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Synthesis and Characterization of (Z)-5-Arylmethylidene-rhodanines with Photosynthesis-Inhibiting Properties †

A series of rhodanine derivatives was prepared. The synthetic approach, analytical and spectroscopic data of all synthesized compounds are presented. Lipophilicity of all the discussed rhodanine derivatives was analyzed using the RP-HPLC method. The compounds were tested for their ability to inhibit photosynthetic electron transport (PET) in spinach (Spinacia oleracea L.) chloroplasts and reduce chlorophyll content in freshwater alga Chlorella vulgaris. Structure-activity relationships between the chemical structure, physical properties and biological activities of the evaluated compounds are discussed. For majority of the tested compounds the lipophilicity of the compound and not electronic properties of the R1 substituent were decisive for PET-inhibiting activity. The most potent PET inhibitor was (5Z)-5-(4-bromobenzylidene)-2-thioxo-1,3-thiazolidin-4-one (IC50 = 3.0 μmol/L) and the highest antialgal activity was exhibited by (5Z)-5-(4-chlorobenzylidene)-2-thioxo-1,3-thiazolidin-4-one (IC50 = 1.3 μmol/L).


Introduction
Pesticides are used to control pests. About 700 pesticides, including insecticides, herbicides and fungicides, act on perhaps some 95 biochemical targets in insects, weeds and destructive fungi. They must be effective without human or crop injury and safe relative to humans and the environment. Herbicides act mostly in plant-specific pathways, e.g., by blocking photosynthesis. Green plant pigments absorb light and with the coupled system of chloroplasts convert light energy to the chemical energy of adenosine triphosphate. Herbicides disrupting some of the processes unique to plants are of low toxicity to mammals, which lack analogous targets. Photosystem (PS) II was an early target for herbicides and is still highly important as the mode of action for about 50 commercial compounds. More than one target is involved since resistance to one PS II inhibitor does not confer cross-resistance to all others. The targets are denoted as the triazine, urea, and nitrile sites [1].
PS II electron transport inhibitors bind to the D1 protein of the PS II reaction centre, thus blocking electron transfer to plastoquinone. The inhibition of PS II electron transport prevents the conversion of absorbed light energy into electrochemical energy and results in production of triplet chlorophyll and singlet oxygen, which induces the peroxidation of membrane lipids [2]. The interaction of herbicides with the photosynthetic apparatus and a model for orientation of the herbicides within the three-dimensional structure of their target, the D1 protein of PS II, were reported by Draber et al. [3]. Many QSAR studies of PS II inhibitors with diverse chemical structures have emphasized the hydrophobic nature of the binding domain, with lipophilicity being the dominant determinant of Hill inhibition activity [4].
The inhibition of photosynthetic electron transport by rhodanine (IC 50 ≈ 1 mmol/L) was observed by Muro et al. [14]. In another study, rhodanine and rhodanine-N-acetic acid strongly inhibited growth of Daucus carota L. var. sativa DC even at low concentration 0.3 mmol/L. Both compounds also inhibited germination of seeds of Daucus carota L. var. sativa DC and Sesamum indicum (at 1 mmol/L) [13]. Chlorophyll synthesis in the cotyledons of Brassica rapa L. was strongly inhibited with rhodanine at the concentration of 0.3 mmol/L [11]. Similar results were later observed with N-aminorhodanine [13,15]. It was found that the free amino group at N-3 was essential for the greater inhibitory activity of rhodanine derivatives. It was also confirmed that the plant-growth inhibition by these derivatives was related to the chlorophyll content in treated plants [13].
Many low molecular weight drugs cross biological membranes through passive transport, which strongly depends on their lipophilicity. This property has a major effect on absorption, distribution, metabolism, excretion and toxicity (ADME/Tox) properties as well as biological activity. Lipophilicity has been studied and applied as an important drug property for decades [17]. This paper is a follow-up work to previous papers [18][19][20][21][22][23] aimed at studying relationships between the structure and lipophilicity of various compounds and their biological effects.

