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Cytotoxicity and antibacterial activities of crude extract of Streptomyces sp. W08, an endophyte of Amomum

Strain W08 was isolated from the pseudostem tissue of Amomum krervanh Pierre (Zingiberaceae) and identified as Streptomyces sp. by analyzing its morphology, chemotaxonomy, and 16SrDNA sequence. It was shown to exert bactericidal effects against Bacillus cereus, Bacillus subtilis, Staphylococcus aureus, and methicillin-resistant S. aureus. Crude extract of its culture inhibited the tested bacteria, with minimum inhibitory concentrations of 32–128 μg/ml. The cytotoxicity of the crude extract was also assessed against cell lines using [3-(4,5-Dimethylthiazol-2-yl)2,5-Diphenyltetrazolium Bromide] colorimetric assay. The crude extract showed weak cytotoxic activity on L929 and Vero cells with IC50 values of 453.22 and >512.00 μg/ml, respectively. The most powerful cytotoxicity of the crude extract was observed in human cervical carcinoma cells and human breast carcinoma cells with IC50 values of 78.45 and 106.50 μg/ml, respectively, while the IC50 value of human hepatocellular carcinoma cells was 425.86 μg/ml. The bioactive compounds in the extract were isolated by column chromatography and thin-layer chromatography, which were revealed by IR and NMR analyses to be 1-hydroxy-2-methyl-6-methoxyanthraquinone (1) and 6-methoxy-2methylquinizarin (2). The findings showed that the crude extract of Streptomyces sp. W08 containing the bioactive compounds exhibited antibacterial activity and selective cytotoxicity toward some cancer cells. The studies on these compounds could thus lead to useful approaches for managing some bacterial infections and cancers in the future.

Recently, in studies on the endophytic actinomycetes, we isolated strain W08 from the pseudostem tissue of Amomum krervanh Pierre. It has antibacterial activity against mostly Gram-positive bacteria. Herein, we report the cytotoxicity of its crude extract against two normal cell lines [murine epithelial cells (L929) and African green monkey kidney cells (Vero)] and three cancer cell lines [human breast carcinoma cells (MCF-7), human cervical carcinoma cells (HeLa), and human hepatocellular carcinoma cells (HepG2)] using a (3-(4,5-Dimethylthiazol-2-yl)-2,5-Diphenyltetrazolium Bromide) (MTT) colorimetric assay. We also identified this strain, purified the major compounds, and also elucidated their structures.

Isolation, cultivation, and antibacterial screening of endophytic actinomycetes
Various tissues of Amomum krervanh Pierre were used to isolate the endophytic actinomycetes as described in a previous study (Taechowisan et al., 2017). Ten actinomycete isolates were obtained and tested for their ability to produce antibacterial substances against Bacillus cereus ATCC 7064, Bacillus subtilis ATCC 6633, Escherichia coli ATCC 25922, methicillin-resistant Staphylococcus aureus Sp6, Pseudomonas aeruginosa ATCC 28753, and S. aureus ATCC 25923 using an overlay assay on ISP-2 agar plates, as previously described (Wu et al., 2015) with some modifications. Antibacterial screening of actinomycetes was carried out as described in a previous study (Taechowisan et al., 2017). Among the 10 isolates of actinomycetes, the results showed that the best production of antibacterial substances was achieved by isolate W08. This isolate was identified according to the methods of Taechowisan et al. (2003) and Taechowisan et al. (2017). The isolate W08 was grown on ISP-2 agar at 30°C for 14 days, and the culture was extracted with ethyl acetate as described in a previous study (Taechowisan et al., 2017).

Minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC)
The MICs of the crude extract were carried out by the National Committee for Clinical Laboratory Standards microbroth dilution methods (National Committee for Clinical Laboratory Standards, 2000). The crude extract was initially dissolved in dimethyl sulfoxide (DMSO). The MIC and MBC were carried out as described in a previous study (Taechowisan et al., 2017).

MTT assay for cytotoxicity activity (IC 50 )
The normal cell lines [murine epithelial cells (L929) and African green monkey kidney cells (Vero)] and three cancer cell lines [HeLa, human hepatocellular carcinoma cells (HepG2), and MCF-7] were used to assess the IC 50 of the crude extract using MTT assay as described in a previous study (Taechowisan et al., 2017).

