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H2O2 mediates the regulation of ABA catabolism and GA biosynthesis in Arabidopsis seed dormancy and germination

H2O2 is known as a signal molecule in plant cells, but its role in the regulation of aqbscisic acid (ABA) and gibberellic acid (GA) metabolism and hormonal balance is not yet clear. In this study it was found that H2O2 affected the regulation of ABA catabolism and GA biosynthesis during seed imbibition and thus exerted control over seed dormancy and germination. As seen by quantitative RT-PCR (QRT-PCR), H2O2 up-regulated ABA catabolism genes (e.g. CYP707A genes), resulting in a decreased ABA content during imbibition. This action required the participation of nitric oxide (NO), another signal molecule. At the same time, H2O2 also up-regulated GA biosynthesis, as shown by QRT-PCR. When an ABA catabolism mutant, cyp707a2, and an overexpressing plant, CYP707A2-OE, were tested, ABA content was negatively correlated with GA biosynthesis. Exogenously applied GA was able to over-ride the inhibition of germination at low concentrations of ABA, but had no obvious effect when ABA concentrations were high. It is concluded that H2O2 mediates the up-regulation of ABA catabolism, probably through an NO signal, and also promotes GA biosynthesis. High concentrations of ABA inhibit GA biosynthesis but a balance of these two hormones can jointly control the dormancy and germination of Arabidopsis seeds.


Introduction
Seed germination is a complex process. Germination incorporates those events that commence with the uptake of water by the quiescent dry seed and terminate with the elongation of the embryonic axis (Bewley and Black, 1994;Holdsworth et al., 2008). Seeds of most angiosperms are dormant at maturity, and the dormancy must be lost before germination can occur (Bewley, 1997). Seed dormancy has been defined by Finch-Savage and Leubner-Metzger as the incapacity of a viable seed to germinate under favourable conditions (Finch-Savage and Leubner-Metzger, 2006). Many factors are involved in seed dormancy regulation, including some plant hormones, such as abscisic acid (ABA), gibberellic acid (GA), and ethylene (Bewley, 1997;Zhou et al., 1998;Ghassemian et al., 2000;Nakajima et al., 2006;Carrera et al., 2008;Holdsworth et al., 2008), some environmental factors, such as light intensity and low temperatures , and several signalling molecules, such as nitric oxide (NO) and some reactive oxygen species (ROS) (Batak et al., 2002;Bethke et al., 2004Bethke et al., , 2006Sarath et al., 2007). However, the mechanisms of dormancy holding and breaking remain unclear because it is unknown how these factors are inter-related. The mechanisms of ABA catabolism and GA biosynthesis regulation are of particular interest.
H 2 O 2 acts as a signalling molecule, participating in a series of processes including plant development, stress responses, and programmed cell death (Pei et al., 2000;Bethke and Jones, 2001;Apel and Hirt, 2004;Foyer and Noctor, 2005). In plants, H 2 O 2 is generated in chloroplasts, mitochondria, and peroxisomes (Mittler et al., 2004). Plasma membrane NAD(P)H oxidase is reported to be the pivotal enzyme involved in H 2 O 2 generation Jeblick, 1995, 1996;Mur et al., 1996;Shirasu et al., 1997). The effect of H 2 O 2 on plant development, stress responses, and programmed cell death has been thoroughly investigated (Pei et al., 2000;Bethke and Jones, 2001;Apel and Hirt, 2004;Foyer and Noctor, 2005). The effect of H 2 O 2 on seed germination has also been researched by some investigators. Fontaine et al. (1994) indicated that thioredoxin reduction by NADPH produced via the oxidative pentose phosphate pathway allows the mobilization of storage proteins of cereals, leading to