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Quantitative evaluation of malignant gliomas damage induced by photoactivation of IR700 dye

Abstract The processes involved in malignant gliomas damage were quantitatively evaluated by microscopy. The near-infrared fluorescent dye IR700 that is conjugated to an anti-CD133 antibody (IR700-CD133) specifically targets malignant gliomas (U87MG) and stem cells (BT142) and is endocytosed into the cells. The gliomas are then photodamaged by the release of reactive oxygen species (ROS) and the heat induced by illumination of IR700 by a red laser, and the motility of the vesicles within these cells is altered as a result of cellular damage. To investigate these changes in motility, we developed a new method that measures fluctuations in the intensity of phase-contrast images obtained from small areas within cells. The intensity fluctuation in U87MG cells gradually decreased as cell damage progressed, whereas the fluctuation in BT142 cells increased. The endocytosed IR700 dye was co-localized in acidic organelles such as endosomes and lysosomes. The pH in U87MG cells, as monitored by a pH indicator, was decreased and then gradually increased by the illumination of IR700, while the pH in BT142 cells increased monotonically. In these experiments, the processes of cell damage were quantitatively evaluated according to the motility of vesicles and changes in pH.


Introduction
Malignant gliomas show high invasiveness and spread rapidly via metastasis.
Radiotherapy and chemotherapy have been used to eliminate tumor cells because surgical removal of gliomas is often difficult [1][2][3][4]. However, tumor cells that survive therapy have a high probability of forming secondary tumors. In particular, recent studies showed that gliomas contain cancer stem cells that are resistant to therapy [5][6][7]. Therefore, these stem cells are assumed to be one of the main causes of gliomas recurrence [8,9], and selective removal of cancer stem cells is crucial for gliomas therapy.
Drug delivery systems (DDS) and photodynamic therapy (PDT) have greatly advanced the selective removal of tumor cells with high specificity and low adverse effects [10][11][12][13][14]. 5-aminolevulinic acid (5-ALA) was used to image the area of malignant gliomas during a surgery [15]. Malignant gliomas have been treated with various photosensitizers such as Photofrin®, Laserphyrin®, and Foscan®. These phototoxic dyes were specifically delivered to malignant tumors via an enhanced permeation and retention effect. To enhance the specificity of these treatments for cancer cells, medicines and dyes are often labeled with a cancer antibody. One such phototoxic dye, IR700, is activated by infrared light that transmits well in tissues [16,17]. Recently, clinical trials investigating the photoimmunotherapy effect of IR700 labeled with the antibody have been initiated in the USA. To maximize the specificity and removal of cancer cells by IR700, it is very important to quantitatively evaluate the processes of cell damage and cell death. However, the details of these processes have not been clearly defined.
In this study, we quantitatively evaluated the photoimmunotherapy effects of IR700 on tumor cell damage. IR700 was conjugated to an anti-CD133 antibody, which specifically targets malignant gliomas and stem cells is endocytosed into the cells. The process of cell damage was evaluated by image analysis obtained by phase-contrast and fluorescence microscopy. This study developed a new and easy method for the quantitative evaluation of cell activity and damage through the measurement of intensity fluctuation in phase-contrast images.
Specifically, acidic vesicles containing IR700 were damaged by the activation of IR700, causing permeabilization of the vesicle membrane, which resulted in cell death.

2-1. Materials
Near-infrared fluorescent dye, IRDye 700DX NHS ester (IR700), was purchased from LI-COR Bioscience. LysoTracker Yellow HCK-123, pHrodo Green AM (Intracellular pH Indicator), and anti-rabbit IgG (H+L) labeled with AlexaFluor 568 were purchased from ThermoFisher Science. PKH26 Linker Kit was purchased from Sigma-Aldrich Co. LLC. Rabbit anti-CD133 antibody and goat anti-Rabbit IgG (H+L) were purchased from Biorbyte and ThermoFisher Science, respectively. The Annexin-V-Cy5 Apoptosis Detection Kit was purchased from BioVision, Inc. Ethidium homodimer-1 (EthD-1), paraformaldehyde, sodium dihydrogen phosphate dihydrate and sodium dihydrogen phosphate were purchased from Wako Pure Chemicals. Glioma stem cells (BT142 class 3) and gliomas (U87MG, class 4) were purchased from the American Type Culture Collection (ATCC). NeuroCult NS-A basal medium and proliferation supplement were purchased from VERITAS, and platelet-derived growth factor (PDGF), epidermal growth factor (EGF) and fibroblast growth factor (FGF) were from PeproTech Inc. Dulbecco's modified Eagle's medium (DMEM) was purchased from Sigma, and Dulbecco's modified phosphate-buffered saline (PBS) was purchased from Takara Bio Inc. Fetal bovine serum (FBS) was purchased from GIBCO, penicillin-streptomycin was purchased from Wako Pure Chemicals, and the TrypLE express enzyme was purchased from ThermoFisher Science.
Glass-bottom dishes were purchased from Matsunami Glass Ind., Ltd.

