{'fraction_non_alphanumeric': 0.031807693431083334, 'fraction_numerical': 0.019978385956713498, 'mean_word_length': 4.9513297410046935, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 4, 'https://': 1, 'lorem ipsum': 0, 'www.': 7, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
Development of the FAST-DOSE assay system for high-throughput biodosimetry and radiation triage

Following a large-scale radiological incident, there is a need for FDA-approved biodosimetry devices and biomarkers with the ability to rapidly determine past radiation exposure with sufficient accuracy for early population triage and medical management. Towards this goal, we have developed FAST-DOSE (Fluorescent Automated Screening Tool for Dosimetry), an immunofluorescent, biomarker-based system designed to reconstruct absorbed radiation dose in peripheral blood samples collected from potentially exposed individuals. The objective of this study was to examine the performance of the FAST-DOSE assay system to quantify intracellular protein changes in blood leukocytes for early biodosimetry triage from humanized NOD-scid-gamma (Hu-NSG) mice and non-human primates (NHPs) exposed to ionizing radiation up to 8 days after radiation exposure. In the Hu-NSG mice studies, the FAST-DOSE biomarker panel was able to generate delivered dose estimates at days 1, 2 and 3 post exposure, whereas in the NHP studies, the biomarker panel was able to successfully classify samples by dose categories below or above 2 Gy up to 8 days after total body exposure. These results suggest that the FAST-DOSE bioassay has large potential as a useful diagnostic tool for rapid and reliable screening of potentially exposed individuals to aid early triage decisions within the first week post-exposure.

In the event of a large-scale radiological incident or accident, hundreds of thousands of people may be exposed to ionizing radiation. There is an important need for the development of FDA-approved point-of-care radiation biodosimeters and in vitro diagnostic devices (IVDs) with the ability to rapidly determine past radiation exposure with sufficient accuracy for early population triage and medical management. Biodosimetry technologies may be designed for early in-the-field triage (usually qualitative) or for more clinical evaluation and medical management that includes dose level confirmation (usually quantitative or semi-quantitative) 1 . We have recently developed a new high-throughput biodosimetry assay system called FAST-DOSE (Fluorescent Automated Screening Tool for Dosimetry) which is designed for rapid immune-detection and quantitation of radiation responsive protein biomarkers and reconstruction of dose in human peripheral blood leukocytes. This biomarker-based triage assay has large potential as a useful diagnostic tool for the mass-screening of potentially exposed individuals and offers a short "time-to-result" since cell culture is not required compared with the gold standard micronucleus and dicentric biodosimetry assays [2][3][4] .
The FAST-DOSE assay device is based on imaging flow cytometry (IFC) [5][6][7] and a panel of intracellular biomarkers identified by earlier proteomic study 8 to rapidly quantify the upregulation of biomarker expression in blood leukocytes using fluorescent imagery and algorithms for the estimation of absorbed dose. The advantage of IFC (ImageStream, Luminex, Austin, TX) technology is that it combines the speed and quantification power of flow cytometry with the imaging capability of a conventional microscope 9 . The IFC simultaneously captures fluorescent and brightfield (BF) images at rates of more than 1,000 cells per second that enables several different structures within the cell to be analyzed in tens of thousands of cells in just a few minutes 7 . All BF and fluorescent images captured from IFC are stored in sample specific data files that allows analysis to be performed at any time Scientific RepoRtS | (2020) 10:12716 | https://doi.org/10.1038/s41598-020-69460-7 www.nature.com/scientificreports/ post-acquisition using software such as the Image Data Exploration and Analysis Software (IDEAS). Within IDEAS, all dots on a scatter plot can be selected to display all corresponding imagery, which permits the creation of hand-selected ground truth populations based on visual confirmation of images containing desired features. This in turn, allows for the development of, efficient and informed gating strategies which can easily be applied to many data files using the batch processing option within the software. Furthermore, desired statistics such as the total number of gated events, intensity of fluorescence as well as quantitative measurements of morphological features (e.g. area, circularity, staining homogeneity, etc.) on a cell-by-cell basis, can be generated and exported 10 . The objective of this study was to validate a panel of leukocyte protein biomarkers (ACTN1, BAX, DDB2, FDXR, phospho-p53 (p53) and TSPYL2) identified in our earlier work 8 to reconstruct absorbed dose in peripheral blood in vivo using humanized NOD scid gamma (Hu-NSG) mice and non-human primates (NHPs) after total body irradiation (TBI) exposure. The candidate biomarkers are known to be associated with radiationinduced apoptosis, DNA damage and cellular senescence. Briefly, ACTN1 is an actin binding protein regulating actin cytoskeleton, and is one of the cellular senescence related proteins 11,12 . BAX is a well-known regulator in radiation-induced apoptosis through ATM and CHK2 mediated p53 activation 13 . DDB2 is a protein associated with nucleotide excision repair and has a key role in DNA damage recognition 14 . FDXR is a mitochondrial flavoprotein transferring electron from NADPH to cytochrome P450 which can be induced by DNA damage and is involved in p53 and oxidative stress-mediated apoptosis 11,15 . TSPYL2 is important for G1 checkpoint maintenance upon DNA damage 16 . In this work, we used IFC technology to rapidly quantify changes in these intracellular biomarker expression levels using a small amount of blood for high-throughput screening.