germination. H 2 O 2 is also regarded as having a function as a promoter of seed germination by oxidizing germination inhibitors in Zinnia elegans seeds (Ogawa and Iwabuchi, 2001). The sources of H 2 O 2 during seed germination are not clear. Bailly et al. (2008) indicated that in the dry state enzymes are probably not active and in this case ROS probably originate from non-enzymatic reactions such as lipid peroxidation or Amadori and Maillard reactions, and in hydrated seeds can be produced during the catabolism of lipids (glyoxysomes) and purines (peroxisomes), respiratory activity (mitochondria), electron transfer in photosystems (chloroplasts), or through the activity of NADPH oxidase (plasma membrane), amine oxidase, and peroxidase (cell wall) or cytochrome P450 (cytosol). They also indicated that accumulated H 2 O 2 during imbibition is essential for seed dormancy breaking ABA plays an important role in a number of physiological processes such as seed maturation, growth, and developmental regulation, seed dormancy, and adaptive responses to environmental stresses (Zeevaart and Creelman, 1988;Hoffmann-Benning and Kende, 1992;Kuwabara et al., 2003;Nambara and Marion-Poll, 2005). In addition, ABA has been shown to be an important positive regulator in both the induction of dormancy during seed maturation and the maintenance of the dormant state in imbibed seeds (Finkelstein et al., 2002;Himmelbach et al., 2003). ABA-deficient mutants in Arabidopsis, such as aba1, aba2, and aao3, show the absence of primary dormancy in mature seeds (Leon-Kloosterziel et al., 1996;Finkelstein et al., 2002;Himmelbach et al., 2003). Some ABA-insensitive mutants such as abi1, abi2, and abi3 also lack or have decreased primary dormancy in mature seeds (Raz et al., 2001;Finkelstein et al., 2002;Himmelbach et al., 2003;Kushiro et al., 2004;Nambara and Marion-Poll, 2005), whereas overexpression of some ABA biosynthesis genes increases seed ABA content and enhances seed dormancy or delays germination (Finkelstein et al., 2002;Kushiro et al., 2004;Nambara and Marion-Poll, 2005;Holdsworth et al., 2008).
Some investigations have shown that ABA catabolism also plays a major role in seed dormancy maintenance and dormancy break. Seeds of the mutant cyp707a2, lacking the key enzyme in ABA catabolism, (+)-abscisic acid 8'-hydroxylase, accumulate much more ABA and show stronger dormancy during imbibition than the wild type (Kushiro et al., 2004;Saito et al., 2004;Okamoto et al., 2006). Earlier results (Liu et al., 2009) also indicated that CYP707A2 plays a major role in ABA catabolism during imbibition and regulates seed dormancy.
GA is a major plant hormone in a number of physiological processes, such as seed germination, stem elongation, leaf expansion, flowering, and seed development (Davies, 1993;Ogawa et al., 2003;Yamauchi et al., 2004). Together with ABA, GA is also involved in seed dormancy and germination control (Ogawa et al., 2003) and is found to promote seed germination in many species (Koornneef and van der Veen, 1980;White et al., 2000;Yamauchi et al., 2004). Inhibitors of GA biosynthesis, such as paclobutrazol (PAC) and uniconazole, reduce seed germination in Arabidopsis (Jacobsen and Olszewski, 1993;Leon-Kloosterziel et al., 1996;Toh et al., 2008). Several GA-deficient mutants, such as ga1-3 and ga2-1, have also delayed seed germination (Koornneef and van der Veen, 1980). It is proposed that GA plays two major roles in stimulating germination in Arabidopsis. The first role is in inducing radicle protrusion apparently by weakening the tissue that surrounds the embryo. The second role is in increasing the growth potential of the embryo, as indicated by the reduced growth rate of GA-deficient embryos (Groot and Karssen, 1987;Ogawa et al., 2003).
