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Nuclear envelope impairment is facilitated by the herpes simplex virus 1 Us3 kinase

Background: Capsids of herpes simplex virus 1 (HSV-1) are assembled in the nucleus, translocated either to the perinuclear space by budding at the inner nuclear membrane acquiring tegument and envelope, or released to the cytosol in a “naked” state via impaired nuclear pores that finally results in impairment of the nuclear envelope. The Us3 gene encodes a protein acting as a kinase, which is responsible for phosphorylation of numerous viral and cellular substrates. The Us3 kinase plays a crucial role in nucleus to cytoplasm capsid translocation. We thus investigate the nuclear surface in order to evaluate the significance of Us3 in maintenance of the nuclear envelope during HSV-1 infection. Methods: To address alterations of the nuclear envelope and capsid nucleus to cytoplasm translocation related to the function of the Us3 kinase we investigated cells infected with wild type HSV-1 or the Us3 deletion mutant R7041(∆Us3) by transmission electron microscopy, focused ion-beam electron scanning microscopy, cryo-field emission scanning electron microscopy, confocal super resolution light microscopy, and polyacrylamide gel electrophoresis. Results: Confocal super resolution microscopy and cryo-field emission scanning electron microscopy revealed decrement in pore numbers in infected cells. Number and degree of pore impairment was significantly reduced after infection with R7041(∆Us3) compared to infection with wild type HSV-1. The nuclear surface was significantly enlarged in cells infected with any of the viruses. Morphometric analysis revealed that additional nuclear membranes were produced forming multiple folds and caveolae, in which virions accumulated as documented by three-dimensional reconstruction after ion-beam scanning electron microscopy. Finally, significantly more R7041(∆Us3) capsids were retained in the nucleus than wild-type capsids whereas the number of R7041(∆Us3) capsids in the cytosol was significantly lower. Conclusions: The data indicate that Us3 kinase is involved in facilitation of nuclear pore impairment and, concomitantly, in capsid release through impaired nuclear envelope.