Chemistry
The synthesis of compounds is indicated in Scheme 1, and the compounds are listed in Table 1. Either commercially available rhodanines or prepared 3-(2-hydroxyethyl)rhodanine [24] and pyrazine-2-carbaldehyde [25] were used as starting materials. Most of the compounds were reported previously [26][27][28][29][30][31][32][33][34] (15)  Arylmethylidenerhodanines can form two isomers. According to references [35][36][37][38][39], syntheses of these compounds results in the Z-izomer. Configuration on the exocyclic double bond can be determined on the basis of NMR spectra where 1 H-NMR signals of the methine-group hydrogens for Z-isomers are more downfield compared to those of the E-isomers The experimental signals of methine-group hydrogens in the rhodanine derivatives studied in the present paper were compared with the values reported previously and the values predicted in silico (Table 1). It can be concluded that all arylmethylidenerhodanines reported in the present paper were obtained as single (Z)-isomers. In most cases experimental values are between the values predicted with CS ChemOffice 7.0 and those predicted with CS ChemOffice 10.0.

Lipophilicity
Hydrophobicities (log P/Clog P) of compounds 1-16 were calculated using two commercially available programs (ChemDraw Ultra 10.0 and ACD/LogP), and also measured by means of RP-HPLC determination of capacity factors k with a subsequent calculation of log k. The procedure was performed under isocratic conditions with methanol as an organic modifier in the mobile phase using an end-capped non-polar C 18 stationary RP column. The ChemDraw program did not resolve various lipophilicity values of individual positional isomers, that is, the same log P/Clog P data were calculated for isomers a-c, respectively for positional isomers 13 and 14. Due to high functionalization of these small molecules, the program ACD did not resolve various lipophilicity values of individual positional isomers 7-11 as well as 12 and 13. Therefore it can be assumed that the determined log k data specify lipophilicity within the individual series of compounds. The results are summarized in Table 1. 5-heteroarylmethylidene congeners. Unsubstituted (5Z)-5-benzylidene-2-thioxo-1,3-thiazolidin-4-one (1) is situated approx. in the middle of the lipophilicity range of the compound series. When the lipophilicity of 5-heteroarylmethylidene-2-thioxo-1,3-thiazolidin-4-ones 12-16 and compound 1 was compared, the lowest lipophilicity was surprisingly shown by compound 14 (pyridin-4-ylmethylidene) contrary to expected compound 15 (pyrazin-2-ylmethylidene), as it was predicted by all calculated log P/Clog P data. Lipophilicity within 5-heteroarylmethylidene series increased in the following order: pyridin-4-yl (14) < pyrazin-2-yl (15) < pyridin-3-yl (13) < furan-2-yl (16) < pyridin-2-yl (12); it is lower than the lipophilicity of unsubstituted benzylidene (1).
In general, experimentally-determined log k values correlated relatively poorly with the calculated log P/Clog P. These facts are possibly caused by limitations of the software used and intramolecular interactions between heteroatoms and substituents. Based on the facts discussed above, it can be stated that the lipophilicity of the discussed compounds is significantly influenced by intramolecular interactions.