The roles of ABA and GA in seed germination control have been indicated to be antagonistic by some investigators (Razem et al., 2006;Weiss and Ori, 2007;Toh et al., 2008). For example, GA induces transcription of a-amylase in the aleurone layer of cereal seeds that is significantly suppressed by ABA (Rogers and Rogers, 1992;Gó mez-Cadenas et al., 2001;Zentella et al., 2002). ABA is also reported to inhibit seed germination by inhibiting GA biosynthesis directly under high temperature (Toh et al., 2008). However, because of the complexity in their signalling pathways, the relationship of ABA and GA is not well understood in terms of their regulation. In this study, it was found that both GA and ABA are under the regulation of H 2 O 2 in seed dormancy. Exogenous H 2 O 2 increases ABA catabolism by enhancing the expression of CYP707A genes. At the same time, H 2 O 2 enhances GA biosynthesis via enhancement of GA biosynthesis genes such as GA3ox and GAw20ox genes. The inhibition of seed germination by a low concentration of ABA is reversed by GA, but apparently GA cannot override the effect of high concentration of ABA. The present results also suggest that the H 2 O 2 -enhanced ABA catabolism requires the participation of NO, another small signalling molecule.

Plant materials
The plants were grown in a growth chamber with a 16 h photoperiod at a photon flux density of ;200 lmol m À2 s À1 at a daytime temperature of 23°C and a night-time temperature of 20°C. In order to minimize the effect of seed maturation and storage conditions, plants of each genotype tested were grown in different sections of the same pot and seeds were harvested at the same time. Seeds were harvested in bulk 30 d after the petals appeared on the first flowers. These seeds maintained stronger dormancy. Only freshly harvested seeds were used in the experiments. The rest of the seeds were stored at -80°C, at which temperature dormancy can be maintained for more than a year (Millar et al., 2006;Fujii et al., 2007).

T-DNA insertion line
The seeds of Arabidopsis thaliana cyp707a2 (SALK_083966) generated by the Salk Institute Genomic Analysis Laboratory (http://signal.sal.edu/) were obtained from the ABRC. The seeds were planted on agar plates containing kanamycin, and the kanamycin-resistant plants were transferred to soil. Seeds were harvested separately from individual plants. Subsequently, to confirm the mutant line as homozygous, PCR was performed with the genomic DNA of cyp707a2 using gene-specific oligonucleotides (LP, AATCCCAAATATGCCTTAGGC; and RP, TATGTGGG-GACTTTGATGGAC).

Germination assay
Fifty seeds were placed in 55 mm diameter Petri dishes with three Whatman No. 1 filter papers and 2.2 ml of sterile double-distilled water or treatment solutions. Plates were then placed in a 21°C growth chamber under continuous light at 100 lM m À2 s À1 for 7 d. The seeds were regarded as germinated when the radicle emerged. Experiments were performed in quadruplicate for each treatment.
Determination of NO NO was detected by the Nitric Oxide (total) Detection Kit (Assay Designs, USA). About 0.2 g of seeds were put into 1.5 ml tubes, then 200 ll of reaction buffer and 100 ll final dilution of NADH were added; 100 ll of water was added to a parallel tube as a control. Then 100 ll of nitrate reductase (NR) was added to the samples and 100 ll of reaction buffer was added to the control tubes. A 400 ll aliquot of reaction buffer without seeds, NADPH, and NR acted as a blank. The blank, control, and sample tubes were mixed well and incubated at 37°C for 30 min. After incubation they were centrifuged at 3000 g for 1 min and 300 ll of supernatant was transformed to a new tube. A 100 ll aliquot of Griess reagent I was added to the control, sample, and blank, and after being well mixed, 100 ll of Griess reagent II was added. The tubes were mixed by shaking and then they were incubated at 25°C for 10 min. The optical density (OD) of samples and controls was measured at 540 nm. The OD of each sample was labelled as ODs and that of each control as ODc. Then the average net OD was calculate and labelled as ODn. Each average ODn¼average ODs-average ODc. Each ODn could be calculated from a standard curve. Sodium nitrate at 0-100 lM was used as a standard, and a standard curve was produced. The amount of NO released was equal to the amount of nitrate. The mechanism of this kit is transformation of NO to nitrite and its measurement.