Introduction
Capsids of herpes simplex virus 1 (HSV-1) assemble in replication centers (RCs) in host cell nuclei (Quinlan et al., 1984). From there, they are transported to the nuclear periphery and are translocated to the cytoplasm via two diverse routes (Roizman et al., 2014). In one route, the nucleocytoplasmic barrier is overcome by budding of capsids at the inner nuclear membrane (INM). During budding, tegument and viral envelope are acquired (Granzow et al., 2001;Leuzinger et al., 2005). The result is a fully enveloped virion located in the perinuclear space (PNS) delineated by the INM and outer nuclear membrane (ONM) that are part of the endoplasmic reticulum (ER). Virions in the PNS have been proposed for 5 decades to de-envelope by fusion of the viral envelope with the ONM releasing capsid and tegument into the cytoplasmic matrix (Skepper et al., 2001;Stackpole, 1969) for secondary envelopment at the trans Golgi network (TGN). Envelopment at the INM, de-envelopment at the ONM and re-envelopment at the TGN have been proposed to be essential for production of infectious progeny virus e.g. (Mettenleiter et al., 2006). The cruxes of the de-envelopment theory are i) that the viral envelope of Us3 deletion mutants cannot fuse with the ONM (Wisner et al., 2009), and hence, their capsids cannot be released into the cytoplasmic matrix. Consequently, they cannot be re-enveloped. Instead, virions of Us3 deletion mutants accumulate in the PNS. Despite of the inability of de-and reenvelopment Us3 deletion mutants are fully infective (Reynolds et al., 2002;Wild et al., 2015;Wisner et al., 2009). ii) The process taking place at the ONM exhibits all characteristics of budding shown for the first time 50 years ago (Darlington & Moss, 1968). The process at the ONM also takes place in the absence of the fusion glycoproteins gB and gH leading to accumulation of virions in the PNS-ER compartment (Farnsworth et al., 2007). Therefore, the virus-membrane interaction taking place at the ONM is budding, indeed, not fusion as discussed in detail (Wild et al., 2018). Virions are transported out of the PNS into adjacent ER cisternae (Gilbert et al., 1994;Granzow et al., 1997;Maric et al., 2011;Radsak et al., 1996;Schwartz & Roizman, 1969;Stannard et al., 1996;Sutter et al., 2012;Whealy et al., 1991;Wild et al., 2002). ER membranes connect to Golgi membranes forming a PNS-ER-Golgi continuum that is considered very likely to function as a direct intraluminal transportation route for virions from the PNS into Golgi cisternae (Wild et al., 2018). Therefore, the question remains how naked capsids gain access to the cytoplasmic matrix if the viral envelope does not fuse with the ONM, and, consequently, de-envelopment does not take place. In cells infected with the monkey herpes pathogen simian agent 8 (Borchers & Ozel, 1993), capsids gained access to the cytoplasmic matrix via impaired nuclear envelope (NE). It was clearly shown that the ONM turned into the INM at the sites of NE breakdown indicating that the NE breakdown was rather a result of nuclear pore impairment than a rupture of nuclear membranes. In bovine herpes virus 1 (BoHV-1) infected MDBK cells (Wild et al., 2005) and in HSV-1 infected Vero cells (Leuzinger et al., 2005;Wild et al., 2009), impaired nuclear pores measured from about 150 nm to 300 nm. Large areas of impaired nuclear surface measuring several micrometers clearly exhibited intact transformation of the INM into the ONM indicating that NE impairment started by nuclear pore impairment. Impaired NE was also shown in cells infected with pseudorabies virus (PrV) UL31 and UL34-null recombinants (Grimm et al., 2012;Klupp et al., 2011;Schulz et al., 2015) as well as after HSV-1 infection of embryonic mouse fibroblasts (Maric et al., 2014). Capsids of HSV-1 and BoHV-1 were present in the nuclear matrix, which protruded through impaired nuclear pores into the cytoplasmic matrix, indicating that capsids are released via impaired NE. Capsids were also shown -though unrecognizedin impaired nuclear pores in HSV-1 infected mouse fibroblasts (Maric et al., 2014).
Us3 is a multifunctional protein that plays various roles in the viral life cycle by phosphorylating more than 20 viral and cellular substrates (Kato & Kawaguchi, 2018). Phosphorylation of gB by Us3 was reported to be crucial for proper regulation of gB intracellular transport and in viral replication (Imai et al., 2011;Imai et al., 2010). Us3 is involved in blocking apoptosis induced by HSV-1 (Benetti et al., 2003;Deruelle et al., 2010;Jerome et al., 1999;Leopardi et al., 1997;Munger & Roizman, 2001;Ogg et al., 2004), bovine herpes virus 1 (Brzozowska et al., 2018) and PrV (Deruelle et al., 2010). Us3 kinase is supposed to play a crucial role in capsid nucleus to cytoplasm translocation in association with phosphorylation of viral proteins including glycoprotein B (Kato et al., 2009;Wisner et al., 2009), UL31 (Mou et al., 2009) and UL34 (Ryckman & Roller, 2004). The 3 proteins facilitate translocation of virions out of the PNS (Poon et al., 2006;Reynolds et al., 2004;Reynolds et al., 2001;Reynolds et al., 2002;Wisner et al., 2009). In contrast, inhibited nucleus to cytoplasm translocation was suggested to be independent of phosphorylation of UL34 by Us3 in PrV infected cells (Klupp et al., 2001). UL31 and UL34 also promote the late maturation of viral replication compartments at the periphery (Simpson-Holley et al., 2004), and are involved in nuclear expansion during HSV-1 infection (Simpson-Holley et al., 2005). Us3 kinase also phosphorylates the nuclear lamin A/C (Mou et al., 2007) and is involved in disrupting the nuclear lamina together with UL34 (Bjerke & Roller, 2006) possibly in association with phosphorylation of emerin (Leach et al., 2007). Recently, it was shown that UL31 and UL34 are responsible for budding of capsids at the INM (Bigalke & Heldwein, 2015;Bigalke & Heldwein, 2016;Hagen et al., 2015) and that the endosomal sorting complex required for transport-III (ESCRT III) is responsible for scission of the viral envelope from the INM (Arii et al., 2018). Us3 kinase down-regulates phospholipid biosynthesis (Wild et al., 2012a) induced by HSV-1 (Sutter et al., 2012) to maintain nuclear membrane integrity upon nuclear expansion and budding of capsids. Us3 kinase was suggested to inhibit breakdown of the NE (Maric et al., 2014).
Based on the proposed effects of Us3 kinase on the NE and nucleus to cytoplasm translocation we investigated the nucleus and the nuclear periphery in Vero cells infected with wild type (wt) HSV-1, the Us3 deletion mutant R7041(∆Us3) (Purves et al., 1987;Purves et al., 1991) and its repair mutant R2641 by cryo-field emission scanning electron microscopy (cryo-FESEM) of cells after freezing and freeze-fracturing, by transmission electron microscopy (TEM) prepared by high pressure-freezing followed by freeze-substitution, and by super resolution light microscopy using the stimulated emission depletion (STED) principle. The cryo-techniques enable visualization of structures in great detail, and, even more important, in a state that is closest to the situation in living cells (Harreveld & Fifkova, 1975). The data suggest that Us3 kinase is involved in facilitation of nuclear pore impairment as well as in intranuclear capsid transportation and capsid release via impaired nuclear pores.