Hematopoietically humanized mice represent an alternative model to study the in vivo human biological response after ionizing radiation exposure. Since the description of immunodeficient mice bearing mutations in the IL2 receptor common gamma chain (IL2rg null ) in the early 2000s, investigators have been able to engraft murine recipients with human hematopoietic stem cells (HSCs) that develop into functional human immune systems 17 . Hu-NSG mice may be generated following the transplantation of HSCs derived, for example, from bone marrow 18 , umbilical cord blood 19 , fetal liver 20 or mobilized peripheral blood 20 into NOD-scid IL2rg null mice (NOG or NSG) mice or other strains, leading to the development of humanized hematopoietic progenitor and differentiated cells in the mouse bone marrow, spleen and thymus [20][21][22] . Recently, we have used the Hu-NSG model for radiation studies to support the development of biodosimeters to estimate absorbed dose in human blood leukocytes 8,23 .
The NHP model is considered the gold standard animal model for drug development 24 whereby the NHP provides > 93% DNA sequence homology with humans 25 , and a high level of similarity in terms of response to physiological pathways and cell receptors 26,27 . The NHP model has also been used to study radiation response and injury 25 providing important information about the dose response relationships and mitigation of hematological effects 28,29 , injury to the lung 30 and gastro-intestinal system 31 after ionizing radiation exposure. Recent studies have also shown persistent nuclear damage and gene expression changes in peripheral blood samples after exposure to 10 Gy ionizing radiation to the NHP whole thorax 27 .
Presented here, the Hu-NSG mice studies were designed to measure FAST-DOSE biomarker expression levels in human blood leukocytes at multiple early time points (days 1, 2 and 3) after acute-dose (0, 1 and 3 Gy) radiation exposure whereas for the NHP study, the dose range was expanded to 10 Gy TBI (0-6, 8 and 10 Gy) and biomarker levels were measured at specific time points up to 8 days (days 2, 4 and 8) post-exposure. Dose estimation algorithms were developed using univariate or multivariate linear regression analysis based on individual biomarker levels and their combination was used to estimate absorbed radiation dose in blood leukocytes. The FAST-DOSE assay biomarkers were able to generate delivered dose estimates within ± 0.04-0.61 Gy, at days 1, 2 and 3 after exposure in humanized mice, whereas in the NHP blood samples from fewer animals, the biomarkers were able to successfully classify samples by dose categories below or above 2 Gy.

Reconstitution of human hematopoietic cells in humanized mice.
Recipient NSG mice showed successful engraftment 3 months after injection of human fetal liver stem cells (CD34+ cells). Forty-six generated humanized mice had 61.1 ± 19.3% human cells (CD45 +), mostly human B and T cells. Figure 1 shows the  Figure 1 shows that in general, exposure to X rays decreased human leukocytes (p = 0.014). On day 1 postirradiation, human B cells were significantly decreased at 1 Gy (p < 0.001), while human leukocytes, T cells and B cells were all significantly decreased at 3 Gy (p = 0.029 and p < 0.001, respectively). On days 2 and 3 post-irradiation, human leukocytes, T cells and B cells were all significantly decreased after 1 Gy

Quantification of biomarker expression using IFC in human leukocytes in vivo.