Extraction and determination of ABA For estimation of endogenous ABA levels of imbibed seeds, 0.2 g of seeds was homogenized in 1 ml of distilled water and then shaken at 4°C overnight. The homogenates were centrifuged at 12 000 g for 10 min at 4°C and the supernatant were directly used for ABA assay. ABA analysis was carried out using the radioimmumoassay (RIA) method as described by Quarrie et al. (1988). The 450 ll reaction mixture contained 200 ll of phosphate buffer (pH 6.0), 100 ll of diluted antibody (Mac 252) solution, 100 ll of [ 3 H]ABA (;8000 cpm) solution, and 50 ll of crude extract. The mixture was then incubated at 4°C for 45 min and the bound radioactivity was measured in pellets precipitated with 50% saturated (NH 4 ) 2 SO 4 with a liquid scintillation counter.

Determination of H 2 O 2
An Amplex Red Hydrogen Peroxide/Peroxidase Assay Kit (Invitrogen, Carlsbad, CA, USA) was used to measure H 2 O 2 production in 2-week-old plants. Leaves were frozen in N 2 and then ground. Then 500 ll of phosphate buffer (20 mM K 2 HPO 4 , pH 6.5) was added to 50 mg of ground frozen tissue. After centrifugation, 50 ll of the supernatant was incubated with 0.2 U ml À1 horseradish peroxidase and 100 lM Amplex Red reagent (10acetyl-3,7-dihydrophenoxazine) at room temperature for 30 min in darkness. The fluorescence was quantified using FLUOStar Optima (excitation at 560 nm and emission at 590 nm) (Xing et al., 2008).

QRT-PCR analysis
Total RNA was isolated from seeds or leaves by an RNeasy kit (Invitrogen). DNA impurities in the isolated RNA were digested before synthesizing the cDNA by adding DNase (Invitrogen) and incubation for 30 min at 37°C. DNase was then inactivated by incubation for 10 min at 65°C. Then 2 lg of RNA was reverse transcribed to cDNA with SuperScriptIII RTS First-Strand cDNA Synthesis Kit (Invitrogen). After that, the cDNA was diluted 10 times, and 4 ll of cDNA was used to carry out the quantitative RT-PCR (QRT-PCR). IQä SYBR Green Supermix (Bio-Rad) was used for the QRT-PCR. Actin2 acted as the intramural standard. Generation of the CPY707A2-overexpressing line Full-length Arabidopsis CPY707A2 cDNA was obtained by using reverse transcription-PCR and cloned into the pENTR-TOPO cloning vector (Invitrogen) and sequenced. After the LR reaction, CPY707A2 cDNA was inserted into the pGWB5 vector (a gift from Professor Liang, Yangzhou University) which had a 35S promoter; this vector was named pGWB5-CPY707A2. Transgenic Arabidopsis containing the cauliflower mosaic virus (CaMV) 35S promoter was generated using the floral dipping method (Clough and Bent, 1998) and transferred into Col-0 wild-type plants. Transformed plants were selected by growth on hygromycincontaining medium. Plants of the second generation after transformation were used for the experiments. The empty pGWB5 vector (the ccdb gene was substituted by a nonsense segment with a termination codon) which acted as control was also transferred into Col-0 wild-type plants.

Accession numbers
Sequence data from the article can be found in the GenBank data libraries or TIGR database (Arabidopsis thaliana Genome Project) under the following accession numbers: At1g20620; and Actin2, At3g18780.