Cells and viruses
Vero cells (European Collection of Cell Cultures, ECACC, 84113001) were grown in Dulbecco's modified minimal essential medium (DMEM, 31885-023; Gibco, Bethesda, MD, USA) supplemented with penicillin (100 U/ml), streptomycin (100 μg/ml) (Anti-Anti, 15240-062, Gibco) and 10% fetal bovine serum (FBS; 2-01F10-I, Bio Concept, Allschwil, Switzerland). Wild-type (wt) strain F (Ejercito et al., 1968), the Us3 deletion mutant R7041(∆Us3) and the repair mutant R2641 (kindly provided by B. Roizman, The Marjorie B. Kovler Viral Oncology Laboratories, University of Chicago, Illinois, USA). Wt HSV-1 were propagated in Vero cells. Virus yields were determined by plaque titration. For infection, cells were washed with DMEM without FBS, inoculated with virus diluted in DMEM without FBS, and kept for 1 h at 37°C. Then, cells were quickly washed with PBS, and incubated at 37°C in the presence of DMEM supplemented with 2%FBS. For controls, cells were mock infected by the same procedure replacing virus suspension with DMEM without FBS.
For 3D reconstruction, a trimmed epon block was mounted on a regular SEM stub using conductive carbon and coated with 10 nm of carbon by electron beam evaporation to render the sample conductive. Ion milling and image acquisition was performed simultaneously in an Auriga 40 Crossbeam system (Zeiss, Oberkochen, Germany) using the FIBICS Nanopatterning engine (NPVE v4.6,Fibics Inc.,Ottawa,Canada). A large trench was milled at a current of 16 nA and 30 kV, followed by fine milling at 240 pA and 30 kV during image acquisition with an advance of 5 nm per image. Prior to starting the fine milling and imaging, a protective Platinum layer of approximately 300 nm was applied on top of the surface of the area of interest using the single gas injection system at the FIB-SEM. Images were acquired at 1.9 kV (30 μm aperture) using an in-lens energy selective backscattered electron detector (ESB) with a grid voltage of 500 V, and a dwell time of 1 μs and a line averaging of 50 lines. The pixel size was set to 5 nm and tilt-corrected to obtain isotropic voxels. The final image stack was registered and cropped to the area of interest for segmentation using the TrakEM2 plug-in (version 1.0i) for Fiji image-processing package v1.51f.
Cryo-field emission scanning electron microscopy (Cryo-FESEM) Vero cells were grown in 25 cm 2 cell culture flasks for 2 days prior to inoculation with R7041(∆Us3), wt HSV-1 or R2641 at MOI of 5. Cells were harvested at 16 hpi by trypsinization followed by centrifugation at 150 × g for 8 min. The pellet was resuspended in 1 ml fresh medium, collected in Eppendorf tubes and fixed by adding 0.25% glutaraldehyde to the medium. The suspension was kept in the tubes at 4°C until cells were sedimented. After removal of the supernatant cells were frozen in a highpressure freezing machine EM HPM100 (Leica Microsystems, Vienna, Austria) as described in detail previously (Wild et al., 2012b;Wild et al., 2009). Cells were fractured at -120°C in a freeze-fracturing device BAF 060 (Leica Microsystems) in a vacuum of 10 -7 mbar. The fractured surfaces were partially freeze-dried ("etched") at -105°C for 2 min, and coated with 2.5 nm platinum/carbon by electron beam evaporation at an angle of 45°. Some specimens were coated additionally with 4 nm of carbon to reduce electron beam damage during imaging at high magnifications. Specimens were imaged in an Auriga 40 Cross Beam system equipped with a cryo-stage (Zeiss, Oberkochen, Germany) at -115°C and an acceleration voltage of 5 kV using the inlens secondary electron detector.
For super-resolution imaging, DAPI staining was avoided, Alexa 532-conjugated antibodies (goat anti mouse, 1:500) were used as secondary antibodies for Mab414, and Alexa 488 as secondary antibodies for VP16. Cells were mounted with ProLong Gold Antifade Reagent (P36930 Thermo Fisher). Images were acquired with a TCS SP8 gSTED 3X microscope (Leica Microsystems, Wetzlar, Germany), which allows, in addition to standard confocal microscopy, the use of the gated STED (gSTED) principle to perform imaging beyond the diffraction limit. An HC PL Apo STED White 100x/1.4NA oil objective was used to obtain super resolved images with a final pixel size of 20 nm. The nuclear pores were excited using a super continuum white light laser (WLL) at a wavelength of 532 nm, depleted with a STED laser beam at 660 nm and detected with hybrid detectors adapted for time gated imaging (applied time gate: 1.5 -7 ns). For analysis, the images were deconvolved employing the deconvolution algorithm of the program suite Huygens Professional version 18.04 (SVI, Hilversum, The Netherlands).

Morphometric analysis
Nuclei of Vero cells are triaxial ellipsoids. Therefore, the mean nuclear volume (V n ) and mean nuclear surface area (S n ) were calculated on the basis of the half axes (a, b, c) measured on 25 deconvolved confocal images of DAPI stained nuclei as described in detail recently (Sutter et al., 2012). Capsids within nuclei were counted on TEM images selected at random at 16 hpi). Then the nuclear area was estimated by point counting applying a multipurpose test system (Weibel, 1979). The mean nuclear area (A n ) was calculated using the equation A n = P n ·d 2 , whereby P n are points hitting the nuclei and d the test line length. Capsids were counted on nuclear profiles. From the number of capsids (c) and the nuclear area, the numerical density N Vc = c/(A n )/D can be calculated, whereby D is the mean particle diameter: D =125 nm for capsids (Zhou et al., 1998). Then, the total number of capsids (N c ) per mean nuclear volume can be calculated: N c = N Vc ·V n . The mean number of RCs was expressed per nuclear profile because the true size of RCs cannot be measured accurately. Diameters of nuclear pores visualized by cryo-FESEM imaging were measured using the AnalySIS (version 5) Five software (Olympus, Hamburg, Germany). The number of nuclear pores were counted and expressed per 1 μm 2 nuclear area and calculated per the mean nuclear surface obtained from confocal images. The number of nuclear pore complexes (NPC) was determined on Mab414 stained nuclei using AnalySIS Five (Olympus).
To determine changes in nuclear membranes arising during R7041(∆Us3) infection, and the amount of membranes used for envelopment during budding, images were collected at a final magnification of 87500x. On these images the surface density of membrane folds (Sv f ) and of the viral envelope in the PNS (Sv e ) were estimated using the equations Sv f,,e = 4I f,e /d·P n , whereby I f,e are the number of intersections of the test lines d with membrane folds and viral envelope, respectively. From the surface density, the area of membrane folds and viral envelope were calculated per mean nuclear volume: S f = Sv f ·V n and S e = Sv e ·V n . Mean and variance of nuclear pore diameters were compared by the Welch-Test, Mean and standard deviation of all data by a multiple t-test using GraphPad Prism version 8.