2-2. Conjugation of IR700 with anti-CD133 antibody
IR700 and the anti-CD133 antibody were conjugated using the protocol described by Mitsunaga et al [16]. IR700 (11.3 g or 5.8 nmol resolved in DMSO to a concentration of 2.5 mol/L) and goat anti-rabbit IgG (121.8 g or 0.8 nmol resolved in PBS to a concentration of 13.3 mol/L) were reacted in a solution containing 10 mM Na 2 HPO 4 (pH: 8.0) for 2 hours at room temperature. Then, the IR700 and anti-rabbit IgG complex was mixed with the rabbit anti-CD133 antibody to prepare the conjugate of IR700, anti-rabbit IgG and anti-CD133 (IR700-CD133).

2-3. Preparation of gliomas
BT142 cells were cultured and formed neurospheres in medium-BT (NS-A basal medium supplemented with 10% V/V proliferation supplement, 20 ng/mL EGF, 20 ng/mL FGF, 100 ng/mL PDGF, 2 g/mL heparan sulfate and 100 U/mL penicillin). The cells were triturated with a micropipette to produce a single-cell suspension. The single cells were seeded onto glass-bottom dishes at a concentration of 1.0 × 10 4 cells/mL. Adherent U87MG cells were cultured in medium-U (DMEM supplemented with 10% FBS, 100 U/mL penicillin). After establishing confluent culture at 37°C with 5% CO 2 and 95% air, the cells were recovered by treatment with the TrypLE express enzyme (1×). Recovered cells were seeded at a concentration of 1.0 × 10 4 cells on a glass-bottom dish coated with 2% collagen, and cells were incubated for one day in medium-BT after initial adhesion.

2-4. Preparation of gliomas
U87MG and BT142 cells from the glass-bottom dishes were loaded with 10 and 40 nM of IR700-CD133 in medium-BT and incubated for 1 hour at 37°C with 5% CO 2 and 95% air. After washing with medium, the dishes were placed on a microscope stage with a controlled temperature and CO 2 concentration. Confocal images of LysoTracker and IR700 excited by the blue and red lasers were captured simultaneously by two EM-CCD cameras (iXon 3 and iXon+, Andor Technology Ltd.) at a rate of 10 frames/s. The confocal images of the pH indicator excited by the blue laser were observed with the EMCCD camera during irradiation of IR700 by the red laser.

2-6. Calculation of intensity fluctuation to evaluate cell damage
The motility of the vesicles in the cells changed as the cell damage progressed.
The motility of the vesicles was measured by the fluctuation of intensity in phase-contrast images of cells obtained by illumination with a halogen lamp. The phase-contrast images of cells were obtained for 60 s at a rate of 10 frames/s. The images were processed with a special band-pass filter from 390 to 1,300 nm to enhance the structure of the vesicles with ImageJ software (center panel in Figure 1(a)). Then, the number of pixels in the filtered images was reduced by binning 4x4 pixels. The intensity fluctuation of binned pixels for a given time was calculated by the standard deviation (<I>) of the intensity divided by the mean intensity (<I>) (upper panel in Figure 1(b)). The power spectra of the intensity were high and decreased steeply at <0.33 Hz (Figure 1(c)). Spectra <0.33Hz indicated cell motility. To avoid cell motility, the fluctuations, <I>/<I>, in binned pixels were averaged over 30 frames or 3 s. Then, 20 fluctuation data points were averaged over 1 m to reduce the noise (lower panel in Figure 1(b)). Finally, fluctuation values averaged over 1 m in all binned pixels are shown by a heat map (right panel in Figure 1(a)).