H 2 O 2 reduces dormancy of freshly harvested Arabidopsis seeds
After 7 d of imbibition in 5 mM H 2 O 2 , the dormancy of freshly harvested Arabidopsis seeds was broken. Much higher H 2 O 2 concentrations, such as 100 mM, had less effect (Fig. 1a). The H 2 O 2 effect was further confirmed by supplying DPI, a H 2 O 2 scavenger, to reduce the level of H 2 O 2 (Levine et al., 1994;Alvarez et al., 1998;Lee et al., 1999). As shown in Fig. 1b, DPI enhanced seed dormancy significantly while exogenous H 2 O 2 completely reversed the effect of DPI. When supplied to non-dormant seeds, H 2 O 2 increased seed germination and DPI slightly slowed down the process (Fig. 1c). metabolism. As shown in Fig. 2a, the release of H 2 O 2 from the imbibed seeds rapidly increased in the first few hours and reached a peak at 3 h, followed by a decrease after 6 h. DPI treatment decreased this H 2 O 2 release significantly. When expression of ABA 8'-hydroxylase (CYP707A1, CYP707A2, CYP707A3, and CYP707A4), 9-cis epoxcartenoid dioxygenase (NECD6 and NCED9), GA 20-oxidase (GA20ox1, GA20ox2, and GA20ox3), GA 3-oxidase (GA3ox1 and GA3ox2), and GA 2-oxidase (GA2ox2) was investigated following different treatments during imbibition, the expression of four ABA catabolism genes (CYP707A genes) were induced within a few hours after imbibition of water, and then decreased after 6 h. When imbibed with H 2 O 2 , the transcription level of these four genes increased much more rapidly and was maintained at a high level during the entire imbibition period (Fig. 2a). When release of H 2 O 2 was inhibited by DPI, there was no increase in transcription levels of these four genes compared with water. Further addition of exogenous H 2 O 2 was able to reverse the inhibitory effect of DPI on transcription of the four genes (Fig. 2b). Transcription levels of the ABA biosynthetic genes NCED6 and NCED9 decreased in the water control within the first 6 h of imbibition and then increased. Exogenous H 2 O 2 slightly enhanced the expression of these two genes ( Supplementary  Fig. S1 available at JXB online). Expression of three GA20ox and two GA3ox genes was also significantly induced in the water control in the initial hours of imbibition. As shown in Fig. 2c, transcription levels of all three GA20ox genes increased rapidly during the first 6 h. Levels of GA20ox1 remained high for the entire imbibition period, but GA20ox2 and GA20ox3 transcription levels decreased to a lower level after 6 h. Two GA3ox genes displayed a delayed initiation compared with the GA20ox genes. GA3ox1 reached its maximum at 12 h and decreased thereafter, while GA3ox2 peaked at 24 h. H 2 O 2 enhanced the transcription of all five GA biosynthesis genes to a high level and these elevated levels were maintained throughout the remainder of the imbibition period. DPI significantly inhibited transcription of the five genes, but addition of exogenous H 2 O 2 was able to reverse the DPI inhibition (Fig. 2c). The transcription level of the GA catabolic gene GA2ox2 decreased during the first 6 h of imbibition and increased thereafter. Exogenous H 2 O 2 enhanced this gene expression slightly ( Supplementary Fig. S1 at JXB online).

H 2 O 2 requires NO for regulation of genes involved in ABA catabolism and breaking of seed dormancy
As shown in Fig. 3a, both NO and H 2 O 2 caused dormancy break in freshly harvested seeds. Treatment with DPI or with the NO scavenger c-PTIO enhanced seed dormancy. Treatment with the NO donor SNP substantially reversed the inhibition caused by DPI, whereas exogenous H 2 O 2 failed to reverse the inhibition caused by c-PTIO. The effect of H 2 O 2 and SNP on seed dormancy break could be reversed by the ABA catabolism inhibitor diniconazole, which supposedly inhibits ABA 8'-hydroxylase activity (Fig. 3a).
Earlier results indicated that CYP707A2 was much more abundant than the other CPY707A genes during germination Okamoto et al., 2006), consistent with what was found in the present study (Fig. 3b). Both SNP and H 2 O 2 enhanced CYP707A gene expression, especially that of CYP707A2 (Fig. 3b). Treatment with c-PTIO or DPI decreased CYP707A gene expression. Treatment with SNP reversed the effect of DPI, while exogenous H 2 O 2 treatment was not able to reverse the effect of c-PTIO (Fig. 3b).