HSV-1 induced nuclear pore impairment is reduced in the absence of Us3
To visualize the nuclear surface in the frozen hydrated state, frozen cells need to be fractured. Fracturing of frozen hydrated cells does not create completely arbitrary surfaces. Rather, fracture planes run preferentially along the hydrophobic center of the lipid bilayer of cell membranes, e.g. along the center of the INM or ONM (Severs, 2007). In cryo-FESEM images, intact nuclear pores appear basically as flat button-like structures at the INM, and as small indentations at the ONM (Figure 1) as described in detail (Wild et al., 2012b) and by many other authors from the early days of introducing the freeze-fracture technique, e.g. Overview showing in addition to nuclear pores with anchored NPC, pores of which the NPC has been removed (d) as well as pores with protruding NPC (p). Bars 500 nm. (Haggis, 1989;Nicolini et al., 1984;Teigler & Baerwald, 1972). Nuclear pore diameter measures 125 nm in negatively stained frog oocytes (Pante & Aebi, 1996). The diameter of nuclear pores in mock infected Vero cells imaged by cryo-FESEM varies due to changes taking place during preparation and imaging. The NPC can be removed together with the ONM during cryofracturing leading to small depressions at the INM. Alternatively, the NPC may slightly protrude into the cytoplasm (Wild et al., 2012b). The average diameter of these small protrusions was 120 nm. Distribution of nuclear pores was irregular ( Figure 1C). In wt HSV-1 infected cells, large areas of the nuclear surface were devoid of nuclear pores and of nuclear membrane proteins (Orci & Perrelet, 1975). This was also shown in herpes virus infected BHK-21 cells employing the freeze-fracture technique (Haines & Baerwald, 1976). Most of the nuclear pores appeared similar as in mock infected cells ( Figure 2). However, there were large clearly confined holes. Many of the holes contained material protruding into the cytoplasm. TEM analysis revealed that most of these holes were confined by an intact INM turning into the ONM ( Figure 3A and B), and that nuclear material containing capsids protruded through the holes into the cytoplasm. In a sole case, the nuclear membranes were obviously disrupted ( Figure 3C). We thus conclude that the clearly confined holes are dilated nuclear pores.
In cells infected with the deletion mutant R7041(∆Us3), the most striking feature was the irregular nuclear surface showing folds and invaginations (Figure 4). Nuclear pores appeared similar as in mock-infected cells. The number of dilated pores was low. To address frequency and size of pore dilation, we measured nuclear pores on 10 nuclei harvested at 16 h post inoculation (hpi). In mock infected cells, pore diameter ranged between 90 and 140 nm with a few exceptions ( Figure 5A). In cells infected with R7041(∆Us3), nuclear pores measured up to 180 nm, and in wt HSV-1 or the Us3 repair mutant R2641 up to 400 nm. The mean pore diameter was significantly larger (p<0.0001) in wt HSV-1 and R2641 infected cells compared to mock or R7041(∆Us3) infected cells whereas it did not differ significantly between R7041(∆Us3) and mock infection. The variance of pore diameter was significantly different (p<0.0001) between all groups except between wt HSV-1 and R2641 infected cells. NPCs disintegrate and, subsequently, nuclear pores dilate in the course of NE breakdown during mitosis (Georgatos et al., 1997;Terasaki et al., 2001). HSV-1 arrests the cell cycle in the G1/S phase and S phase (de Bruyn Kops & Knipe, 1988;Ehmann et al., 2000). Mitotic activity almost completely declines by 6 hpi with wt HSV-1 at a MOI of 5 (Sutter et al., 2012). Therefore, pore dilation in HSV-1 infected cells is likely not related to mitosis. In measuring pore diameter, we only considered nuclei with clear indications of infection such as budding capsids. We thus conclude that i) nuclear pores dilate during HSV-1 infection, and ii) dilation of nuclear pores is facilitated by the Us3 kinase.

Nuclear membranes expand during R7041(∆Us3) infection
The nuclear membranes expand during infection with HSV-1. Expansion of nuclear membranes is out of control in cells infected with Us3 deletion mutants leading to formation of folds and invagination that contain virions (Reynolds et al., 2002;Wild et al., 2012a;Wild et al., 2015;Wisner et al., 2009). We calculated the excessively produced membranes by morphometric analysis. The membrane folds cover an area equaling about 30% of the total nuclear surface area ( Figure 5C) at16 hpi with R7041(∆Us3). R7041(∆Us3) virions accumulate in the PNS. The total surface area of membranes needed for envelopment was about 100 μm 2 which equals about 20% of the nuclear surface. Nuclear membrane folds form complicated structures. Therefore, we imaged an area of folds of the INM on serial sections employing the FIB-SEM technology. 3D reconstruction revealed that the INM folds to complicated structures enclosing cavities that contain virions ( Figure 6). We conclude that excessive production of membrane may counteract the dilation of nuclear pores.

Number of nuclear pores declines during wt HSV-1 and R7041(∆Us3) infection
The number of nuclear pores was counted on cryo-FESEM images of 10 nuclei harvested at 16 hpi. Then, the mean number of nuclear pores was expressed per mean nuclear surface area ( Figure 5B) calculated from the three axes measured on confocal images. The total pore number was significantly lower (p<0.001) in cells infected with any virus compared to mock-infected cells ( Figure 5C). This was probably due to areas devoid of nuclear pores after infection (Figure 2 and Figure 8). Confocal microscopy of Mab414 stained nucleoporins revealed also statistically significant lower numbers of (p<0.001) NPCs after infection with R7041(∆Us3), wt HSV-1 or R2641 compared to the pore number in mock infected cells ( Figure 5C). To ascertain whether resolution power of confocal microscopy was sufficient for accurate determination of pore numbers (Wild et al., 2009), we visualized nuclear pore distribution by gSTED (Figure 7). Quantitation of nuclear pores on 3 nuclei per group revealed that the mean total number of nuclear pores per mean nuclear surface was almost equal after R7041(∆Us3) infection, 12% lower after wt HSV-1 infection but 5% higher in mock infected cells ( Figure 5C). We assume that pore numbers were overestimated to some extent in SEM images. However, determination of pore numbers in confocal images and STED images is considered very likely to result in some underestimation. Minimal interpore distance was less than 30 nm after wt HSV-1 infection, and less than 7 nm in mock infected cells (Wild et al., 2009). Lateral resolution of STED is 50 nm. Nuclei and, consequently, the nuclear surface area expand during HSV-1 infection (Simpson-Holley et al., 2005;Sutter et al., 2012). Phospholipid biosynthesis is induced by HSV-1 contributing to nuclear membrane enlargement (Sutter et al., 2012). From the nuclear surface devoid of pores and nuclear membrane proteins we conclude that nuclear membranes enlarge upon HSV-1 infection, but pore formation is delayed or inhibited, and insertion of host cell

