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In Vitro Anticancer Activity and Structural Characterization of Ubiquinones from Antrodia cinnamomea Mycelium

Two new ubiquinones, named antrocinnamone and 4-acetylantrocamol LT3, were isolated along with six known ubiquinones from Antrodia cinnamomea (Polyporaceae) mycelium. The developed HPLC analysis methods successfully identified eight different ubiquinones, two benzenoids, and one maleic acid derivative from A. cinnamomea. The ubiquinones 1–8 exhibited potential and selective cytotoxic activity against three human cancer cell lines, with IC50 values ranging from 0.001 to 35.883 μM. We suggest that the different cytotoxicity levels were related to their chemical structures, especially the 4-hydroxycyclohex-2-enone ring and the presence of a free hydroxyl group in the side chain. The suppression by 4-acetylantrocamol LT3 stopped the cell cycle at the beginning of the G2-M phase thus making the cell cycle arrest at the sub-G1 phase as compared with control cells.


Introduction
Cancer is a significant cause of death worldwide, accounting for some 8.8 million deaths in 2015 [1]. Today numerous new cytotoxic agents are being used as anti-cancer agents, but only small improvements in the survival rate of advanced or metastatic cancer have been observed and new chemotherapeutic drugs are urgently needed. Studies on natural products are one approach for the discovery of new cancer drugs. Only a few ubiquinones with cyclohex-2-enone fragments have been isolated from natural products and the relationships between their cytotoxicity and structures are not clear. These results prompted us to explore further analogs of ubiquinone and compare the effect of different substituents on the cytotoxic activity against some human cancer cell lines.
Antrodia cinnamomea, belonging to the Polyporaceae family, is a medicinal fungus found in Taiwan. It exhibits anti-cancer, hepatoprotective and immunomodulatory activities [2,3]. Antroquinonol (5) is a ubiquinone derivative found in fermented A. cinnamomea mycelium. Recent studies have showed its potent activity against cancer, periodontal diseases, cardiovascular diseases, male infertility, and Parkinsonism [4][5][6][7][8][9]. Antroquinonol showed cytotoxic activity against human breast carcinoma and human liver carcinoma cell lines, as well as against human prostate carcinoma cell lines [10]. In some studies on Chinese herbs introduced in cancer treatment, the crude alcohol extract from A. cinnamomea mycelium was found to exhibit major cytotoxic activity on human cancer cell lines [2]. The alcohol extract of this fungi was re-investigated, leading to the characterization and separation of two new ubiquinone derivatives, antrocinnamone (1) and 4-acetylantrocamol LT3 (2), six known ubiquinone derivatives, two benzenoid derivatives, and one maleic acid derivative. In this study, we report the separation of new ubiquinones from A. cinnamomea, the HPLC fingerprint of the alcohol extract of A. cinnamomea, and the correlation between respective chemical structure and cytotoxicity of the ubiquinones 1-8 on three human cancer cell lines, namely A549, HepG2, and PC3.

Isolation and Identification
The dried A. cinnamomea mycelium was extracted with 95% alcohol, and the extract was successively partitioned with dichloromethane and water. The dichloromethane-soluble fraction (60 g, dried, from 1305.3 g of mycelium) was subjected to column chromatography and HPLC separation.
Compound 2 was also obtained as a yellow oil with the molecular formula C26H40O6 from HRESIMS (Supplementary materials) combined with 1 H-and 13 C-NMR spectroscopic data (CDCl3 ,  Tables 1 and 2). The UV spectrum of 2, which displayed absorption maximum at 264.4 nm, and its IR spectrum (3448, 2974, 1744, 1632, 1454, 1364, 1236, 1142, 1012, 944, 596 cm −1 ) were similar to those of antrocamol LT3 (4) [12], indicating the presence of a ubiquinone fragment. The 1 H-NMR spectrum of 2 (Table 1) showed five primary methyl groups, four methylene groups, two methine protons, two methoxyl groups, one oxygenated methine proton, four olefinic protons, and one acetyl group, which was very similar to 2 except for the presence of an H-4 (δ 5.74, d, 1H) signal further downfield in 4 and an additional acetyl group (δ 2.08, s, 3H) suggesting an additional acetyl group link to C-4 of antrocamol LT3 (4) [12].     This was partially established by a COSY-45 spectrum, which indicated the coupling pattern of the oxygenated methine proton (δ 5.74, d, J = 3.2 Hz, H-4) and a methine proton at δ 1.88 (1H, m, H-5). The above data suggested 2 to be 4-acetylantrocamol LT3. The configuration of both C-8 and C-12 was the E form, as suggested by the δ C of C-20 and C-21 at δ C 16.02 and 16.08, respectively, and in contrast to those of the Z configuration at approximately δ C = 25.0 [16]. The relative configuration of the ring in 2 was consistent with that of antroquinonol and was corroborated by a NOESY spectrum [10,12].

