{'fraction_non_alphanumeric': 0.03293536434746809, 'fraction_numerical': 0.029916289282283518, 'mean_word_length': 5.298617113223854, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 4, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 5, 'word_list_counts': {'cursed_substrings.json': 1, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
Genetic Variants in MTHFR Gene Predict ≥ 2 Radiation Pneumonitis in Esophageal Squamous Cell Carcinoma Patients Treated with Thoracic Radiotherapy

Reactive oxygen species (ROS), formed as an indirect production of radiotherapy (RT), could cause DNA damage of normal tissues. Meanwhile, our body possesses the ability to restore the damage by DNA repair pathways. The imbalance between the two systems could finally result in radiation injury. Therefore, in this prospective cohort study, we explored the association of genetic variants in ROS metabolism and DNA repair pathway-related genes with radiation pneumonitis (RP). A total of 265 locally advanced esophageal squamous cell carcinoma (ESCC) patients receiving RT in Chinese Han population were enrolled. Five functional single nucleotide polymorphisms (SNPs) (rs1695 in GSTP1; rs4880 in SOD2; rs3957356 in GSTA1; and rs1801131, rs1801133 in MTHFR) were genotyped using the MassArray system, and rs1801131 was found to be a predictor of ≥ 2 RP. Our results showed that, compared with TT genotype, patients with GG/GT genotypes of rs1801131 had a notably lower risk of developing ≥ 2 RP (HR = 0.339, 95% CI = 0.137–0.839, P = 0.019). Further independent studies are required to confirm this findings.


Introduction
Esophageal carcinoma was diagnosed in nearly 477,900 individuals in China alone in 2015 [1]. Esophageal squamous cell carcinoma (ESCC) represents approximately 95% of all cases of esophageal cancer in the Chinese population. Radiotherapy (RT), alone or in combination with chemotherapy is the mainstay for the management of locally advanced ESCC. Higher doses of RT are closely associated with improved local control; however, radiation pneumonitis (RP) a1111111111 a1111111111 a1111111111 a1111111111 a1111111111 remains a significant barrier to elevated radiation doses and can substantially compromise the quality of life.
Previous studies have confirmed that multiple treatment-related and patient-related factors, such as dosimetric parameters, chemotherapy agents, age, pulmonary function, smoking status, and sex are correlated with RP [2][3][4]. Unfortunately, these factors are insufficient to explain interindividual variability [5]. Therefore, identification and application of new biomarkers, together with traditional dosimetric and clinical determinants of RP, could significantly improve the tailoring of RT treatment [6].
Single nucleotide polymorphisms (SNPs), recognized as biological genetic markers, have been reported to participate in many biological processes. Recent studies have also identified SNPs of candidate genes involved in DNA damage repair, pro-inflammatory responses, and oxidative stress are potential biomarkers for RP [7][8][9].
RT causes cytotoxicity through direct ionization of normal tissues and a combination of free radicals, such as reactive oxygen species (ROS) formed by radiolysis of water [10]. These ROS, reacting with biomacromolecules, can damage DNA, resulting in cell death [11][12][13]. The enzymes that play a key role in ROS metabolism are manganese superoxide dismutase (SOD2) and glutathione S-transferases (GSTs, alpha, pi). The former, enables the dismutation of superoxide radicals to hydrogen peroxide and oxygen [14][15].The latter has the potential to neutralize ROS [16]. Previous study revealed that single nucleotide polymorphisms of genes in ROS metabolism pathway are closely associated with acute skin toxicity for breast cancer patients receiving radiotherapy [10]. So it is highly plausible these genetic variants could also affect radiation lung injury, however, which has not well been explored.
Meanwhile, our body possesses the ability to restore the damage by DNA repair pathways. MTHFR is one of the most significant genes involving in that path. One article reported that single nucleotide polymorphisms in MTHFR gene could exert influence on the incidence of radiation pneumonitis in white lung cancer patients [17]. As we know, genetic variants may have racial differences, it is unknown whether this effect still exist in our Chinese Han population. Thus, it still possesses significance to further validate this finding.
In view of the above mentioned, we therefore depended on the existing literature by screening for an association of functional SNPs in SOD2, GSTP1, GSTA1and MTHFR genes with the risk of RP in a prospective cohort of ESCC patients treated with definitive RT.