Capsids bud at the inner and outer nuclear membranes
Capsids overcome the nucleocytoplasmic barrier by budding at the INM acquiring tegument and envelope. The result is a fully enveloped virion in the PNS (Figure 8 and Figure 10). In cryo-FESEM images, budding capsids appear as spheres covered with bright dots (probably representing spikes) at the INM or in the PNS. They look like bulges when they are covered by the ONM, as clearly apparent when the ONM is partially removed. During budding, the capsid pushes the INM into the PNS whilst at the periphery the INM is pulled behind the budding capsid  . The same is displayed at higher magnification in panel D. Nuclear pores (green), imaged by STED, are labeled with Mab414 and Alexa 532 as secondary antibody. The viral protein VP16 (red) was labeled with a polyclonal antibody and Alexa 488 as secondary antibody. In the mock infected cells (C) a region devoid of pores, due to the uneven surface of a nucleus, can be observed (asterisk). Note the focal distribution of VP16 after R7041(∆Us3) infection. Bar 1µm.
for fission to give rise of a virion with an electron dense envelope located in a deep indentation (Figure 8) readily seen on the INM in cryo-FESEM images. The indentations at the ONM could be interpreted as late stages of fusion of the viral envelope with the ONM after release of capsid and tegument into the cytoplasm (Skepper et al., 2001). However, the process at the ONM takes place even in the absence of fusion proteins gB/gH (Farnsworth et al., 2007) discussed in detail by (Wild et al., 2018). Therefore, this process is budding rather than fusion, and hence, the indentations represent initial stages of budding capsids from the cytoplasm into the PNS. The phenotypes of the virus translocation across the ONM shows all characteristics of budding ( Figure 9) as discussed in detail (Leuzinger et al., 2005;Wild et al., 2005;Wild et al., 2012b). The budding process at the ONM  The ONM forms folds (arrows) that derive by the capsids being pushed towards the perinuclear space (PNS) whilst the ONM is forced to cover the capsids. The space between ONM and capsid is filled with tegument (t) (B) Transmission electron microscopy (TEM) image of budding capsid at the ONM (o). Note the curvature (thick arrow) that is typical for budding, the tegument (t), which starts to be deposited between the budding front and the capsid, and the sharp bending of the ONM, which turns into the viral envelope that contains the budding proteins UL31 and UL34. Bars 100 nm.
was described for the first time in baby hamster kidney cells infected with herpes simplex virus strain H4 (Darlington & Moss, 1968).

Release of R7041(∆Us3) nuclear capsids is reduced
For release into the cytoplasm, capsids need to be transported from the RCs to the nuclear periphery. UL31 and UL34 have been shown to be responsible for intranuclear capsid transportation (Simpson-Holley et al., 2004). Function of UL31 and UL34 depends on phosphorylation by the Us3 kinase (Mou et al., 2009;Ryckman & Roller, 2004). Therefore, we compared the number of RCs and of capsids (Figure 10), including A-capsids (empty capsids), B-capsids (scaffold containing capsids), and C capsids (DNA containing capsids) (Tandon et al., 2015) in 10 randomly selected Vero cells infected with R7041(∆Us3) or wt HSV-1 from 5 independent experiments. In R7041(∆Us3) infected cells, the mean number of RCs per nuclear profile was 0.3 (±0.3) at 9 hpi, and 4.5 (±0.8) at 24 hpi ( Figure 11). In contrast, the number of RCs was lower than 1 per nuclear profile at any time point after inoculation with wt HSV-1 or the repair mutant R2641. The number of intranuclear capsids dispersed throughout the nucleus was significantly higher at any time point after infection with R7041(∆Us3) compared to wt HSV-1 or the repair mutant R2641 (Figure 12A), reaching a maximum of 10,500 (±2250) per mean nuclear volume at 24 hpi with R7041(∆Us3). Interestingly, the number of wt HSV-1 capsids increased up to 3,500 (±800) by 16 hpi, and remained constant thereafter. The higher number of RCs and capsids in R7041(∆Us3) infected cells may be due to enhanced assembly or inhibited release into the cytoplasm. Therefore, we harvested virus particles from cell cultures at 24 hpi for immunoblotting. Western blots probed with monoclonal antibodies against the capsid protein ICP5 did not reveal any obvious differences between R7041(∆Us3) and wt HSV-1 (Figure 13). We thus assume that the higher number of RCs and of capsids is more likely the result of impeded release than of enhanced synthesis and assembly.