HPLC Analysis and Fingerprint of Compounds
The calibration curve of antrocinnamone was linear within a range of 0.125-2.0 mg/mL (R 2 = 0.9962) and the calibration curve of 4-acetylantrocamol LT3 was linear within a range of 0.125-2.0 mg/mL (R 2 = 0.9999).

Cytotoxic Activity of Compounds 1-8
The cytotoxicity evaluation of ubiquinone derivative compounds 1-8 against three human cancer cell lines (A549, HepG2, and PC3) showed that the IC50 values for these compounds ranged from 0.001 to 100 M, whereas those against MDCK (a non-malignant cell line) were > 100 M for most of the compounds (Table 3). Vepesid and taxol were used as positive controls.

Cytotoxic Activity of Compounds 1-8
The cytotoxicity evaluation of ubiquinone derivative compounds 1-8 against three human cancer cell lines (A549, HepG2, and PC3) showed that the IC 50 values for these compounds ranged from 0.001 to 100 µM, whereas those against MDCK (a non-malignant cell line) were > 100 µM for most of the compounds (Table 3). Vepesid and taxol were used as positive controls. In particular antrocamol LT3 (4) was the most powerful compound against these three cancer cell lines, with IC 50 values of 0.080, 0.1060, and 0.0010 µM for the A549, HepG2, and PC3 cell lines, respectively. Ubiquinones possessing a 4-hydroxy-2,3-dimethoxy-6-methylcyclohex-2-enone ring seemed to exhibit selective and powerful cytotoxic activity against the cancer cells, but the acetylation at C-4, e.g., 4-acetylantrocamol LT3 (2), reduced the cytotoxicity of ubiquinones. All compounds showed relatively lower toxicity against the non-malignant cell line (MDCK) than the cancer cell lines. Compounds 9-11 exhibited no cytotoxicity against normal and cancer cells.
Comparing the ubiquinone derivatives 1-8, we found that different cytotoxicity levels were related to their chemical structure. First, a 4-hydroxycyclohex-2-enone ring may be an essential fragment for the anticancer activity of these ubiquinones. Second, ubiquinones possessing a 4-hydroxycyclohex-2-enone ring and a 4-acetate fragment were much less active relative to the corresponding parent compounds, such as 2, 6, and 8. Third, ubiquinones possessing a 4-hydroxy-cyclohex-2-enone ring with a free hydroxyl group in the side chain have enhanced anticancer activity, such as compound 3 with a 17-hydroxyl group and antrocamol LT1 with an 15-hydroxyl group [2]. Fourth, ubiquinones with a paraquinone may be more selective against PC3 and A549 cells, but not against the HepG2 cell line. Concurrently, compound 3 also has lower toxicity against the normal cell line (MDCK cell line) compared to compound 5. Compound 7 with a 3-methylfuran-2-one moiety exhibited poorer activity against cancer cell lines than compound 3. However, compound 7 was less toxic to the normal cell line (MDCK cell line) than compound 5.
According to the above results, a 4-hydroxycyclohex-2-enone ring contributes to the anticancer activity of these ubiquinone derivatives. Interestingly, the presence of a free hydroxyl group in the side chain significantly increased the anticancer activity compared to antroquinonol and a 4-acetate. Compounds 1-8 seemed to exhibit selective cytotoxic activity against the cancer cells. The two benzenoid derivatives 9 and 10, and the maleic acid 11, exhibited poor activity against the cancer cell lines, with only compound 9 exhibiting some activity against the PC3 cell line with an IC 50 value of 13.2590 µM (Table 3). Compounds 1-4 and 7-11 also showed relatively low cytotoxicity levels against the non-malignant cell line (MDCK) with an IC 50 > 100 m.