Radiation induced protein expression levels were evaluated in human CD45+ cells in vivo from the peripheral blood of the humanized mice using IFC, with data analysis being performed using IDEAS software. The Gradient RMS feature was used to gate on focused cells in the BF channel, permitting eliminations of blurred events. The region boundary was set by visual inspection of cell images in the bright field channel (Fig. 2a). Single cells were then www.nature.com/scientificreports/ selected using a BF Area versus BF Aspect Ratio bivariate plot (Fig. 2b) and human leukocytes were selected by gating on CD45+ cells (Fig. 2c). As apoptotic cells may show a different morphological pattern in BF imagery 32 , they were then excluded using a BF Circularity versus BF Contrast plot (Fig. 2d). The mean fluorescence intensity (MFI) of each biomarker within the single cell population was then computed and exported from the IDEAS software ( Fig. 2e). Representative images (Fig. 2f) of biomarker expression (ACTN1) observed in human CD45+ leukocytes after exposure to X rays (1 Gy and 3 Gy) are shown. We developed a uniform and simplified analysis template to quantify the MFI each biomarker in non-apoptotic CD45+ human leukocytes. This template was then applied to all data files and automatically batch processed within IDEAS. Figure 3 shows the dose response curves for ACTN1, BAX, FDXR and p53 expression from a total of 46 humanized mice, up to 3 days postirradiation. Biomarker intensity for non-irradiated human leukocytes as well as mice irradiated with 1 Gy and 3 Gy X rays show that fluorescence intensity fold change increased with dose and is the highest following 3 Gy irradiation, as expected ( Fig. 3). Associations of biomarker expression and irradiated dose were examined by linear regression, and all biomarkers displayed a dose-dependent response to radiation (p < 0.05; p values are shown in Fig. 3). To assess the diagnostic ability of the biomarkers for high and low dose in Hu-NSG mice, ROC curve analysis was performed to discriminate low doses (0 and 1 Gy) vs. high dose (3 Gy) (Supplementary Table S1).
The results show that all biomarkers individually, were able to discriminate these two groups with AUCs ranging from 0.803 to 0.985, except for BAX at day 3.
Dose reconstruction in humanized mice. Four biomarkers ACTN1, BAX, FDXR, p53 and their combinations were tested by linear regression to reconstruct the delivered dose. Each model was ranked according to information-theoretic support from the data, based on Akaike information criterion (AICc) scores with sample size correction. Since increasing the number of combined biomarkers in a particular model will bring an overwhelming penalty for best-fit predictor of dose in a small sample size cohort, only one or the combination of two biomarkers was selected for this analysis ( Table 1). The results show that ACTN1 at day 1, p53 + BAX at day 2 and p53 at day 3 had the lowest AICc and were selected as best-fit predictor for dose with an accuracy of ± 0.04-0.61 Gy (Table 1 and Supplementary Figure S1). The ability of these multi-protein models to estimate dose including the mean absolute errors and coefficients of determination is shown in Table 1. The results demonstrate that although the combination of four biomarkers does not significantly improve dose estimation due to the penalty of the multiple predictors, they still have a strong association with dose and provide a valuable estimation (Table 1 and Supplementary Table S2). AICc, R 2 and p values were obtained by linear regression analysis for estimated versus delivered doses. SEM: standard error of the mean. MAE: mean absolute error, values were used as indicators to compare the difference between delivered and estimated dose.
Biomarker performance in the NHP model. For the NHP studies, larger blood volumes (1-2 mL) permitted the extension of the biomarker panel to include DDB2 and TSPYL2 which were identified as highly www.nature.com/scientificreports/ upregulated protein biomarkers following irradiation in our previous proteomic study 8 . Biomarkers ACTN1, BAX, DDB2, FDXR, TSPYL2 and p53 in NHP samples were tested over a wider dose range up to 10 Gy, on days 2, 4 and 8 after in vivo TBI exposure. Compared to the Hu-NSG study, fewer NHPs were irradiated and the NHP samples were divided into 3 dose groups: low dose (0-1 Gy; n = 25), medium dose (2-5 Gy; n = 8) and high dose (6-10 Gy; n = 11). Measurements of fold change indicate that biomarker expression levels are significantly higher at the medium to high dose range compared with the low dose (< 1 Gy) at day 2, day 4 and day 8 (the exact p values are marked in Fig. 4). In general, biomarker expression does not increase further after exposure to the high doses of radiation, except for DDB2 at day 8.