Ethics statement
This study was approved by the Institutional Review Board of Shandong Cancer Hospital Affiliated to Shandong University and informed consents were signed before treatment. We complied with HIPAA regulations.

Patient population
For our prospective cohort study, a total of 312 ESCC patients receiving definitive thoracic RT between October 2014 and January 2016 from Shandong Cancer Hospital Affiliated to Shandong University, were initially enrolled. Patients with pathologically diagnosed Ⅱ-Ⅳ (American Joint Committee On Cancer, 7th edition) ESCC, a Karnofsky performance status (KPS) of >60, and a life expectancy of at least 6 months were included. After we excluded those who had previously undergone thoracic radiation or esophagectomy, and those who were lost to follow up, the remaining 265 patients formed the final study cohort. Detailed clinical information and dosimetry parameters were also collected.

Follow-up and evaluation of RP
All patients enrolled in this study were examined during RT and at 1 month after completing RT. Patients were then followed up every 3 months. Radiographic examination by chest X-ray or computerized tomography was performed at each follow-up visit after completion of treatment. RP was independently graded by three radiation oncologists according to Common Terminology Criteria for Adverse Events 4.0, (CTCAE 4.0) as follows: Grade 0, no change; Grade 1, asymptomatic and diagnosed by radiographic findings only; Grade 2, symptomatic, not interfering with daily activities; Grade 3, symptomatic, interfering with daily activities or oxygen required; Grade 4, assisted ventilation required; Grade 5, fatal.

SNP selection and genotyping
A 5ml whole-blood sample was obtained from each patients before RT, and genomic DNA was isolated from the whole-blood samples using AxyPrep Blood Genomic DNA Miniprep Kit (Axygen, USA). Genotyping was performed by Sequenom MassArray System (San Diego, USA) on known functional SNPs for candidate genes in ROS metabolism and DNA repair pathways including: 1) glutathione S-transferases pi 1 (GSTP1; rs1695); 2) superoxide dismutase 2 (SOD2; rs4880); 3) glutathione S-transferases alpha 1(GSTA1; rs3957356); 4) methylenetetrahydrofolate reductase (MTHFR; rs1801131 and rs1801133). All of the SNPs were selected according to the following criteria: (1) the minor allele frequency was >5% in the Chinese population based on the HapMap HCB data; (2) the variant was located in the functional regions of the gene; (3) previously common, well studied variants. All researchers responsible for genotyping were blind to the clinical outcome. Detailed information of the five SNPs was shown in Table 1.

Statistical analysis
The development of ! 2 RP was defined as the end point in this study. The time to the end point was calculated from the start of RT. All analyses were performed with SPSS 17.0 (SPSS Inc., Chicago, IL). Hazard ratios (HRs) and 95% confidence intervals (CIs) were calculated by the Cox proportional hazards model. In addition, a multivariate Cox regression analysis was performed to adjust for other covariates. Kaplan-Meier analysis was used to evaluate the cumulative RP probability. All statistical tests were carried out with a two-sided P<0.05 level.

Genetic variants and RP
In addition, cumulative RP probability for ! 2 RP of rs1801131 was calculated by Kaplan-Meier analysis. Generally, RP developed more often in patients exhibiting TT genotypes, with ! 2 RP rates of 19.7%, compared to those possessing GG+GT genotypes, for which the RP incidence was 6.7% (P = 0.002, Fig 1).

MTHFR: rs1801131 and dosimetric parameters
Since dosimetric parameters were also risk factors for RP, we further performed subgroup analysis to determine whether the rs1801131genotype is independent from dosimetric factors. Patients were divided into four groups according to genotype in rs1801131 and MLD or V20. Patients with TT genotypes in rs1801131 and MLD>11.6 Gy or V20>17.1% had the highest RP risk compared with other groups (P<0.001; P<0.001,respectively, Fig 2). However, this difference was not significant in patients who received MLD 11.6 Gy or V20 17.1%, suggesting that the effect of genetic variants on the risk of ! 2 RP were independent from dosimetric parameters.