Study of PET Inhibition in Spinach Chloroplasts
The inhibitory activity (IC 50 values) of rhodanine derivatives related to inhibition of photosynthetic electron transport (PET) in spinach (Spinacia oleracea L.) chloroplasts is summarized in Table 2. IC 50 values of compounds 2c, 3, 4a, 5, 6, 11c, 12 and 14 could not be determined due to low solubility of the compounds in the chloroplast suspension or due to very weak activity of the compounds; compound 11b interacted with the artificial electron acceptor 2,6-dichlorophenol-indophenol.
Replacement of H by C 2 H 4 OH group in R 2 substituent (compounds 7a and 11a, respectively) causing the increase of log k from 0.2254 to 0.4751 led to a slight activity increase. Similarly, more lipophilic compound 2a with R 1 : 2-OH (log k = 0.4664) exhibited higher inhibitory activity than 4-OH substituted compound 2c (log k = 0.2641), see Tables 1 and 2.
The dependence of inhibitory activity on compound lipophilicity expressed by log k for compounds with X=C (benzylidene derivatives) is shown in Figure 1. It is evident that particularly high inhibitory activity was exhibited by halogen substituted compounds 10c (4-Br) and 9c , and also with 7b (3-NO 2 ). High PET-inhibiting potency was also observed for 10b (3-Br) and 9b , and for 7c . Hence, electron-withdrawing substituents with higher values of Hammett's constants (σ constants for 4-Br: 0.232, 3-Br: 0.390, 4-Cl: 0.227, 4-NO 2 : 1.238, 3-NO 2 : 0.710 [40]) seem to contribute to the PET-inhibitory activity which is in a good agreement with the results obtained in the experiment with Chlorella vulgaris, see below. The superior activities of 9c and 10c in comparison with those of other compounds with similar lipophilicity could be connected with the favourable steric and electronic properties of 4-halogeno substituted compounds with respect to the site of inhibitory action in PS II of spinach chloroplasts. Table 2. The inhibitory activity of the selected rhodanine derivatives related to the inhibition of photosynthetic electron transport (PET inhibition) in spinach chloroplasts (Spinacia oleracea L.) as well as their activity related to the reduction of chlorophyll content in Chlorella vulgaris (expressed as IC 50 values or as reduction of chlorophyll content [%] caused by application of 100 μmol/L of the studied compound) in comparison with standard 3-(3,4-dichlorophenyl)-1,1-dimethylurea DCMU. Halogen as well as nitro substituents contributed to enhanced PET-inhibiting activity of 2,6-disubstituted 4-amidopyridines and 4-thioamidopyridines [41], pyrazine-2-carboxanilides [42,43], derivatives of 3-nitro-2,4,6-trihydroxybenzamide [44], substituted benzanilides and thiobenzanilides [45][46][47], or antialgal/PET-inhibiting activity of quinoline derivatives [47][48][49][50][51][52] and substituted salicylanilides [53]. Nonetheless, it is evident from the results of statistical analysis that the inhibitory activity of 12 compounds with X=C for which IC 50 in mol/L could be determined depended predominantly on compound lipophilicity expressed as log k, see The IC 50 value of the unsubstituted rhodanine related to PET inhibition in spinach chloroplasts was previously determined by Muro et al. [14] using spinach chloroplasts. However, the IC 50 value of approximately 1 mmol/L which was obtained for rhodanine during the normal 1 min assay decreased to 0.1 mmol/L when the assay was done after illumination for 3 min, indicating possible chemical modification of the compound.

Reduction of Chlorophyll Content in Chlorella vulgaris
The inhibitory activities (IC 50 values) of rhodanine derivatives related to the reduction of chlorophyll content in Chlorella vulgaris algae are summarized in Table 2. Ten compounds were tested for their inhibitory potency to reduce chlorophyll content in C. vulgaris suspension. Only for six of them (1, 2a, 3, 7b, 7c, 9c) the IC 50 value, i.e., concentration causing 50% reduction of chlorophyll concentration, could be determined, see Table 2. Therefore, the extent of chlorophyll content reduction in C. vulgaris suspension treated with equimolar concentration (100 μmol/L) of the studied compounds (1-3, 5, 6, 7b, 7c, 9c) was compared as well, see Table 2.
Based on dependencies of IC 50 on the lipophilicity expressed by log k, the compounds could be divided into 2 groups. For compounds with lower values of log k, ranging from 0.2399 (7b) to 0.2776 (3), the inhibitory activity decreased linearly with increasing log k value, whereas for compounds with log k raging from 0.4664 (2a) to 0.5936 (9c) the reverse relationship was observed.
Similar results were obtained also for the dependence of the reduction of chlorophyll content in C. vulgaris suspension treated with equimolar concentration (100 μmol/L) of the compounds on the log k values of the compounds. However, for the most lipophilic compound in the set (6, log k: 0.6466) strong decrease in potency was observed (Table 2). Thus, it could be assumed that in the investigated set of compounds higher values of Hammett's σ constants of the R 1 (4-Cl: 0.227, 4-NO 2 : 1.238, 3-NO 2 : 0.710 [40]) substituent contributed significantly to the increase of biological activity. Muro et al. [14] found that rhodanine applied at 1 mmol/L concentration completely inhibited growth of immature cells of Marchantia polymorpha within 90 hours and caused decrease of chlorophyll content. Algicidal properties of 5-(5-barbiturilidene)rhodanine against the algae species Scenedesmus, Plectonema, Anabena, Ankistrodesmus, Oscillatoria, Coccochloris, Chlamydomonas, Lyngbya, Synura and Chlorella were reported by Kerst et al. [8].