Effect of 4-Acetylantrocamol LT3 on the Cell Cycle Distribution
We initially performed a flow cytometric analysis to confirm whether 4-acetylantrocamol LT3-induced apoptosis was related to arrest the cell cycle progression by quantitating the induction of apoptosis % (sub-G1 phase) and cell cycle distribution. As shown in Table 4 and Figure 4, 4-acetylantrocamol LT3 treatment in HepG2 cells for 24 h induced sub-G1 phase accumulation in a dose dependent manner as compared with control cells. This evidence seems to indicate that 4-acetylantrocamol LT3 could induce HepG2 cell apoptosis.

General Methods
Optical rotations were measured on a P-1020 digital polarimeter (JASCO, Tokyo, Japan). UV spectra were recorded on a Multiskan GO spectrophotometer (Thermo Scientific, Vantaa, Finland). IR spectra were obtained using a Nicolet iS5 spectrophotometer (Thermo Scientific, Madison, WI, USA). The 1D and 2D NMR spectra were run on an Agilent spectrometer (400 MHz for 1 H and 100 MHz for 13 C) (Agilent Technologies, Santa Clara, CA, USA). Proton and carbon chemical shift values relative to the solvent peak (CDCl 3 , δ H 7.24, δ C 77.0) were used as internal standards. HRESIMS spectra were measured using a Q-TOF AccuTOF GCX GC mass spectrometer (JEOL, Tokyo, Japan). HPLC was performed on a Hitachi instrument equipped with an L-7100 series quaternary gradient pump (Hitachi, Tokyo, Japan), and a diode array detector (L-7455) linked to a Hitachi lachrom software data handling system (D-7000 Multi-HSM-Manager). The system was fitted with a Cosmosil 5C18-MS-II packed HPLC column (A) (250 mm × 4.6 mm I.D. with 5 µm particles) and column (B) 250 mm × 20 mm I.D. with 5 µm particles. The column temperature was maintained at 25 • C and the injection volume was 10 µL. Analytical HPLC was performed using the (A) column under gradient conditions with a mobile phase consisting of a linear gradient from water-methanol (40:60) to water-methanol (20:80) over 15 min, a 15-20 min gradient from water-methanol (20:80) to 100% methanol, and 100% methanol for 10 min at the flow rate of 1.0 mL/min with UV wavelength 254 nm. Preparative HPLC was performed using the (B) column and preparative HPLC conditions were the same as those of analytical HPLC, except that the flow rate was changed from 1 mL/min into 10 mL/min.

Material
Dried mycelium from A. cinnamomea fungus was provided by Lan-Tyng Co. (Taipei, Taiwan), in December 2015. The fungi were identified by Prof. H.C. Lin, National Defense Medical Center, Taipei, Taiwan, where a voucher specimen (NDMCP No. 1011201) has been deposited.

Preparation of Crude Fungus Extracts
The dried mycelium of A. cinnamomea fungus (6.0 kg) was extracted with 95% ethanol (60 L × 2) at room temperature. The combined extract was concentrated under reduced pressure to yield a brown syrupy mass (AC-E; 1305.3 g). This crude extract was dissolved in water and then partitioned (1:1) with dichloromethane to obtain a dichloromethane-soluble fraction (AC-E-D; 553.3 g) and a water-soluble fraction (AC-E-W; 773.6 g). The dried extracts were stored at 4 • C in the dark until further purification.

Preparation of Standard and Sample Solutions for HPLC Analysis
Standard stock solutions were prepared by dissolving ethanolic extract and compounds 1-11 in methanol and storing them at 4 °C in a refrigerator. The reference standards were prepared by serial dilutions prior to use. Finally, the A. cinnamomea ethanolic extract dissolved in methanol (10 mg/mL) and compounds 1-11 dissolved in methanol (a range of 0.125-2.0 mg/mL) were prepared for HPLC analysis. These solutions was filtered through a disposable syringe filter (0.50 mm, Dismic-25JP Advantec, Yamanashi, Japan) before injection into an HPLC system.

HPLC Analysis Method
Constituents of A. cinnamomea ethanolic extract were analysed by HPLC. The eluted components were identified based on the retention time in comparison with the used reference standards. The identification of constituents was also confirmed with a photodiode array detector by comparison with UV spectra of standards over the wavelength range 254 nm.