Capsid release via impaired nuclear envelope is declined in the absence of Us3
Capsids gain access to the cytoplasmic matrix via impaired NE (Borchers & Ozel, 1993;Grimm et al., 2012;Klupp et al., 2011;Leuzinger et al., 2005;Maric et al., 2014;Schulz et al., 2015;Wild et al., 2005;Wild et al., 2012b) that starts by impairment of nuclear pores. Impairment of nuclear pore is shown in Figure 3. Capsids are not released from the PNS into the cytoplasmic matrix in the absence of Us3 (Reynolds et al., Figure 11. Mean number and standard deviation of replication centres (RCs) containing capsids expressed per nuclear profile. Level of significance: **p<0.001, ***p<0.0001 compared to wt HSV-1, n=5. 2002;Wisner et al., 2009). Nonetheless, quantitative electron microscopic analysis revealed R7041(∆Us3) capsids in the cytoplasm though at a reduced number compared to wt HSV-1 (Wild et al., 2015). As shown in Figure 12B, the number of R7041(∆Us3) capsids including those in the cytoplasmic matrix and in the process of budding at membranes was significantly lower compared to wt HSV-1 capsids at any time after 12 hpi. It was postulated that gB is not phosphorylated in the absence of the Us3 gene, and hence, the viral envelope cannot fuse with the ONM. (Wisner et al., 2009). More important, the viral envelope does not fuse with the ONM at all as discussed above. Therefore, we conclude that capsids gain access to the cytoplasm via impaired nuclear pores, and that R7041(∆Us3) capsid release declines due to reduced nuclear pore impairment.

Discussion
Requirement of nuclear membranes for budding HSV-1 replicates in the nucleus and radically alters nuclear architecture including formation of RCs, nuclear expansion and disruption of the nuclear lamina (Simpson-Holley et al., 2005). The nuclear surface expands from ~400 μm 2 to ~500 μm 2 , so that ~100 μm 2 of membrane area must be inserted into the INM and the same amount into the ONM within the first 9 h of infection (Sutter et al., 2012). The required phospholipids are supplied by de novo biosynthesis. Translocation of capsids from the nucleus into the cytoplasm starts at about 8 hpi. Release of capsids by budding at the INM requires additional membranes. R7041(∆Us3) capsids bud at the INM, the resulting virions, however, cannot be transported out of the PNS (Figure 14). Morphometric analysis revealed that ~2400 virions accumulate in the PNS of a single cell by 24 hpi (Wild et al., 2012a;Wild et al., 2015) that means 98% of all enveloped R7041(∆Us3) virions produced. The diameter of a virion is 200 nm (Grünewald et al., 2003). Therefore, the surface area of 2400 virions equal , the kiss and run mechanism, into Golgi cisternae for packaging into transport vacuoles that delivers virions to the plasma membrane for exocytotic release into the extracellular space. In pathway 2, capsids released via impaired nuclear pores (NP) either bud at Golgi or vacuolar membranes into Golgi cisternae or vacuoles or are wrapped by Golgi membranes or endosomal membranes. Wrapping means budding at membranes concomitantly forming the viral envelope and the vacuolar membrane. The result is a concentric vacuole containing a single virion. (B) In the absence of the Us3 gene, virions cannot be released from the PNS possibly because the intraluminal transportation route is impaired. Nevertheless, Us3 deletion mutants are infective. Nucleus to cytoplasm capsid translocation via impaired nuclear pores is inhibited. Budding into Golgi cisternae and wrapping at Golgi membranes is inhibited. 98% of enveloped virions have been shown to locate in the PNS (Wild et al., 2015). an area of ~300 μm 2 . If the idea of de-envelopment by fusion of the viral envelope with the ONM was correct (Skepper et al., 2001) the same amount of membranes used for budding at the INM would have to be inserted into the ONM. The crux is that close to 2 capsids bud simultaneously per 1 μm 2 nuclear surface at 10 hpi (Wild et al., 2009) demanding high dynamics in maintenance of nuclear membrane integrity. Us3 kinase down regulates phospholipid biosynthesis (Wild et al., 2012a). In the absence of the Us3 gene, the INM forms multiple folds, invaginations and evaginations due to excess biosynthesis of phospholipids. Therefore, we speculate that dilation of nuclear pores is provoked by the high demand of membranes for envelopment of budding wt HSV-1 capsids, and that pore dilation is largely prevented when membranes are over produced in the absence of the Us3 gene.
Recently, it was reported that the endosomal sorting complexes required for transport III (ESCRT-III) is responsible for scission of the viral envelope form the INM (Arii et al., 2018). ESCRT-III also is involved in maintaining INM integrity by downregulating excess INM. Interestingly, the depletion of ESCRT-III proteins induced aberrant INM proliferation in uninfected cells. In HSV-1 infected cells, virions accumulated between nuclear membranes in a similar fashion as Us3 deletion mutants. However, it has to be borne in mind that virions may accumulate in the PNS per se late in infection (Leuzinger et al., 2005). Knockdown of CD98 heavy chain and its binding partner β integrin induced invaginations of the INM that contained HSV-1 virions (Hirohata et al., 2015) resembling the phenotype of infection with Us3 deletion mutants. The question thus arises whether Us3 exerts its regulatory effect on phospholipid biosynthesis via CD98 heavy chain and/or its binding partner β integrin and/or ESCRT-III.