General
Commercially available rhodanine and aldehydes were used as starting materials. Methods reported previously were employed for preparation of 3-(2-hydroxyethyl)rhodanine [24] and pyrazine-2-carbaldehyde [25]. For analysis, the samples of compounds were dried for 24 hours in a dessicator at 1.33 kPa. The melting points were determined on a Boëtius apparatus HMK 73/4615 (VEB Analytik, Dresden, Germany) and are uncorrected. Elemental analyses were performed with an EA 1110 CHNS Analyzer (Carlo Erba). UV spectra (λ, nm) were determined on a Waters Photodiode Array Detector 2996 (Waters Corp., Milford, MA, USA) in ca. 6 × 10 −4 M methanolic solution and log ε (the logarithm of molar absorption coefficient ε) was calculated for the absolute maximum λ max of individual target compounds. Infrared spectra were recorded using KBr pellets on the FT-IR spectrometer Nicolet 6700 (Nicolet-Thermo Scientific, USA). Wavenumbers are given in cm −1 . All 1 H-NMR and 13 C-NMR spectra were recorded with a Varian Mercury-VxBB 300 spectrometer

General procedure for synthesis of arylmethylidenerhodanines 1-16
An equimolar amounts of an aldehyde and rhodanine or 3-(2-hydroxyethyl)rhodanine (0.015 mol) were heated under a reflux condenser with ethanol (15 mL) and concentrated ammonia solution (1.1 mL) until all solid components dissolved. The solution of ammonium chloride (1.00 g) in 2 mL of hot (80 °C) distilled water was then added, and the reaction mixture was refluxed for 2 hours. After cooling, the separated solid was filtered through a sintered glass, washed with distilled water (50 mL) and then with 50% ethanol (50 mL). The product was crystallized from anhydrous ethanol.    3H, m, H4´, H5´, H6´); 13 C-NMR (DMSO-d 6 ), δ: 195.7, 169.3, 135.0, 132.3, 131.0, 130.7, 129.5, 129.3, 128.5, 126.3.  (11a). The product was separated from the reaction mixture by means of column chromatography using Silicagel 60 Fluka (0.040-0.063 mm) as adsorbent and light petroleum/ethyl acetate 6:4 as mobile phase. After crystallization from ethanol a yellow crystalline compound was obtained. Yield 5%; Mp 105-107 °C; Anal. Calcd. for C 10 (13   (HPLC -Mili-Q Grade, 30%) was used as a mobile phase. The total flow rate of the column was 0.9 mL/min; injection volume 30 μL, column temperature 30 °C and sample temperature 10 °C were used. The detection wavelength of 210 nm was chosen. The KI methanolic solution was used for the dead time (t D ) determination. Retention times (t R ) were measured in minutes. The capacity factors k were calculated using the Empower™ 2 Chromatography Data Software according to formula k = (t R − t D )/t D , where t R is the retention time of the solute, whereas t D denotes the dead time obtained using an unretained analyte. Log k, calculated from the capacity factor k, is used as the lipophilicity index converted to log P scale. The log k values of the individual compounds are shown in Table 1.