To assess the diagnostic ability of the biomarkers for radiological triage 33 , we performed ROC curve analysis to discriminate radiation doses below 2 Gy from doses equal to or above 2 Gy (Supplementary Figure S2 and Table 2). The results show that all biomarkers individually (except for p53 at day 8), were able to discriminate these two groups with AUCs ranging from 0.741 (FDXR at day 2) to 0.996 (ACTN1 at day 2). Furthermore, biomarkers BAX, p53, DDB2 and TSPYL2 performed better at the earlier time points (day 2 or day 4) while FDXR provided a better diagnostic power at the later time point (Day 8). Of note, ACTN1 provided the best discriminating potential to identify doses below 2 Gy and doses equal to or above 2 Gy at all three time points.
All six biomarkers were combined by first fitting the data to a multiple linear regression model (Supplementary Table S3) followed by ROC curve analysis. The calculated AUCs using the model fitted values across data points was > 0.97 (Supplementary Figure S2 and Table 2), indicating excellent discriminating power to identify doses equal to or above 2 Gy.

Discussion
In the event of a radiological catastrophe, immediate triage would be accomplished through a combination of physical dosimetry, history of an individual's location, clinical signs and symptoms, and individual hematology assessment, along with other biodosimetry methods 34 . The development of FDA-approved biodosimeters for early population triage has the potential to save hundreds of thousands of lives following a mass-casualty nuclear disaster. As far as we are aware, no biodosimetry methods have been approved by the U.S. Food and Drug Administration (FDA) 35 . Towards FDA approval, we have developed the FAST-DOSE assay system, a simple protein biomarker-based triage assay for the rapid immune-detection of radiation-responsive proteins in small volume blood samples.
One of the challenges for biodosimetry studies is that there is no perfect model for biomarker response indicative of human response days after radiation exposure, thus limiting the development and validation of biodosimeters. To date, the development and validation of radiation responsive biomarkers in vivo has relied heavily on rodent, minipig and more recently NHP models 23,[36][37][38][39][40] . In the present work, we used two animal models, Hu-NSG mouse and NHP to support our FAST-DOSE biodosimetry device to estimate delivered dose using peripheral blood samples for early triage decisions within 8 days after radiation exposure.
Previously, we used Hu-NSG mice as an alternative model to validate human radiation biodosimetry standards and used the human hematopoietic system to investigate candidate protein marker expression in vivo after radiation exposure 8,34 . In the present study, we engrafted NSG mice with human fetal CD34+ stem cells to enrich the number of human cells in the mouse blood 41 . The advantage of this model is that the injected CD34+ cell population is enriched with CD38-stem cells leading to faster engraftment (12 weeks as opposed to 16 weeks for cord cells) and higher levels of sustained mature human cells in the mouse blood 42 . The results show that although human cell engraftment levels were similar to our earlier study 8 , the NSG mice engrafted with human fetal cells showed a larger percentage of surviving human leukocytes; approximately 50% as opposed to 25% using the human cord blood stem cell model measured 3 days after 1 Gy X-ray exposure. This allowed for the use of CD45+ cells from the peripheral blood of the Hu-NSG mice mouse as opposed to the mouse spleen in previous study 8 . Table 1 and Supplementary Figure S1 show the performance of the highest-ranking protein panel to estimate delivered dose in human peripheral blood leukocytes. Doses 1 Gy and 3 Gy were chosen to represent a relatively low and high dose respectively, given that the LD 50/30 of Hu-NSG mice is approximately 3-4 Gy 43 . At these doses, the biomarker data indicate that they were not only able to differ the dose above and below 2 Gy (Supplementary  Table S1), but also to estimate the delivered dose (Supplementary Figure S1). The accuracy for dose estimation was between 0.04 to 0.61 Gy for biomarkers ACTN1, BAX, FDXR and phospho-p53. At the delivered dose of 3 Gy, the mean dose estimation was below 3 Gy across all 3 time points. This is likely due to the relatively high www.nature.com/scientificreports/ www.nature.com/scientificreports/ dose that the mice received whereby biomarker levels have begun to plateau. This was similarly observed for the highest doses used in the NHP model (Fig. 4). The limitation of the study was the small number of human stem cell donors (number = 3) and the reduced number of NHPs per data point. Thus, for some data points, the dose estimation is not within 0.5 Gy. Future studies with additional Hu-NSG mice, along with increasing the number of human stem cell donors may enhance the accuracy of dose estimation. Individually, the top-ranking biomarkers can be used for dose estimation with results showing that ACTN1 at day 1, p53 + BAX at day 2 and p53 at day 3 individually produced relatively good dose reconstruction. However, the fact that human blood samples will be collected from hundreds of thousands of individuals over a wide range of time points following radiological exposure, highlights the potential requirement for the use of a combination of biomarkers for dose reconstruction. This may also extend the window of time relevant for medical decision making for radiological triage 44 .
