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Kinase-associated gene mutation pattern and clinical relevance in 205 patients with core binding factor leukemias

Kinase-associated gene mutation pattern and clinical relevance in 205 patients with core binding factor leukemias

MLL-ENL and MLL-AF17, were detected via multiplex RT-PCR strategy. Briefly, all samples were screened with two parallel multiplex RT-PCR reactions. If there were positive PCR fragments in the samples, split-out PCR was performed to determine the fusion gene type. The fusion genes, such as AML1(CBFα)-ETO and CBFβ-MYH11, were determined by RT-PCR technique.
Kaplan-Meier and hazard ratio analyses were used to calculate and compare the OS and disease-free survival (DFS), respectively. Cox model was used for the multivariate analysis of associations of survival and potential prognostic factors.
The characteristics of the 205 patients with CBF AML, including 180 CBFα and 25 CBFβ, are summarized in Table 1. The incidence of CBFβ leukemia was significantly lower than CBFα leukemia, which was not concurrent with the western population, which might be contributed by the difference of genetic backgrounds between Chinese and Caucasian populations. In the 205 patients, 82 (40%) patients carried at least one mutation. C-KIT (55/205, 26.8%), and N-RAS (18/205, 8.8%) and CEBPA (10/205, 8.8%) mutations were identified as the most common additional gene mutations, whereas another kinase-associated gene, FLT3 mutations were very few (2/205, 1.0%). When we combined C-KIT, N-RAS and FLT3 mutation together as a group of class I mutation, 67 (32.7%) patients contained such events. Other mutations could also be identified in relative low incidence (Supplementary Table  1). Interestingly, in CBF leukemia, mutual coexistence could be observed among the class I mutation (Figure 1a). Seven patients carried C-KIT and N-RAS and one patient carried C-KIT and FLT3 mutations together. We identified a similar incidence of C-KIT (30.2% and 13.6% in CBFα and CBFβ, respectively) and N-RAS (8.4% and 19.0% in CBFα and CBFβ, respectively), in contrast, FLT3 was very few identified in our group, which is different with the western reports (around 10%) but similar with the Asian series (1%) (Supplementary Table 2). This distribution of gene mutations is totally converse to acute promyelocytic leukemia, which have higher incidence of FLT3, whereas C-KIT are few identified. 9 As far as the possible association with clinic features, there was no significant difference regarding the age, gender and median   Table 4). Hence, no further multivariate analysis was performed.
The OS of CBFβ leukemia was significantly higher than CBFα leukemia (median OS: 40.0 vs 18.0 ± 1.1 months, P = 0.030, median DFS: 21.0 ± 5.5 vs 18.0 ± 4.0 months, P = 0.438, Supplementary  Figures 1A and 1B).  Letter to the Editor In multivariate analysis of OS and DFS involving clinical parameters and class I mutation in 180 CBFα leukemia patients, class I mutation remained independent prognostic factor for OS (P = 0.041), whereas no factor was the independent one for DFS (Supplementary Table 5).
CBF AML is a unique subtype of leukemia, whose diagnosis is so strongly upon detection of clonal genetic abnormalities of t(8;21) (q22;q22) and inv(16)(p13q22)/t(16;16), or their related gene fusion of AML1-ETO and CBF-MYH11, whereas the proportion of bone marrow blasts. 10 It was reported that the incidence of CBFα and CBFβ AML was around 7% and 5-8%, respectively. Although lack of strong epidemiology data, our previous experience 11 and this work proved that, in Chinese population, a slight more CBFα leukemia patients are presented, whereas CBFβ AML are very few. In this study, a similar incidence of C-KIT (30.2% and 13.6% in CBFα and CBFβ, respectively) and N-RAS (8.4% and 19.0% in CBFα and CBFβ, respectively) was identified; whereas FLT3 was very few in our group, similar with the Asian reports.
CBF AML is considered to have favorable prognosis when received standard DNR (daunorubicin), A (Ara-c(cytarabine)) induction and high-dose Ara-C-based consolidation. However, in Chinese population, as presented in this study and previous reports, the treatment outcome was not as good as the western reports, given the similar treatment, especially for CBFα AML. Huang et al. 12 even use allogenetic stem cell transplantation as the front-line treatment for t(8;21) AML patient, regarding the mutational status of C-KIT and minimal residual disease during the treatment. Our data proved that CBFβ AML have a better survival as compared with CBFα AML. In CBFα AML, kinase-associated mutation, when combined together, exerted a strong negative effect on survival (hazard ratio = 1.617 (95% confidence interval: 1.048-2.495), P = 0.030 and hazard ratio = 1.759 (95% confidence interval: 1.005-3.079), P = 0.048 for OS and DFS, respectively), which was further proved by multivariate analysis.
In conclusion, CBF AML is a heterogeneous disease, whose clinical behavior and treatment outcome is strongly dependent on additional gene mutations, especially for class I mutations. 13 Further improvement of the prognosis of the disease should corporate TKI in the standard treatment algorithm, and several groups reported a promising result. 14 This strategy may especially benefit Chinese CBF leukemia patients, new clinical trial integrating homoharritonin, 15 which is proved to improve the survival of AML in Chinese population, and TKI are ongoing (ChiCTR-IPR-15006862).