{'fraction_non_alphanumeric': 0.03366637706342311, 'fraction_numerical': 0.03282170093638382, 'mean_word_length': 4.939936926605505, 'pattern_counts': {'":': 0, '<': 0, '<?xml version=': 0, '>': 0, 'https://': 0, 'lorem ipsum': 0, 'www.': 1, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
Retinoic Acid Signaling Plays a Restrictive Role in Zebrafish Primitive Myelopoiesis

Retinoic acid (RA) is known to regulate definitive myelopoiesis but its role in vertebrate primitive myelopoiesis remains unclear. Here we report that zebrafish primitive myelopoiesis is restricted by RA in a dose dependent manner mainly before 11 hpf (hours post fertilization) when anterior hemangioblasts are initiated to form. RA treatment significantly reduces expressions of anterior hemangioblast markers scl, lmo2, gata2 and etsrp in the rostral end of ALPM (anterior lateral plate mesoderm) of the embryos. The result indicates that RA restricts primitive myelopoiesis by suppressing formation of anterior hemangioblasts. Analyses of ALPM formation suggest that the defective primitive myelopoiesis resulting from RA treatment before late gastrulation may be secondary to global loss of cells for ALPM fate whereas the developmental defect resulting from RA treatment during 10–11 hpf should be due to ALPM patterning shift. Overexpressions of scl and lmo2 partially rescue the block of primitive myelopoiesis in the embryos treated with 250 nM RA during 10–11 hpf, suggesting RA acts upstream of scl to control primitive myelopoiesis. However, the RA treatment blocks the increased primitive myelopoiesis caused by overexpressing gata4/6 whereas the abolished primitive myelopoiesis in gata4/5/6 depleted embryos is well rescued by 4-diethylamino-benzaldehyde, a retinal dehydrogenase inhibitor, or partially rescued by knocking down aldh1a2, the major retinal dehydrogenase gene that is responsible for RA synthesis during early development. Consistently, overexpressing gata4/6 inhibits aldh1a2 expression whereas depleting gata4/5/6 increases aldh1a2 expression. The results reveal that RA signaling acts downstream of gata4/5/6 to control primitive myelopoiesis. But, 4-diethylamino-benzaldehyde fails to rescue the defective primitive myelopoiesis in either cloche embryos or lycat morphants. Taken together, our results demonstrate that RA signaling restricts zebrafish primitive myelopoiesis through acting downstream of gata4/5/6, upstream of, or parallel to, cloche, and upstream of scl.


Introduction
Vertebrate hematopoiesis arises successively in primitive and definitive waves at anatomically distinct sites during development [1]. Zebrafish primitive hematopoiesis occurs in the rostral end of anterior lateral plate mesoderm (ALPM) that is also known as rostral blood island (RBI), and the intermediate cell mass (ICM) that is an analog to extraembryonic yolk sac blood islands of mammals and birds [2]. RBI produces myeloid cells, head endothelium and endocardium whereas ICM, derived from posterior lateral plate mesoderm (PLPM), gives rise to erythrocytes, endothelial linage and a few myeloid cells [2,3]. Zebrafish definitive hematopoiesis begins within the ventral wall of dorsal aorta in an aorta-gonad-mesonephros region at about 31 hpf (hour post fertilization). The precursors later colonize into kidney marrow (the equivalent of avian and mammalian bone marrow), thymus and pancreas, in which hematopoietic stem cells differentiate into erythroid, myeloid, and lymphoid lineages for lifetime [2,3,4].
Zebrafish primitive myelopoiesis is initiated in RBI to form anterior hemangioblasts marked by expressing transcription factors scl, lmo2, gata2 and etsrp between 3-to 5-somite stages [2,3,5]. With development, a subset of the scl + precursors acquire myeloid cell fates by expressing myeloid-specific transcription factor pu.1 (also known as spi1) [6,7]. During 11-to 15-somite stages, the pu.1 + precursors migrate toward head midline. They partially converge between eye and heart primordium and then abruptly migrate laterally, scattering into single cells across yolk sac [7,8,9]. After 18-somite stage, the precursors decline their pu.1 expression but express mature myeloid-markers such as lcp1 (lymphocyte cytosolic plastin 1, also known as l-plastin) identifying all myeloid cells including macrophages and neutrophils, csf1r (colony stimulating factor 1 receptor, also known as fms) marking macrophages and mpx (myeloperoxidase, also known as mpo) labeling neutrophils, respectively [6,7,8,10]. It is believed that some macrophages later migrate posteriorly toward ICM whereas the myeloid precursors originated in ICM give rise to at least some granulocytes there [11]. The myeloid cells eventually develop into functional cells as early as 26 hpf [8].
Retinoic acid (RA), a derivative of vitamin A, not only plays crucial roles in vertebrate early development but also influences growth and differentiation of different adult cell types [12]. Since all-trans RA was introduced to treat human acute promyelocytic leukemia (APL) through promoting terminal granulocytic differentiation of malignant promyelocytes in the late 1980s [13], a number of studies have been performed to assess roles of RA signaling in regulating normal myelopoiesis [14,15]. In vitro cell culture studies on the hematopoietic precursor cells derived from normal bone marrow or fetal liver suggest that RA generally enhances growth and differentiation of granulocyte progenitors [15] but may have different effects on hematopoietic cells depending on their maturational states [15,16]. Analyses of the female SENCAR mice fed a vitamin A-deficient (VAD) diet reveal that shortage of RA signaling causes a dramatic expansion of myeloid cells in bone marrow, spleen and peripheral blood whereas addition of RA to the VAD diet completely reverses the abnormality [17]. The in vivo results suggest that the myeloid cell expansion is a direct result of RA deficiency. Consistent with the VAD mice, both cellular retinolbinding protein type I (CRBPI) knockout mice fed a VAD diet and the mice treated with RA receptor (RAR) antagonist BMS493 display a similar expansion of myeloid cells associated with an increase in immature granulocytes [18].
Although a lot of researches have been performed on analyzing roles of RA signaling in definitive myelopoiesis and differentiation of myeloid cells, its roles in primitive myelopoiesis remain unknown. In this study, we report that excessive RA suppresses zebrafish primitive myelopoiesis by restricting formation of anterior hemangioblasts in a dose dependent way. The defective myelopoiesis resulting from RA treatment before the end of gastrulation may be secondary to global loss of cells for ALPM fate whereas the defect resulting from RA treatment during 10-11 hpf should be ascribed to ALPM patterning shift. Performing analyses of epistatic relationships between RA signaling and the genes controlling zebrafish primitive myelopoiesis, we demonstrate that RA signaling acts downstream of gata4/5/6, upstream of, or parallel to, cloche, and upstream of scl to restrict zebrafish primitive myelopoiesis.