The changes in ABA content reflected the expression of ABA catabolic genes. SNP and exogenous H 2 O 2 treatments enhanced ABA catabolic gene expression, while scavengers or inhibitors decreased expression of these ABA genes (Fig. 3c). SNP reversed the inhibitory effects of DPI, but exogenous H 2 O 2 was largely ineffective at reversing the effects of c-PTIO on the expression of ABA catabolic genes.
The apparent requirement for NO to elicit the H 2 O 2responsive expression of ABA catabolic genes and breaking of seed dormancy suggests that H 2 O 2 may also regulate NO production. As shown in Fig. 4a, during imbibition, exogenous H 2 O 2 increased NO production while DPI decreased it. However, SNP and its scavenger c-PTIO showed a slight effect on H 2 O 2 production (Fig. 4b).
Some genes involved in H 2 O 2 production and catabolism were also measured during imbibition. Transcription of all three H 2 O 2 catabolic genes, CAT1, CAT2, and CAT3, decreased rapidly and significantly during the first 3 h of imbibition (Fig. 4c). Transcription of the three NADPH oxidase genes, which are involved in H 2 O 2 production, showed no change in the first 6 h of imbibition (Fig. 4d). Accumulation of H 2 O 2 at the first stage of imbibition was apparently related primarily to decreasing H 2 O 2 catabolism.

The expression of GA biosynthesis genes is enhanced by H 2 O 2
Treatment with PAC, which inhibited GA biosynthesis (Kitahata et al., 2005;Toh et al., 2008), enhanced seed dormancy, and the enhancement of germination by H 2 O 2 and NO could be reversed by PAC (Fig. 5a). When    (n¼3 for a-d). An ANOVA test followed by a rank test was performed. Different letters are used to indicate means that are significantly different (P <0.05). expression of GA biosynthesis genes was investigated after 24 h imbibition, the transcription of the GA20ox and GA3ox genes was significantly up-regulated by exogenous H 2 O 2 , slightly up-regulated by SNP, and down-regulated by DPI and c-PTIO (Fig. 5b, c). The down-regulation by c-PTIO was reversed significantly by addition of exogenous H 2 O 2 , but this enhanced value was still low compared with seeds imbibed in H 2 O 2 (Fig. 5b, c). The inhibition by DPI was increased slightly by addition of SNP (Fig. 5b, c).
Expression of two GA-regulated genes, XTH5 and EXP2, was also measured after 24 h imbibition under different treatments (Rose et al., 2002;Yamauchi et al., 2004). Both XTH3 and EXP2 transcription levels were increased significantly by H 2 O 2 and slightly by SNP, but were decreased by DPI and c-PTIO. Exogenous H 2 O 2 reversed the effect of c-PTIO while SNP caused only a minimal reversal of the DPI effect (Fig. 5d).

H 2 O 2 enhances and ABA suppresses the expression of GA biosynthesis genes
Treatment with H 2 O 2 enhanced expression of GA biosynthesis genes during imbibition. It was therefore hypothesized that GA biosynthesis is up-regulated by H 2 O 2 and suppressed by ABA. To examine this possibility, the ABA catabolism mutant cyp707a2 and its overexpression line CYP707A2-OE were used. As shown in Fig. 6a, the cyp707a2 mutant showed an absence of CYP707A2 gene expression while CYP707A2-OE had a high level of CYP707A2 gene expression. Freshly harvested cyp707a2 seeds showed strong dormancy, while CYP707A2-OE seeds had a much weaker dormancy response compared with wild-type seeds (Fig. 6b). After 24 h imbibition, cyp707a2 seeds retained a high ABA content whereas ABA levels in CYP707A2-OE seeds were much lower (Fig. 6c) H 2 O 2 and GA (10 lM) clearly enhanced germination of freshly harvested cyp707a2 seed, while NO did not (Fig. 7a). CYP707A2-OE germination was inhibited completely by treatment with 0.5 lM exogenous ABA (Fig. 7a). QRT-PCR analysis demonstrated that the transcription of GA3ox genes was enhanced by exogenous H 2 O 2 rather than by SNP after 24 h imbibition in cyp707a2 (Fig. 7b). These results indicated that it was H 2 O 2 rather than NO that exerts a regulatory effect on the expression of GA biosynthetic genes. QRT-PCR analysis also indicated that the transcription of GA3ox genes was high in CYP707A2-OE and was significantly decreased by treatment with 0.5 lM ABA (Fig. 7b). Expression of GA3ox genes was much lower in cyp707a2 compared with the wild type and CYP707A2-OE (Fig. 7b, c). Thus, ABA treatment appeared to suppress expression of GA biosynthesis genes.
