{'fraction_non_alphanumeric': 0.030948121645796065, 'fraction_numerical': 0.012343470483005367, 'mean_word_length': 4.9860813704496785, 'pattern_counts': {'":': 0, '<': 2, '<?xml version=': 0, '>': 0, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
Reaction Path Description and Internal-Mode Dynamics of MolecularRearrangement in HO2

After brief general remarks and definitions for the reaction path concept in view of formulating physically 
transparent and computationally feasible theoretical models, the HO2 system is studied for both the 
bimolecular exchange reaction and the intramolecular H transfer (isomerization). The analysis includes 
potential energy surface topography, reaction profiles and internal-mode dynamics.

The theoretical treatment of molecular rearrangement processes, according to the standard methodology, is still a formidable task, in particular for polyatomic systems. In the last decade, following the pioneering work of Miller, Handy and Adams, much effort has been made to formulate the theory in a compact way retaining only those features of the problem which are dynamically essential. The basic idea is that some kind of reaction path (RP) must exist, since the molecular rearrangements are frequently local phenomena, whence the expectation that a reduced treatment should be possible by means of (i) a static (i.e. range) reduction to that part of the configuration space which is energetically relevant (the RP and its near environment); (ii) a dynamic (i.e. dimensional) reduction to that subspace of the configuration space which is dynamically relevant. 2 The aim of the present paper is to illustrate such ideas for the simple system HO2.

THE REACTION PATH CONCEPT: DEFINITIONS
The RP for a molecular rearrangement is defined as the curve of least energy connecting, on the potential energy surface, two local minima via a first-order saddle point. 3 The arc length of the RP, s, is properly identified with the reaction coordinate (RC), and the potential energy function along the RP, Uo(s), is frequently called the reaction profile. If, along the RP, a local normal mode analysis is performed pointwisely, the non-zero vibrational frequencies, obtained by diagonalizing a properly projected Hessian matrix, belong to the so-called transverse modes orthogonal to the RP. From the corresponding eigenvectors, the couplings of these modes to one another, to the RP and to the external modes (overall translation and rotation of the whole system) can be calculated.  4 In Figure 1, the reaction profile for the exchange process is presented showing, at s 0, the deep minimum for stable HO2 (-2.305 eV with respect to H + O2, respectively); the arrow indicates the top of the isomerization barrier. The transverse mode frequencies along the RP are plotted in Figure 2.
Around the entrance channel saddle point, the upper curve, connecting the O2 vibrational frequency at low s with the OH frequency at large s, and the lower curve representing the bending frequency which goes to zero on both ends (free rotation of diatomic fragments), come close together. In this region, the two transverse modes interact strongly with one another and with the RP (see Figures 3 and 4). Three other peaks of the coupling of the bending transverse mode with the RP are clearly observed in Figure 4; they likewise indicate regions of strong curvature of the RP. These findings are in rough accordance with those previously obtained 5 in using the potential of Melius and Blint. 6 The same analysis for the isomerization RP gives the potential profile and the transverse mode frequencies presented in Figures 5 and 6, respectively. The frequencies in Figure 6 have been identified as bending (lower) and OH stretching (upper), respectively. They evolve smoothly along the isomerization RP. Strong intermode coupling and mode-RP coupling only occur in the vicinity of the HO2 absolute minimum.
After the above (static) analysis of the interaction potential and of the behaviour of the different modes in the RP representation, we have investigated the dynamics of HO2 by running classical trajectories for energies ranging from the vibrational ground state up to above the isomerization barrier but below the fragmentation energies: -1.953 eV < Etotal < --0.68 eV. The initial conditions were chosen so as to fit normal vibrational states of HO2. The results have been Fourier analyzed by calculating the quantity. .
for the dynamical variable X(t) r(t) + r2(t) + r3(t) i.e. the sum of the three internuclear distances, so as to detect all internal motion frequencies. A few selected results are presented in Figure 7; the ordinate is for the quantity (I1/2(c0)), where the brackets denote the ensemble average over the initial vibrational phases.
For vibrational energies below the isomerization barrier (1.191 eV) we have definitely a line spectrum corresponding to the three normal vibrations with quanta 1124 cm -1, 1782 cm -1 and 2775 cm -, respectively (see Figure 7a and b). Further excitation of the first vibrational mode only (which correlates with the isomerization RP) leads to the onset of chaotic motion (Figure 7c). Nevertheless, some mode specificity is still observable in Figure 7c, whereas, in Figure 7d which is for about the same total energy but for a different distribution over the modes, the frequency bands are much broader, whence mode specificity is lost and strongly chaotic vibrational motion is established. Hamiltonians. 1'2'7'8 (2) The dynamical findings concerning mode coupling, energy exchange and onset of stochastic dynamics indicate whether it is possible to introduce dynamical simplifications like system-bath decomposition of the system, statistical approximations etc. 9'2 Case studies as presented here can help to elucidate the main features of dynamical phenomena.