Purification and structural elucidation of major components
Ethyl acetate extract (10.75 g) was fractionated by silica gel 60 column chromatography and eluted with a mixture of petroleum ether-ethyl acetate with increasing polarity. Fractions eluted with 3.5% and then 8% ethyl acetate in petroleum ether were purified by thin-layer chromatography (TLC) (solvent: petroleum ether-ethyl acetate, 8.5:1.5 and 4:1) to give compounds 1 and 2, respectively. The purified compounds were then subjected to NMR spectroscopy.

RESULTS AND DISCUSSION
A total of 100 samples each of leaf, pseudostem, rhizome, and root tissues of Amomum krervanh Pierre were examined. The root tissue was the site where actinomycetes were most commonly isolated, where a total of 20% of actinomycetes were found (Table 1), which matches our previous report (Taechowisan et al., 2003). The roots thus present a good habitat for these endophytic actinomycetes. This may be related to the abundance of actinomycetes within the rhizosphere microbial flora (Sardi et al., 1992), enabling easier infection of host plants.
The results showed that, against the tested microorganisms, isolate W08 showed promising activities (Table 2). A large number of endophytic actinomycete isolates have no potential antibacterial   activity against the tested bacteria. As stated in several reports, endophytic actinomycete activity influences the metabolic products of actinomycetes acting on plant growth and physiology Igarashi et al., 2002;Manulis et al., 1994;Meguro et al., 2006;Mishra et al., 1987). Thus, most of them did not produce antimicrobial metabolic products. Based on the results of morphological observation, isolate W08 formed extensive substrate mycelia and abundant aerial mycelia on agar medium. It produced aerial mycelia that differentiated into long spore chains. These spore chains were straight to flexuous (rectiflexibiles) with oval and smooth surface spores ( Figure. 1). Its substrate mycelia were grayish-green to dark olive-brown and the aerial mycelia were greenish-white to light greenish-grey. Owing to features including the presence of LL-type diaminopimelic acid in the whole-cell extracts, isolate W08 was identified as Streptomyces. The 16S rDNA sequence was determined for isolate W08 (1,473 bp). The BLAST search results and the phylogenetic tree are presented in Table 3 and Figure 2, respectively. These results showed that isolate W08 has high levels of sequence similarity to Streptomyces coelicolor NBRC 12854 (accession number: AB184196) and Streptomyces felleus NBRC 12766 (accession number: AB184129). The 16S rDNA analysis showed that isolate W08 is phylogenetically also closely related to these strains. The 16S rDNA sequence data reported in this paper are available in GenBank under accession number AB845558.
The antibacterial activity of the crude extract from Streptomyces sp. W08 culture is shown in Table 4. The crude extract inhibited the tested bacteria, with MICs and MBCs of 32-128 µg/ml and 256 to >512 µg/ml, respectively. However, no activity against Gram-negative bacteria was exhibited by this extract, which was due to the different composition of bacterial cell walls. The mechanisms of action of the crude extract may involve antimicrobial effects, having different activity against Gram-negative and Gram-positive bacteria.
The crude extract showed weak cytotoxic activity against L929 and Vero cells, with IC50 values of 453.22 and >512.00 µg/ ml, respectively (Table 5). The most powerful cytotoxicity of the crude extract was observed in HeLa and MCF-7 cells, with IC50 values of 78.45 and 106.50 µg/ml, respectively, while the IC50 value against HepG2 cells was 425.86 µg/ml. These data are interesting as they suggest that this crude extract is more toxic to some cancer cells than to normal cells, implying its potential as an anticancer agent. Although this preliminary anticancer study demonstrated that the crude extract exhibited an anticancer effect, more detailed investigation is required to isolate the bioactive compounds from the crude extract.
Among our observations of the cytotoxicity toward cancer cells, it was particularly interesting that the crude extract exhibited greater toxicity against HeLa and MCF-7 cells than against L929 and Vero cells. In this context, the therapeutic index (TI) is an important parameter to select samples for developing drugs. This value is the ratio of the concentration of the crude extract at which 50% of the normal cell death to that of the crude extract at which 50% cancer cell death occurred. Further investigation is considered to be warranted if a TI value of ≥4 is identified. The present study found TI values for this crude extract of ≥4 for HeLa and MCF-7 cells. This extract is thus promising for further investigation as an anticancer agent.

CONCLUSION
In summary, crude extract from the culture of Streptomyces sp. W08 showed antibacterial activity against Grampositive bacteria. It also exhibited potent cytotoxic effects on HeLa and MCF-7 cells, while exhibiting low cytotoxicity against normal cells (L929 and Vero cells). These results indicate that this    crude extract may be a potential therapeutic candidate for treating some bacterial infections and cancers.