The empty pGWB5 vector showed no effect on expression of any gene (data not shown). The transcription levels of the GA-regulated genes XTH5 and EXP2 were similar to those of GA3ox genes. In the cyp707a2 mutant, expression of these genes was enhanced by treatment with exogenous H 2 O 2 but not by SNP after 24 h imbibition (Fig. 7c). Transcription of XTH5 and EXP2 was down-regulated by ABA in CYP707A2-OE after 24 h imbibition (Fig. 7c), suggesting that XTH5 and EXP2 transcription was much lower in cyp707a2 compared with the wild type and CYP707A2-OE (Figs 5d, 7c). All of these results suggest that H 2 O 2 enhances GA biosynthesis while ABA suppresses GA biosynthesis.

Discussion
It is well known that ABA and GA play important roles in seed dormancy and germination (Finkelstein et al., 2002;Himmelbach et al., 2003;Ogawa et al., 2003;Razem et al., 2006;Weiss et al., 2007;Toh et al., 2008). Studies on numerous mutants have demonstrated that ABA catabolism and GA biosynthesis are required for seed germination (Koornneef and van der Veen, 1980;Groot and Karssen, 1987;Ogawa et al., 2003;Kushiro et al., 2004;Saito et al., 2004;Okamoto et al., 2006). The results from the present study may have clarified a signalling pathway for the mechanisms underlying these responses. A rapid NOinduced decrease in ABA is essential to break seed dormancy in Arabidopsis. Based on the present results, H 2 O 2 , acting as a signalling molecule, could regulate seed ). An ANOVA test followed by a rank test was performed for b and c. Different letters are used to indicate means that are significantly different (P <0.05) dormancy by triggering both ABA catabolism and GA biosynthesis. The up-regulation of ABA catabolism by H 2 O 2 would be carried out through NO. Concomitantly, as long as a high concentration of ABA exists, it inhibits the expression of GA biosynthesis genes so that a balance of these two hormones jointly controls the dormancy and germination of Arabidopsis seeds (Fig. 8).
As shown in Fig. 1, exogenous H 2 O 2 decreased dormancy in freshly harvested seed. Inhibiting H 2 O 2 production in turn enhanced seed dormancy. The action of H 2 O 2 was associated with expression of genes related to ABA and GA biosynthesis and catabolism. Exogenous H 2 O 2 treatment clearly increased the expression of CYP707A, GA3ox, and GA20ox (Fig. 2b, c) and decreased seed dormancy (Fig. 1b). Using DPI to inhibit H 2 O 2 decreased the expression of CYP707A, GA3ox and GA20ox genes (Fig. 2b, c) and enhanced seed dormancy (Fig. 1b). It was also observed that the inhibition by DPI of the expression of these genes and of seed germination was completely reversed by exogenous H 2 O 2 .
When ABA catabolism and GA biosynthesis were directly inhibited by diniconazole and PAC, the enhancement of seed germination by H 2 O 2 disappeared (Figs 2, 4). H 2 O 2 showed a slight effect on expression of genes involved in ABA biosynthesis and GA catabolism compared with its effects on expression of genes involved in ABA catabolism and GA biosynthesis ( Fig. 2 and Supplementary Fig. S1). These results indicated that the effect of H 2 O 2 on seed dormancy break might be connected with transcription of genes involved in both ABA catabolism and GA biosynthesis.