Tumor cell damage and death induced by IR700 phototoxicity
We investigated the changes in cell shape induced by IR700 phototoxicity activated by the red laser. IR700 was first reacted with goat anti-rabbit IgG as the secondary antibody, as used in immunocytochemistry. Then, the IR700-anti-rabbit complex was bound to the rabbit anti-CD133 antibody as the primary antibody (IR700-CD133). Using this method, the primary antibody could bind the target cell without changing the IR700-anti-rabbit complex. U87MG and BT142 cells were loaded with 40 nM of IR700-CD133 and incubated for 1 hour at 37°C. Adhesive U87MG cells bound to the glass and extended lamellipodia and filopodia ( Figure 2 Table 1. The ratio increased from 10 to 30% in U87MG and from 61 to 85% in BT142 at 30 and 60 m, respectively, after the photoactivation. These results suggest that BT142 and U87MG are Annexin-V-positive and negative, respectively, within 60 m. To evaluate the mode of necrotic cell death, the nucleuses of damaged cells were stained by ethidium homodimer-1 (EthD-1). EthD-1 permeates into the cell and the nucleus when the permeability of the cell membrane is increased by cell damage. The fluorescence intensity of the cytoplasm gradually increased, and staining in the nucleus was observed at 20 m after photoactivation (Figures 3(c) and (d)). The relative fluorescence intensity of EthD-1 permeabilized in U87MG and BT142 cells was measured in the nucleus, and this intensity depended on the amount (10 and 40 nM) of IR700-CD133 conjugate and the photoactivation time (10 and 30 s) (Figure 3(e)). Loading of 10 nM IR700 resulted in a limited increase in fluorescence intensity after photoactivation, indicating that 10 nM IR700 was not sufficient to enhance cell permeability. The ratio of cells stained by EthD-1 to total cells with 40 nM of IR700-CD133 and photoactivation for 30 s was also measured (Supporting Table 1). The ratio increased from 78 to 89% in U87MG and from 22 to 56% in BT142 at 10 and 20 m, respectively, after the photoactivation, indicating that both cells are EthD-1 positive.
We observed the morphology of nucleus stained by EthD-1 and cell shape at 2 hours after photoactivation of IR700 to confirm the modes of cell death. The

Analysis of the fluctuation of vesicle movements in the process of cell damage
The motility of vesicles was affected by photoactivation of IR700. The motility gradually decreased in U87MG cells, but not in BT142 cells, following photoactivation of IR700. The density of vesicles near the nucleus was too high to detect the position of individual vesicles. However, the change in intensity in image pixels was detectable even at a high density of vesicles. Therefore, the fluctuation of the intensity in pixels on cell images was calculated using newly developed software; these fluctuation values are presented as heat maps ( Figure   4). A highly fluctuating area in U87MG cells was distributed close to the nucleus prior to photoactivation (Figure 4(a)). The area of fluctuation was also distributed near the periphery of the cells, due to the active movements of lamellipodia and filopodia. The centroid of cells barely changed throughout the observation period; thus, the area of fluctuation near the cell nucleus predominantly displayed vesicle movement without the movement of the whole cell ( Supplemental Movies 1-4).
The area of fluctuation in U87MG cells greatly decreased with the decrease in vesicle movement 10 m after photoactivation (Figure 4(b)). In addition, ruffling of the pseudopodium almost stopped, and thinner pseudopodia often shrunk. The area of high fluctuation in BT142 cells was limited to the area around the nucleus and was much smaller than that in U87MG cells (Figure 4(c)); the majority of the cellular space was occupied by the nucleus, with less space for the vesicles to move. The area of fluctuation in BT142 cells gradually increased after photoactivation.
The distribution of intensity fluctuation (I/I) was quantitatively evaluated in the region of interest. The regions (13 x13 and 6.24 x6.24 m for U87MG and BT142 cells, respectively) near the nucleus were selected for the calculation, as most vesicles were distributed there (Figures 4(a) and (c)). The total numbers of

Colocalization of acidic organelles and vesicles containing IR700
IR700-CD133 was endocytosed into tumor cells and was located near the nucleus (Figures 2(b) and (e)). In general endocytosis, materials outside of the cell are taken into the endosomes, which mature to lysosomes during transport to the nucleus [20]. Thus, endosomes containing IR700-CD133 should mature into lysosomes within approximately 1 hour after IR700-CD133 is loaded into the cells.
We investigated the localization of lysosomes and vesicles containing IR700 by LyosTracker staining, as the fluorescence intensity increases in acidic lysosomes.
IR700 was endocytosed into vesicles and transported to a region near the nucleus (Figures 6(a) and (d)). LysoTracker was detected near the nucleus, as well as in the cell periphery (Figures 6(b) and (e)). IR700 fluorescence (shown by the red color in Figure 6) near the nucleus overlapped with the green fluorescence of LysoTracker (Figures 6(c) and (f)). This finding suggests that most of the vesicles containing IR700 were colocalized with lysosomes.

