Analysis plugins

Analysis plugins - Jump to: Sequence Similarity | Sequence Comparison | Locus Explorer

Sequence Similarity

Summary: Find sequences most similar to selected allele

This plugin will return a list of the most similar alleles to a selected allele, along with values for percentage identity, number of mismatches, and number of gaps. Clicking on the link for each returned match will lead to a sequence comparison page, identifying the exact nucleotide/amino acid differences between the query and most similar sequences.


Launch 'Sequence Similarity'

Sequence Comparison

Summary: Display a comparison between two sequences

This shows the nucleotide/amino acid differences between two selected alleles/variants.


Launch 'Sequence Comparison'

Locus Explorer

Summary: Tool for analysing allele sequences stored for particular locus

This plugin generates a schematic showing the polymorphic sites within a locus, calculate the GC content, codon usage, and generate aligned translated sequences for selected alleles.


Launch 'Locus Explorer'