A role for NO, another widespread signalling molecule, in breaking of dormancy was also apparent. Up-regulation of genes responsible for ABA catabolism by H 2 O 2 required the participation of NO. The enhancement of seed germination by H 2 O 2 treatment was significantly reversed by the NO scavenger c-PTIO. DPI inhibited H 2 O 2 generation and enhanced seed dormancy, but these effects were substantially reversed by addition of the NO donor SNP (Fig. 3a). Use of c-PTIO as an NO scavenger reversed the effect of H 2 O 2 on the expression of CYP707A genes and of ABA catabolic genes (Fig. 3b-d). Treatment with H 2 O 2 also modulated NO release during imbibition (Fig. 4a, b), and the accumulation of H 2 O 2 at the first stage of imbibition, primarily by decreasing H 2 O 2 catabolism (Fig. 4c, d).
The regulation by H 2 O 2 of expression of GA biosynthetic genes is different from its effects on genes involved in ABA catabolism. Although SNP, similarly to H 2 O 2 , increased  seed germination (Fig. 5a), SNP did not significantly increase transcription of GA biosynthetic genes when compared with H 2 O 2 (Fig. 5b,c). SNP could not reverse the inhibition by DPI of transcription of GA biosynthesis genes, while exogenous H 2 O 2 substantially restored the inhibition induced by c-PTIO (Fig. 5b, c). In particular, when the cyp707a2 mutant was used to measure the effect of H 2 O 2 and NO on GA biosynthesis, it was found that SNP had no effect on transcription of GA biosynthesis genes, while H 2 O 2 increased this transcription (Fig. 7b, c), It was also found that the expression of GA3ox genes was much lower in cyp707a2 than in the wild type imbibed with water or exogenous H 2 O 2 (Figs 5c, 7b). The enhancement of seed germination induced by exogenous H 2 O 2 and GA was also much lower in cyp707a2 compared with the effects on the wild type (Figs 3a, 7a). As shown in Fig. 6c, cyp707a2 had higher ABA levels compared with the wild type and CYP707A2-OE. The present results also support the conclusion that ABA down-regulated genes responsible for GA biosynthesis and ABA catabolism, both of which are functions that are necessary for breaking seed dormancy.
The transcription of GA biosynthesis genes was suppressed by exogenous ABA (Fig. 7b). From these results, it can be hypothesized that H 2 O 2 could directly regulate GA biosynthesis and indirectly regulate ABA catabolism. The effect of SNP on GA biosynthesis may occur via regulation of ABA catabolism during imbibition. The results also suggest that GA reverses the inhibitory effect of a low concentration of ABA on seed germination but GA alone is insufficient to reverse germination inhibition when the ABA content is high (Fig. 8). Thus, ABA may regulate seed germination by two pathways, one that acts directly on some as yet uncharacterized factors and the second that acts through the regulation of GA biosynthesis. The data presented in Figs 3 and 5 indicate that even at low concentrations of ABA and under H 2 O 2 and SNP treatments, the seeds failed to germinate if GA biosynthesis was inhibited by diniconozole or PAC. This indicates that both ABA catabolism and GA biosynthesis are absolutely necessary for seed dormancy break. Figure 9 shows a hypothetical schematic model that could explain the results documented in the present paper. In this scheme, H 2 O 2 may relieve dormancy of freshly harvested Arabidopsis seeds by two pathways. One pathway relies on enhancement of ABA catabolism and GA biosynthesis. The signal molecule NO does not regulate GA biosynthesis directly, but acts as an interim signalling molecule involved in H 2 O 2 regulation of ABA catabolism. In the second pathway, ABA negatively regulates GA biosynthesis. In this way, both ABA and GA act in concert to regulate seed dormancy and germination.

Supplementary data
Supplementary data are available at JXB online. Figure S1. Effects of H 2 O 2 on the expression of ABA biosynthesis and GA catabolism genes during imbibition.  up-regulates ABA catabolism through NO, and also GA biosynthesis. A high concentration of ABA also inhibits GA biosynthesis, but a balance of these two hormones jointly controls the dormancy and germination of Arabidopsis seeds.