at Lrrc4c −/− synapses, as recently reported (Matsukawa et al., 2014). Alternatively, but not mutually exclusively, it may involve limited cis-interaction of presynaptic netrin-G1 with neighboring LAR-family receptor tyrosine phosphatases, an interaction induced by the trans-synaptic binding of NGL-1 to netrin-G1 that promotes presynaptic differentiation (Song et al., 2013). Similarly, the suppressed short-term plasticity at Lrrc4c −/− SC-CA1 synapses in the SR layer may reflect decreased levels of presynaptic netrin-G2 caused by the reduction in postsynaptic NGL-2 levels, which in turn is attributable to the SR-to-SLM shift in NGL-2 protein.
NGL-1 has also been implicated in several neuropsychiatric disorders. A single-nucleotide polymorphism in the LRRC4C gene is associated with the risk of bipolar disorder (Greenwood et al., 2012). In addition, copy number variations in LRRC4C have been identified in individuals with autism spectrum disorders (ASDs) and developmental delays (Maussion et al., 2017). Some of the synaptic phenotypes that are associated with Lrrc4c deletion identified in the present study might underlie these NGL-1-related brain disorders.
In conclusion, our results suggest that Lrrc4c deletion in mice leads to input-independent changes in the development and function at excitatory synapses in the SLM and SR layers of the ventral hippocampus.

DATA AVAILABILITY
This manuscript contains previously unpublished data. The name of the repository and accession number are not available.

ETHICS STATEMENT
Mouse maintenance and procedures were performed in accordance with the Requirements of Animal Research at KAIST, and all procedures were approved by the Committee of Animal Research at KAIST (KA2012-19).