Study of Photosynthetic Electron Transport (PET) Inhibition in Spinach Chloroplasts
Chloroplasts were prepared from spinach (Spinacia oleracea L.) according to ref. [54]. The inhibition of photosynthetic electron transport (PET) in spinach chloroplasts was determined spectrophotometrically (Genesys 6, Thermo Scientific, USA) using an artificial electron acceptor 2,6-dichlorophenol-indophenol (DCIPP) according to ref. [55], and the rate of photosynthetic electron transport was monitored as a photoreduction of DCPIP. The measurements were carried out in phosphate buffer (0.02 mol/L, pH 7.2) containing sucrose (0.4 mol/L), MgCl 2 (0.005 mol/L) and NaCl (0.015 mol/L). The chlorophyll content was 30 mg/L in these experiments, and the samples were irradiated (~100 W/m 2 ) from 10 cm distance with a halogen lamp (250 W) using a 4 cm water filter to prevent warming of the samples (suspension temperature 22 °C). The studied compounds were dissolved in DMSO due to their limited water solubility. The applied DMSO concentration (up to 4%) did not affect the photochemical activity in spinach chloroplasts. The inhibitory efficiency of the studied compounds was expressed by IC 50 values, i.e., by molar concentration of the compounds causing 50% decrease in the oxygen evolution rate relative to the untreated control. The comparable IC 50 value for the selective herbicide 3-(3,4-dichlorophenyl)-1,1-dimethylurea, DCMU (Diuron ® ) was about 1.9 μmol/L [56]. The results are summarized in Table 2.

Reduction of Chlorophyll Content in Green Algae Chlorella vulgaris Beij.
Green algae Chlorella vulgaris Beij. were cultivated statically at room temperature according to ref. [57] (photoperiod 16 h light/8 h dark; photosynthetically active radiation (PAR) 80 μmol/m 2 s; pH 7.2). The effect of rhodanine compounds on algal chlorophyll (Chl) content was determined after 7-day cultivation in the presence of the compounds tested, expressing the response as percentage of the corresponding values obtained for control. The Chl content in the algal suspension was determined spectrophotometrically (Genesys 6, Thermo Scientific, USA) after extraction into methanol according to Wellburn [58]. The Chl content in the suspensions at the beginning of cultivation was 0.01 mg/L. Because of their low water solubility, the tested compounds were dissolved in DMSO. DMSO concentration in the algal suspensions did not exceed 0.25% and at the end the control samples contained the same DMSO amount as the suspensions treated with the tested compounds. The antialgal activity of most effective compounds was expressed as IC 50 value (the concentration of the inhibitor causing a 50% decrease in the content of Chl as compared with the control sample) or by percentual reduction of chlorophyll content (with respect to the control) after treatment with equimolar concentration of the studied compounds (100 μmol/L). The IC 50 value for the standard, the selective herbicide 3-(3,4-dichlorophenyl)-1,1-dimethylurea, DCMU (Diuron ® ) was about 7.3 µmol/L. The results are summarized in Table 2.

Conclusions
The series of thirty rhodanine derivatives is presented. Their lipophilicity was determined using a well established RP-HPLC method. The compounds were tested for their activity related to inhibition of photosynthetic electron transport (PET) in spinach (Spinacia oleracea L.) chloroplasts and reduction of chlorophyll content in freshwater alga Chlorella vulgaris. Structure-activity relationships between the chemical structure, physical properties and biological activities of the evaluated compounds are discussed. (5Z)-5-(4-Bromobenzylidene)-2-thioxo-1,3-thiazolidin-4-one (10c) showed the highest PET-inhibition activity among the discussed compounds. (5Z)-5-(4-Chlorobenzylidene)-2thioxo-1,3-thiazolidin-4-one (9c) expressed the highest reduction of chlorophyll content in freshwater alga Chlorella vulgaris. The results of the present study confirm previous observations regarding the influence of rhodanine and its derivatives on plants and show that both lipophilicity and character of substituents are important for their potency. These noteworthy compounds surely deserve further attention as potential pesticides and/or drugs.