Discussion
In our prospective study, we examined the association between genetic variants in SOD2, GSTP1, GSTA1 and MTHFR genes and the RP risk in ESCC patients. We found that rs1801131 of MTHFR gene in the DNA repair pathway maybe a reliable and independent predictor for ! 2 RP. The study indicated that patients with GG/GT genotypes had a decreased risk of ! 2 RP compared with other genotype. The effect of this genotype on the risk of RP was independent from dosimetric factors. However, genetic variants in ROS metabolism-related genes were not found to be significantly associated with RP risk. MTHFR is an important enzyme, that catalyze the irreversible conversion of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate. The latter is the main form of circulatory folate, which converts methionine to S-adenosylmethionine, and S-adenosylmethionine is the universal methyl donor for various intracellular methylation reactions, particularly DNA methylation [18][19][20][21]. The former 5,10 methylenetetrahydrofolate, participating in the synthesis of thymidine, is believed to be critical in the repair of DNA [14]. Detailed information was shown in Fig 3. The MTHFR enzyme is encoded by the MTHFR gene, which is localized to chromosome 1p36.3 spanning over 20 kb and contains a noncoding exon (exon 1) and 11 coding exons [22]. The rs1801131 of MTHFR results in a glutamate to alanine substitution at codon 439 in exon 7, which is located in the COOH-terminal regulatory domain of the gene, and results in a 30-40% reduction of enzymatic function in the homozygous variant genotype [22]. What's more, other research demonstrated that after total body irradiation in mice, MTHFR activity levels decreased while thymidylate synthase activity increased suggesting that the regulation of these enzymes in diverting folate metabolism toward thymidine base synthesis may play an important role in the cellular response to ionizing radiation [23].In addition, recent investigations have found that genetic variants of MTHFR were related to many diseases [24][25][26][27][28][29]. A further study conducted by Harvard School of Public Health found that genetic variants in MTHFR gene associated significantly with RP risk for lung cancer patients receiving radiotherapy in white population [17]. Although well designed, this research still has several shortcomings, which deserves more heed. Firstly, the lung caner patients in this article were retrospectively collected from 2001 to 2009. It is notoriously difficult to accurately identify and grade radiation pneumonitis just based on medical records. Then, the whole population of the research was relatively inhomogeneous for including both small cell and non-small cell lung cancer patients. Furthermore, the sample set was relatively small, which only constituted by 136 patients. In addition, it is well known that frequencies of SNPs vary significantly between different ancestries, which further influence disease susceptibility. It is also unclear whether this positive finding still showns influence in other groups. Taken all issues above into consideration, we performed this prospective study in a relatively large Chinese Han ESCC population.
Dynamic interactions involving radiation-induced death of target cells, and generation of ROS are believed to contribute to radiation tissue injury [30]. Indirect damage caused by ROS commonly plays a bigger role in the process of RP. Recent studies also illustrated genetic variants involved in ROS metabolism pathway-related genes could predict radiation-induced skin toxicity for breast cancer patients receiving RT [31]. However, in our analysis, while CC genotype of rs3957356 in GSTA1 gene shows a relative high risk of RP, the results was still not statistically significant, which further studies are deserved to confirm the results.
Our study has several advantages. Firstly, as is well established, RP is somewhat a diagnosis of exclusion, it is very difficult to accurately assess and grade radiation toxicity based on medical records in retrospective studies [8]. Thus, our prospective study has the advantage of objective and accurate diagnosis of RP. Another strength of our study is relative uniform population, which is achieved by including only Chinese Han patients with locally advanced ESCC to eliminate the influence of confounding variables.
However, our study is also limited by some shortcomings. Firstly, we have a relative small sample size, thus our findings should be validated in a larger and multicenter population. Secondly, the genetic variants included in this study were candidate SNPs based on known or predicted effects on gene function. A candidate-gene approach has the advantage of being anchored by known biological plausibility, but there is a possibility that this study has missed additional risk alleles or detected a variant in linkage disequilibrium with the true causative SNPs [32]. Thirdly, as some genetic markers are ethnic specific, our results also should be validated among different ethnic populations in the future. In addition, the functional SNPs in the MTHFR gene are significantly associated with RP, but the exact mechanism by which this genetic variant alters the risk of RP, is still unknown, and therefore warrants further study.
In conclusion, our study explored the association between genetic variants in candidate genes involved in ROS metabolism, DNA repair pathways and the risk of RP. We identified that rs1801131 of MTHFR gene in DNA repair pathway was statistically associated with ! 2 RP. However, our conclusion should be interpreted with caution in clinical practice because of several problems encountered in this field [33][34][35]. Further validation studies and investigations into the underlying mechanisms involving the genetic variants are required.