Breakdown of the nuclear envelope
Breakdown of the NE in the course of herpes virus infection was reported in cells infected with Simian agent 8 (Borchers & Ozel, 1993), PrV UL31 and UL34 recombinants (Grimm et al., 2012;Klupp et al., 2011;Schulz et al., 2015) and HSV-1 (Maric et al., 2014). Breakdown of the NE was considered likely to be related to dilation of nuclear pores after infection with bovine herpes virus 1 (Wild et al., 2005) and HSV-1 (Leuzinger et al., 2005). Nuclear pore dilation and nuclear membrane breakdown requires careful examination, preferably on serial sections through cells prepared by rapid freezing followed by freezesubstitution to keep membranes in place (Wild et al., 1997), to prevent loss of lipids (Weibull et al., 1984) and to improve both temporal and spatial resolution (Mueller, 1992). Images taken from such prepared cells clearly demonstrate the difference between pore dilation and membrane breakdown (Figure 3). Interestingly, true membrane rupture was found to be restricted to the INM. Another technique to visualize nuclei in the closest natural state is microscopy of cells in the frozen hydrated state. Cryo-FESEM revealed that the holes in the nuclear surface were clearly demarcated indicating that these holes are not the result of accidental ruptures of the INM and ONM. They are very likely dilated nuclear pores that can enlarge leading to large impaired areas of the nuclear envelope as shown for HSV-1 and BoHV-1 (Leuzinger et al., 2005;Wild et al., 2005). This is in line with the statement that the initial microscopically visible event in breakdown of the nuclear envelope is dilation of nuclear pores in cells undergoing meiosis (Terasaki et al., 2001).

Formation of nuclear pores
It was reported that disassembly of the nuclear lamina is required, and that membrane disruption is driven by microtubules (Georgatos et al., 1997). Disassembly of the lamina is induced by HSV-1 enabling successful budding of capsids at the INM (Scott & O'Hare, 2001;Simpson-Holley et al., 2005). Lamina disassembly depends on Us3 (Bjerke & Roller, 2006;Mou et al., 2007), UL31 andUL34 (Reynolds et al., 2004;Simpson-Holley et al., 2005) suggesting that the Us3 kinase might be involved in NE breakdown. However, lamina disassembly is not established to cause disruption of the NE (Prunuske et al., 2006). Alternatively, breakdown of the NE has been proposed to start by disassembly of NPCs. As a consequence, nuclear pores are destabilized and expand (Terasaki et al., 2001). Therefore, we postulated that nuclear pores dilate leading to disruption when infection proceeds.
Nuclear pores are formed and NPCs are assembled during mitosis as well as in the interphase (Doucet & Hetzer, 2010). Despite nuclear expansion in the interphase, nuclear pore number remains constant (Doucet & Hetzer, 2010). However, the number of nuclear pores was reduced after both wt HSV-1 (Wild et al., 2009) and R7041(∆Us3) infection. The nucleoporin Nup153 was shown to be down regulated in HSV-1 infected cells (Ray & Enquist, 2004) whereas the cellular levels of major nucleoporins remained unchanged (Hofemeister & O'Hare, 2008;Wild et al., 2009). Nuclei expand during HSV-1 infection (Simpson-Holley et al., 2005;Sutter et al., 2012) and during R7041(∆Us3) infection (Wild et al., 2012a). Expanding nuclei require membrane constituents for enlargement of the NE. HSV-1 has been shown to induce biosynthesis of phospholipids which are incorporated into nuclear membranes. The nuclear surface area increases by about 100 μm 2 within 12 hpi with wt HSV-1 (Sutter et al., 2012). The NE is a double coat. The total area of newly produce membranes equals 200 μm 2 . The INM also provides membranes for envelopment by budding. The total requirement of membrane constituents in HSV-1 infection is reflected by the incorporation of [ 3 H]-choline, which was twice as high by 12 hpi compared to controls. Cellular proteins are embedded in nuclear membranes. These proteins are readily visible in fracture planes of the INM (Orci & Perrelet, 1975). Protein composition is drastically altered after HSV-1 infection, and cellular proteins are largely replaced by viral proteins (Johnson & Baines, 2011). After infection with any of the viruses, large areas of the INM were devoid of proteins as was described also in another study employing freeze-fracture technique (Haines & Baerwald, 1976). We thus conclude that the parts of the INM devoid of cellular proteins are the result of de novo synthesized phospholipids induced by HSV-1. Areas of the NE devoid of cellular proteins were also devoid of nuclear pores. The mean interpore area was almost as twice as large after HSV-1 infection. The maximal interpore area was even 10 times larger after HSV-1 infection compared to mock infection (Wild et al., 2009). Nuclear pore formation is induced by nucleoporins in the course of NPC assembly (Fichtman et al., 2010;Prunuske & Ullman, 2006) in cells undergoing mitosis. Areas of the NE devoid of cellular proteins and nuclear pores, hence, suggest that formation of nuclear pores ceased after infection with HSV-1.
Nucleus to cytoplasm capsid translocation R7041(∆Us3) capsids are retained within the nucleus to a much larger extent than wt HSV-1 capsids. RCs, the site of capsid assembly, are surrounded by a chromatin layer, which becomes reorganized in wt HSV-1 infection, enabling spread of capsids to the nuclear periphery. There they gain direct access to the INM because the nuclear lamina underlying the INM is disrupted (Scott et al., 2001;Simpson-Holley et al., 2004). In the absence of UL31 and UL34, reorganization of the chromatin layer around RCs and disruption of the nuclear lamina does not take place. Us3 kinase functions in association with phosphorylation of UL31/UL34 (Poon et al., 2006;Reynolds et al., 2001;Reynolds et al., 2002;Simpson-Holley et al., 2004) 2016;Hagen et al., 2015). This raises the question, whether the idea that the inability of phosphorylation of UL31/UL34 (Reynolds et al., 2001;Reynolds et al., 2002) is the cause for inhibited nucleus to cytoplasm capsid translocation. The discrepancy is that capsids of UL31/UL34 deletion mutants cannot bud whereas virions of Us3 deletion mutants accumulate in the PNS. Phosphorylation of gB was also claimed to be responsible for release of HSV-1 virions out of the PNS via de-envelopment because it enables gB to act as fusion protein (Wisner et al., 2009). On the other hand, gB deletion mutants are not retained in the PNS indicating that gB is not important for virion release at all (Farnsworth et al., 2007;Klupp et al., 2008). These conflicts can be explained by the erroneous interpretation of the virus transportation across the ONM to be fusion e.g. (Mettenleiter et al., 2013) ignoring the fundamentals of membrane bound transportation (Bonifacino & Glick, 2004;Hughson, 1999;Imai et al., 2006;Jahn et al., 2003;Kanaseki et al., 1997;Leabu, 2006;May, 2002;Mayer, 2002;Orci et al., 1981;Peters et al., 2004;White, 1992). The process shows all characteristics of budding. It takes place even in the absence of the fusion proteins gB/gH as obvious in Figure 2 in (Farnsworth et al., 2007) leading to accumulation of virions in the PNS. Therefore, phosphorylation of gB, UL31 and UL34 does not play any role either in budding of capsids at the INM nor in release of virions via interaction with the ONM as was suggested for PrV UL34 (Klupp et al., 2001). Us3 rather plays a significant role in intraluminal transportation ( Figure 13) of virions from the PNS into the ER (Schwartz & Roizman, 1969) and finally into Golgi cisternae (Leuzinger et al., 2005;Wild et al., 2018) in addition to its function in regulation of phospholipid-biosynthesis (Wild et al., 2012a) and apoptosis (Benetti & Roizman, 2004;Benetti & Roizman, 2007).