The FAST-DOSE biomarkers were further tested in peripheral blood samples collected from NHPs exposed to a large range of acute doses up to 8 days after TBI exposure. Compared to the Hu-NSG mouse study, fewer NHPs were irradiated which limited the statistical power for generating dose curves. By grouping NHPs into low (0-1 Gy), medium (2-5 Gy) and high doses (6-10 Gy), the time-dependent variation in biomarker expression for all 6 biomarkers was demonstrated. The results also indicated that ACTN1, BAX, FDXR, phospho-p53 and TSPYL2 biomarker levels plateaued at the highest doses, whereas DDB2 begins to show an apparent dose response at the higher dose range by day 8. Interestingly, ex vivo studies using human blood have also found that DDB2 gene transcription level can estimate relatively higher doses (4 Gy) compared with other genes (CCNG1, BBC3, etc.) that are better suited to estimate low doses only (< 0.1 Gy) 11 . At the gene transcription level, all the biomarkers tested here have been shown to be radiation responsive markers in multiple tissue types 11,13,45,46 while several of them (BAX, FDXR, DDB2 and p53) have been used in the development of a gene expressionbased signature for the reconstruction of dose in human peripheral blood 45,[47][48][49][50] . We consider that future studies should further investigate the gene to protein relationship of these blood biomarkers for radiation biodosimetry.
In the case of a radiological incident, the "classification threshold" is defined as a cut off for the consideration of urgent treatment. Emergency planning guidelines have proposed a threshold dose of 2 Gy, such that individuals exposed to doses of radiation above 2 Gy are at higher risk for experiencing acute radiation syndrome (ARS). Individuals exposed to doses greater than 2 Gy are more likely to develop life-threatening symptoms of radiation exposure such as hematopoietic ARS (H-ARS; 2-6 Gy) and gastrointestinal ARS (GI-ARS; > 6 Gy) and will therefore benefit most from prompt treatment with appropriate countermeasures 24,51 . Supplementary Figure S2 and Table 2 shows that biomarkers BAX, p53, DDB2 and TSPYL2 performed better at the earlier time points while FDXR provided better dose discrimination power at later time points. Furthermore, ACTN1 provided the best discriminating potential to identify doses below and above 2 Gy at all three time points. When all six biomarkers were combined for ROC curve analysis, the calculated AUCs across data points was > 0.97 across all the days. These results suggest that individually, or in combination, all biomarkers possess potential for use as biodosimeters for radiation triage.
There are several advantages of using IFC technology to quantify the FAST-DOSE protein biomarkers as part of the FAST-DOSE system. IFC permits high throughput cellular image capture, allowing visual confirmation and automated analysis of peripheral blood leukocytes in the IDEAS software. This approach is advantageous over visual microscopy methods which are time consuming, impractical for triage following a radiological emergency and lack the statistical power of higher throughput methods 7,9 . Furthermore, the ability to analyze and quantify the intracellular staining patterns of each biomarker on a cell-by-cells basis using IFC is advantageous over conventional flow cytometry methods 10 , where only whole population intensities can be quantified. In addition, the IDEAS software allows for label-free detection and elimination of apoptotic lymphocytes, which can interfere with biomarker expression, based on only BF cell morphology. The absence of introducing an apoptosis-specific marker to eliminate these events will increase the speed at which samples can be processed and will reduce the cost of performing these assays. Furthermore, the ability to create a common data analysis template that can be applied to all biomarkers increasing the speed with which results can be obtained and reduces the time to answer, a critical consideration following a radiological emergency. We acknowledge that our IFC-based assay system is generally not portable, we anticipate that in the future the FAST-DOSE biomarker(s) can be transitioned and validated for use in a point-of-care (POC) device.