Preparation of Standard and Sample Solutions for HPLC Analysis
Standard stock solutions were prepared by dissolving ethanolic extract and compounds 1-11 in methanol and storing them at 4 • C in a refrigerator. The reference standards were prepared by serial dilutions prior to use. Finally, the A. cinnamomea ethanolic extract dissolved in methanol (10 mg/mL) and compounds 1-11 dissolved in methanol (a range of 0.125-2.0 mg/mL) were prepared for HPLC analysis. These solutions was filtered through a disposable syringe filter (0.50 mm, Dismic-25JP Advantec, Yamanashi, Japan) before injection into an HPLC system.

HPLC Analysis Method
Constituents of A. cinnamomea ethanolic extract were analysed by HPLC. The eluted components were identified based on the retention time in comparison with the used reference standards. The identification of constituents was also confirmed with a photodiode array detector by comparison with UV spectra of standards over the wavelength range 254 nm.

Cytotoxicity Analysis Method
Viability of the human cancer cell lines and normal cell line treated with different concentrations of A. cinnamomea extracts, subfractions, and isolates was evaluated using the cell counting kit-8 assay. Briefly, a total of 5 × 10 3 cells/well (A549, HepG2, PC3, or MDCK cells) were seeded into 96-well plates for 12 h, and the cells were treated with various concentrations of the isolated compounds (0.01-100 µM, double dilution method) for 24 h. The original medium was removed, 10% of the cell counting kit-8 in PBS was added to each well, and the plates were incubated for 2 h. The absorbance was measured at 540 nm using an enzyme-linked immunosorbent assay (ELISA) plate reader [18].

Cell Cycle Analysis
Stock solutions of 4-acetylantrocamol LT3 (20 mM) were prepared by dissolving them in DMSO, and appropriate working dilutions were prepared with the cell culture medium prior to the experiments. For cell cycle distribution analysis, HepG2 cells were treated with DMSO (control) and 4-acetylantrocamol LT3 for 24 h. The cells were then fixed in ice-cold 70% methanol for overnight. After an additional wash with PBS, the cell pellets were stained with 1 mL of propidium iodide (PI) staining solution containing 200 µg of PI in 1 mL of PBS containing 2 mg of DNase free RNase for 30 min. Acquisition and analysis were performed by flow cytometry (FACSCalibur flow cytometer, Becton, Dickinson and Co., Franklin Lakes, NJ, USA) with excitation at 488 nm. Data on each sample represent the percentage of cells in the sub-G1, G1, S, G2/M phases of the cell cycle, respectively.

Statistical Analysis
All experiments were carried out in triplicate, and each experiment was repeated three times. Data analysis was carried out using SPSS statistical package version 18.0 (SPSS, Inc., Armonk, NY, USA). The IC 50 values (the concentration of drug necessary to induce 50% inhibition) were measured for all of the tested drugs using the Probit test in the SPSS software. The cell cycle distribution values of mean and standard deviation (mean ± SD) and 95% confidence intervals (CI) of means to verify the statistical significance of all parameters were calculated. The p-values of < 0.05 were adopted as statistically significant. All data are presented in this report as means ± SD of three replicates from three separate experiments.

Conclusions
In conclusion, the present study reports the identification of two new ubiquinones, antrocinnamone (1) and 4-acetylantrocamol LT3 (2) isolated from Antrodia cinnamomea (Polyporaceae) mycelium. In addition, we developed an HPLC analysis method to separate eight different ubiquinones from A. cinnamomea and compared their cytotoxic activity against human cancer cell lines. We found that the different cytotoxicity levels were related to their chemical structures, where especially a 4-hydroxycyclohex-2-enone ring and the presence of a free hydroxyl group in the side chain, could potentiate the anticancer activity on three human cancer cell lines, A549, HepG2, and PC3. 4-Acetylantrocamol LT3 treatment in HepG2 cells for 24 h induced about 4-7-fold sub-G1 phase accumulation in a dose dependent manner as compared with control cells. We suggest that suppression by 4-acetylantrocamol LT3 blocked the entry of the cell cycle at the G2-M phase and thus caused cell cycle arrest at the sub-G1 phase as compared with control cells.