Conclusion
HSV-1 induces severe alterations in the nuclear architecture and at the nuclear periphery enabling capsid release via budding at the INM or via distortion of nuclear pores leading to breakdown of the nuclear envelope. Us3 kinase plays a significant role in alterations of the NE considering regulation of biosynthesis of phospholipids induced by HSV-1. Further investigations are needed to elucidate mechanisms leading to alterations of the NE, to understand their impact on HSV-1 envelopment, and possibly on diverse cellular functions since the NE plays other crucial roles (Wilson & Berk, 2010) in addition to maintaining the nucleocytoplasmic barrier for controlling nuclear import and export. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

If applicable, is the statistical analysis and its interpretation appropriate? Yes
Are all the source data underlying the results available to ensure full reproducibility? Yes

Are the conclusions drawn adequately supported by the results? Partly
No competing interests were disclosed.
I have read this submission. I believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard. , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is Licence properly cited.

Haidong Gu
Department of Biological Sciences, Wayne State University, Detroit, MI, USA In the manuscript "Nuclear envelope impairment is facilitated by herpes simplex virus 1 Us3 kinase", the authors used transmission electron microscopy, Cryo-field emission scanning electron microscopy and super resolution confocal microscopy to examine the sizes and numbers of nuclear pores and nuclear membrane surface area in wild type HSV-1 or DUs3 virus infected cells. They conducted quantitative analysis and confirmed several previous observations such as nuclear membrane expands in HSV-1 infected cells, Us3 deletion leads to folds and invaginations of nuclear membrane, and Us3 kinase activity is necessary for capsid release into the cytoplasm, etc. They also found that nuclear pore number decreased HSV-1 infected cells, with more interpore distance measured, compared to that of mock infected cells. The authors generated beautiful EM images to carefully describe nuclear morphological changes that help us understand the HSV-1 egress process. Several issues need to be addressed before the manuscript can be indexed.
In Figure 3, the authors demonstrated nuclear envelope impairment in wt HSV-1 infected cells. In Figure 4, they described folds and invaginations of nuclear membrane in DUs3 infected cells. It would be more scientifically accurate if the authors compare both wt and DUs3 in the same TEM experiment, define the descriptive criteria for pore dilation and pore impairment, and then quantitate the pore impairment side-by-side.
Via Figures 1 and 2, the authors showed pore size and number in mock and HSV-1 infected cells.

6.
Via Figures 1 and 2, the authors showed pore size and number in mock and HSV-1 infected cells. They went on to measure and count pore size and number for statistical analysis. However, the scale bars in Figures 1 and 2 are different. Visually it is difficult to compare the pore sizes or to understand what they meant for "large clearly confined holes". On page 7, three places in parenthesis it says "( Figure 5C)", but it actually refers to Figure 5D. Proofreading should be done before submission. It causes a great deal of confusion. Figure 6: what does the red-orange color represent in 6B and 6C. Describe them in the figure legend. Also on page 7, the last sentence of conclusion says "we conclude that nuclear membranes enlarge upon HSV-1 infection, but pore formation is delayed or inhibited, and insertion of host cell membrane proteins ceased", the last part of "insertion of host cell membrane proteins ceased" is unfounded from the data in this manuscript. On page 12, the authors showed NE impairment (Figure 3) in wt HSV-1 infected cells, and refer to previous publication that capsids are not released from PNS into cytoplasm in the absence of Us3 but capsids are found in the cytoplasm albeit in a number lower than wt infection, and then concluded DUs3 capsids enter cytoplasm via nuclear pore impairment. The part "via nuclear pore impairment" will need more evidence. Also on page 12, higher number of RC and capsids were observed in DUs3 infected cells, compared to wild type infection. How about the extracellular infectious virion production?

If applicable, is the statistical analysis and its interpretation appropriate? Yes
Are all the source data underlying the results available to ensure full reproducibility?
No source data required

Are the conclusions drawn adequately supported by the results? Partly
No competing interests were disclosed.

Competing Interests:
Reviewer Expertise: HSV-1 virus-host interaction I have read this submission. I believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.