In general, the radiosensitivity of cells is directly proportional to the rate of cell division and is inversely proportional to the degree of cell differentiation 26 . Thus, the hematopoietic system is more susceptible to radiation injury than other organ systems following total body irradiation 26,52 . Figure 1 demonstrated that both human T cells and B cells decreased from day 1 to day 3 following irradiation, with B cells being more sensitive to ionizing radiation, a response that has been demonstrated in other publications by Kachikwu et al. and Bogdandi et al. 53,54 . In the NHP study, leukocyte counts were measured on days 1, 3 and 7 after the irradiation (data not shown). www.nature.com/scientificreports/ As expected, the leukocyte counts significantly decreased with delivered dose at day 3 and day 7. Recently, Hu and colleagues applied their Hemodose model 55 to simulate the temporal profiles of granulocyte, lymphocyte, and platelet counts from two cohorts of Chernobyl accident patients and showed that the depletion kinetics of lymphocytes is early and rapid; reaching the nadir within 1-2 days (5 Gy) and 3-4 days (1 Gy). Although, these findings highlight the importance of blood counts as sensitive biomarkers of radiation exposure, their use as an effective single parameter biodosimeter is limited by the fact that baseline blood cell levels are highly variable within the healthy population and can be highly affected by underlying disorders such as cancer, infection and trauma 56,57 . Future studies are planned to develop a multicolor immunoassay approach for the simultaneous detection of specific FAST-DOSE protein biomarker(s) in combination with surface antigens for specific blood leukocyte sub-types (T cell, B cell neutrophils etc.). The combination of the FAST-DOSE protein panel with hematological blood surface biomarkers also presents a promising approach to provide useful diagnostic information for the severity of hematopoietic ARS in the early days following radiation exposure, as well as potentially increasing the radiation-induced biomarker signal in the mixed-cell blood sample, permitting more accurate dose estimations 58 . As part of further development studies, a large population study should be considered to address biomarker sensitivity to accurately reconstruct absorbed dose. The development of mathematical models to estimate radiation dose based on measured biomarker levels that incorporate demographic and confounding factors such as age, race and sex will be required. The inclusion of potentially confounding populations whereby human subjects tested with various pre-existing medical conditions such as inflammation, trauma etc. could also further help identify the specificity of these biomarkers as well as their applicability limitations.
We also envisage that the FAST-DOSE assay could be adapted for use in the clinic to potentially aid radiotherapy treatment planning. The assay system can easily be configured for the detection of a variety of biomarkers within a complex biological sample and serves as a high-throughput platform for the transition of biomarker(s) and practical assays to the clinic and basic research. For instance, the FAST-DOSE protein panel includes biomarkers involved in DNA repair, apoptosis and senescence in human leukocytes. These endpoints may be useful early predictors of individual sensitivity to acute radiation injury during a variety of radiotherapy treatment regimens to monitor risk and biomarker response among patients which could permit adaptation to avoid negative outcomes from over-or under-dosing (e.g. toxicity or poor tumor control).
This study has presented protein biomarker-based FAST-DOSE biodosimetry system and has demonstrated its feasibility to estimate delivered dose from peripheral blood samples for early triage decisions within 8 days following radiation exposure. Our vision for future development is to construct a more simplified, faster FAST-DOSE assay system whereby biomarkers could be developed and transitioned for use within an FDA-approved, point-of-care (POC) device. Animal irradiation and blood sample collection. Humanized mice. Mice were successfully engrafted by 4-5 months and human cell engraftment was tested according to previous work 34 . X-ray irradiation was performed using X-RAD 320 biological irradiator (Precision X-Ray Inc., North Branford, CT) operated at 320 kVp, a current of 12.5 mA and dose rate of 0.88 Gy/min. For in vivo irradiations, mice were placed in a specifically designed mouse irradiation holder (Precision X-ray). Control mice were sham irradiated. All doses were validated using a Radcal ion chamber (Monrovia, CA) placed in the mouse holder. During the actual irradiations, the delivered dose was measured by placing the ion chamber at the same position into the mouse holder. A total of 46 humanized mice from 3 donors were randomly assigned to 3 irradiation groups 0 Gy (n = 14), 1 Gy (n = 16) and 3 Gy (n = 16). Blood samples were collected on days 1, 2 and 3 after irradiation. Peripheral whole blood samples were collected from each mouse by cardiac puncture using a heparin-coated syringe. Human leukocyte, T cell and B cell counts were determined by flow cytometry using 20 μL of heparinized blood following the standard flow cytometry (CytoFLEX, Beckman Coulter, Pasedena, CA) surface staining protocol as mentioned previously 5,34 . Blood cells were stained with the following human surface biomarkers: CD45, (white blood cell marker, clone HI30, Biolegend, San Diego, CA), CD3 (T cell marker, clone UCHT1; Biolegend), CD20 (B cell marker, clone 2H7; Biolegend). Analyses were performed using CytExpert Software (Beckman Coulter).