pH changes in damaged cells
To evaluate the process of cell damage, the acidic organelles were stained with a pH indicator, and their localization and intensity of staining were evaluated. The fluorescence intensity of the pH indicator was high in organelles distributed near the nucleus and low in the cytoplasm, indicating a lower pH in late endosomes and lysosomes (Figures 7(a) and (c)). The fluorescence intensity of acidic organelles and the cytoplasm gradually decreased after photoactivation of 40 nM IR700 (Figures 7(b) and (d), Supplemental Movies 5-8).
The changes in fluorescence intensity after photoactivation were investigated by calculating the mean intensity in the area of 30 x 30 pixels (U87MG) and 10 x 10 pixels (BT142) near the nuclei for 60 s. The graph shows the fluorescence intensity in photodamaged cells relative to that in cells not loaded with IR700-CD133 (Figure 7(e) and Supporting Figure 4). The relative fluorescence intensity in U87MG cells slightly increased for approximately 10 s and then decreased gradually over time (Figure 7(e)), while the intensity in BT142 cells decreased almost linearly and was higher than that in U87MG cells at >20 s.
These results indicate that with the exception of the early stage in U87MG cells, photodamage increased the pH of cells and that this effect was presumably induced by a defect of the lysosomes.

Discussion
The selective removal of tumor cells has long been anticipated in the medical field. Indeed, IR700 bound to antibodies has been developed for the selective removal of tumor cells by photodamage [16,17]. Here, we determined the type of cell death induced by IR700 phototoxicity and then measured the changes in intensity fluctuation and pH during cell damage to understand the process driving cell death. The intensity fluctuation and pH increased gradually over time after photodamage; however, BT142 cells died by apoptosis, while U87MG cells died by necrosis.
The types of cell death occurring in U87MG and BT142 cells were determined by EthD-1 and Annexin-V-Cy5 staining, and morphological changes. U87MG cells displayed EthD-1 staining, but not by Annexin-V staining, after photoactivation of IR700. The fragmentation of the nucleus detected by EthD-1 was not observed. Moreover, U87MG did not form bleb structures, and vesicles were diffused out of cells at 2 hours after photoactivation. These results indicate that the mechanism of death in U87MG cells was necrosis [21]. BT142 cells displayed EthD-1-positive and Annexin-V-positive staining, and formed bleb formation within 60 m after photoactivation. BT142 seemed to have the characteristics of apoptosis and necrosis within 60 m [21,22]. It is consistent with the reported result that photodamage of A431-cells by IR700 induced both apoptosis and necrosis [23]. At 2 hours after photoactivation, vesicles in BT142  (Figures 6(g) and (h)). The process of acidic organelle damage was evaluated by real-time observation of pH indicator staining (Figure 7). The fluorescence intensity of the pH indicator in U87MG cells increased and then gradually decreased with photoactivation, while that in BT142 cells decreased (Figure 7(e)). The pH in U87MG cells was presumably decreased by proton leakage from acidic organelles such as lysosomes and late endosomes, and then the pH was increased by protons and proteases leaking from lysosomes. The number of rupturing acidic organelles was not high; thus, photoactivation induced an increase in the permeability of acidic organelle membranes [24]. The decrease in fluorescence of BT142 cells was slower than that of U87MG cells, indicating that BT142 cells have a higher resistance to photodamage than U87MG cells.
Cancer stem cells, such as BT142 cells, show the stem cell-like properties of anaplasticity and multi-differentiation capacity [5][6][7][8][9]26]. The anaplasticity of stem cells is maintained by reducing the level of ROS [27], as the concentration of ROS-removing enzymes, such as glutathione, is higher in cancer stem cells than normal cancer cells. Thus, BT142 cells likely reduced the ROS levels induced by IR700 photoactivation, and lysosomal damage was reduced compared with U87MG cells. This finding is consistent with the observation that a decrease in fluorescence intensity of the pH indicator in BT142 cells was slower than that in U87MG cells (Figure 7(e)). Thus, a reduction in damage would lead to a higher survival rate of BT142 cells in tumors.

Conclusion
The processes of glioma (U87MG) and glioma stem cell (BT142) damage were evaluated using a novel method and a pH indicator. A near-infrared fluorescence dye, IR700, was applied to induce cell damage, and the changes in vesicle movement inside the cells induced by photoactivation were measured according to the intensity fluctuation observed in phase-contrast images. The movements or fluctuation in U87MG cells were decreased after photoactivation, while those in BT142 cells were increased. Our new method to evaluate cell damage by intensity fluctuation is easy to use and sensitive enough to detect damage without photobleaching, which occurs with fluorescence dyes. In addition, the pH was changed as a result of damage to acidic organelles such as lysosomes. We found that the pH change in BT142 cells was slower than that in U87MG cells, which indicates that the damage process of BT142 cells is different from that of U87MG cells and that BT142 cells are more resistant to photodamage than U87MG cells.
These fluctuation and pH methods are valuable for cell screening in combination with other therapeutic treatments.