{'fraction_non_alphanumeric': 0.038202247191011236, 'fraction_numerical': 0.007865168539325843, 'mean_word_length': 5.456521739130435, 'pattern_counts': {'":': 0, '<': 0, '<?xml version=': 0, '>': 1, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
Association analysis between Intragenomic Gene Conversions and pathogenicity in genomes of Escherichia coli and Shigella spp.: a scientific workflow approach

The RECOMBFLOW scientific workflow system was used to test a previously suggested hypothesis that pathogenic Escherichia coli have more Intragenomic Gene Conversions (IGC) than non-pathogenic strains. Although some pathogens (O157:H7 and some Urinary Tract Infection (UTI) strains) had high IGC, two UTI strains and six Shigella (pathogens in the E. coli clade) were near non-pathogenic E. coli levels. Functional bacterial gene families with IGC in >4 genomes included efflux pumps, L-serine deaminases, FeS binding subunits of oxidoreductases and glutamate synthase, porins and related membrane proteins, Rhs elements, and L-ribulose-5-phosphate-4-epimerase. Shigella had lower IGCs in these families than non-pathogenic E. coli.