Methods
Non-human primates. Irradiations were conducted at LBERI using a research-dedicated 6 MV linear accelerator (LINAC; Clinac 600C, Varian Medical Systems, Palo Alto, CA), and calibrated to ± 2% absolute using a NISTtraceable PTW ionization chamber 58 . A detailed description of the irradiation procedure has been described previously 58 . Briefly, animals fasted overnight were sedated with 10 mg/kg (± 0.5 mg/kg) intramuscular ketamine www.nature.com/scientificreports/ and prior to irradiation were anesthetized with isoflurane (1-3% for maintenance, via face mask inhalation). The animals were exposed to total body photon irradiation (Day 0) except for the 0 Gy (sham) group who were also transferred to the LINAC facility and anesthetized but not irradiated. Irradiation consisted of the mid-plane target radiation dose delivered through a pair of right and left lateral opposed fields, each delivering one-half of the dose at a dose rate of 50-70 cGy/min depending on the individual animal dimension. A total of 44 NHPs were randomly grouped and irradiated up to 10 Gy (0 Gy, n = 23; 1 Gy, n = 2; 2 Gy, n = 2, 3 Gy, n = 2; 4 Gy, n = 2; 5 Gy, n = 2; 6 Gy, n = 3; 8 Gy, n = 4; 10 Gy, n = 4). In addition to standard care methods, the NHPs were administered daily oral antibiotics (Baytril, 5 mg/kg), Flintstones vitamins, and nutritional support (e.g. bananas, apples, oranges) after irradiation as well as fluid support (Prang), special diet (moistened biscuits), and anti-diarrheal as necessary 58 . Peripheral blood samples (1-2 mL) were collected in lithium-heparin vacutainer tubes (Becton-Dickson, Franklin Lakes, NJ) by venipuncture. Samples were collected from pre-irradiation as well as days 2, 4, and 8 post-irradiation and shipped at ambient temperature in insulated shippers (Pelican BioThermal, PN: Series 22-248), initially to a reference laboratory, aliquoted and then sent to FAST-DOSE assay. The total time from the blood draw to the assay was about 48 h.
Imaging flow cytometry assay and analysis. Peripheral whole blood samples from humanized mice Proper negative controls were included for intracellular staining (rabbit polyclonal IgG, Abcam). Secondary antibodies included, goat anti-rat Alexa Fluor 594 (A-11007, Invitrogen, for humanized mice only) and antirabbit Alexa Fluor 488 (A11034, Invitrogen, Waltham, MA). Samples were then washed with phosphate buffered saline (PBS), and measured using the ImageStream MkII Imaging Flow Cytometer (Luminex Corporation, Austin, TX) as described in our previous work [5][6][7] . For NHP cells, DRAQ5 nuclear dye (Life Technology, Carlsbad, CA) was added before measurement. Images of more than 5,000 cells per sample were acquired at 40× magnification using the 488 nm excitation laser. For compensation, cells stained with single fluorescence only were captured using the 488 nm laser with the brightfield and side scatter inactivated. The compensation coefficients were determined automatically by the compensation wizard and all captured images were analyzed within the IDEAS software (Luminex ver. 6.2.187).

Statistical analysis.
One or combination of several biomarker protein was used for reconstructing radiation doses applying linear regression. The capability of candidate biomarkers to estimate dose was compared using mean absolute error (MAE) of estimated dose vs. delivered dose. Overall model fit for sequential models was compared using Akaike Information Criterion with sample size correction (AICc), which accounts for both the statistical goodness of fit and the number of parameters required to achieve this particular degree of fit, by imposing a penalty for increasing the number of parameters. The lower the AICc score, the better the model is.
Variance inflation factor (VIF) was used to quantify the severity of multicollinearity in the multiple linear regression model. Biomarker performance for classifying samples by dose categories below or above 2 Gy in the NHP blood samples was determined based on Receiver Operating Characteristic (ROC) curves, which allow characterization of the discrimination between two well-defined populations. Geometric mean fluorescence intensity (MFI) values were compared by Welch's ANOVA test and Dunn's post hoc test. Two-tailed p values less than 0.05 were considered statistically significant. Statistical analysis was performed using Microsoft Excel 2016 (Microsoft, Redmond, WA) and GraphPad Prism (version 6.01; GraphPad Software, Inc., La Jolla, CA).