RA inhibits zebrafish primitive myelopoiesis in a dose dependent way
To examine roles of RA signaling in primitive myelopoiesis, we treated zebrafish embryos with RA at concentrations of 6.25, 12.5, 25 and 50 nM from 1-2-cell stage through 26 hpf, respectively. We then analyzed their expressions of myeloid cell markers lcp1 and mpx at 26 hpf [6,8,10]. In control embryos, cells expressing lcp1 and mpx were found to disperse throughout embryos ( Figure 1A and 1G). The number of cells expressing lcp1 and mpx was slightly reduced in the embryos treated with 6.25 nM RA ( Figure 1B and 1H), significantly reduced in the embryos treated with 12.5 nM RA ( Figure 1C and 1I) and 25 nM RA ( Figure 1D and 1J), and almost completely abolished in the embryos treated with 50 nM RA ( Figure 1E and 1K). The results demonstrate that exogenous RA inhibits zebrafish primitive myelopoiesis dosedependently.
To examine whether elevation of endogenous RA levels by depleting Cyp26s, the enzymes responsible for metabolizing RA in vivo [12], limits zebrafish primitive myelopoiesis, we examined expressions of lcp1 and mpx in cyp26s morphants at 26 hpf. When embryos were microinjected with control morpholino (MO), they displayed normal expressions of lcp1 and mpx (data not shown). However, the embryos microinjected with cyp26s-specific MOs exhibited significantly reduced number of cells expressing lcp1 and mpx ( Figure 1F and 1L). Quantitative analysis by real-time PCR confirmed that expression levels of both lcp1 and mpx in cyp26s morphants were significantly lower than (P,0.05) those in control embryos ( Figure S1). The results reveal that cyp26s involve the maintenance of normal primitive myelopoiesis in zebrafish.
RA plays its repressive role in zebrafish primitive myelopoiesis mainly before 11 hpf To determine when RA plays its repressive roles in zebrafish primitive myelopoiesis, we examined expressions of myeloid markers lcp1 and mpx in the embryos treated with 50 nM RA from 3 to 5, 5 to 7, 7 to 9, 9 to 11, 11 to 13, and 13 to 26 hpf, respectively. The results showed that almost no expression of lcp1 and mpx were found in the 26 hpf embryos treated with RA for 2 h during 3-5, 5-7 and 7-9 hpf ( Figure 2B-D and 2I-K), and only a few myeloid cells expressing lcp1 and mpx ( Figure 2E and 2L) were found in the embryos treated with RA during 9-11 hpf. However, less affected expressions of lcp1 and mpx were found in the embryos treated with RA during 11-13 hpf ( Figure 2F and 2M) and nearly normal primitive myelopoiesis were found in the embryos treated with RA during 13-26 hpf ( Figure 2G and 2N). The results suggest that RA signaling plays its repressive role in inhibiting zebrafish primitive myelopoiesis mainly at the developmental stages before 11 hpf.
Because RA restricts the primitive myelopoiesis in a dose dependent way (Figure 1), it is interesting to know whether the less affected and nearly normal primitive myelopoiesis in the zebrafish embryos treated with RA during 11-13 and 13-26 hpf respectively ( Figure 2G and 2N) is due to the low amount of RA (50 nM). To test it, we analyzed the embryos treated with 5 times higher concentration (250 nM) of RA from 10 to 11, 11 to 13, and 13 to 22 hpf respectively. Counting the number of cells expressing myeloid markers lcp1 in embryos at 22 hpf, we found the control embryos possessed 80.2617.7 (n = 30) lcp1 + cells ( Figure 2O and 2S). The embryos treated with 250 nM RA for 1 h from 10 to 11 hpf only had 2.565.6 (n = 27) lcp1 + cells ( Figure 2P and 2S). The embryos treated with 250 nM RA for 2 h from 11 to 13 hpf held 17.7615.2 (n = 30) lcp1 + cells ( Figure 2Q and 2S). The embryos treated with 250 nM RA from 13 to 22 hpf carried 36.7614.9 (n = 32) lcp1 + cells ( Figure 2R and 2S). Though they exhibited significantly reduced number of lcp1 + cells compared with control embryos, the embryos treated with 250 nM RA from 11 to 13 hpf or 13 to 22 hpf had much more lcp1 + cells than the embryos treated with 250 nM RA for only 1 h from 10 to 11 hpf ( Figure 2S). Similar results were observed when embryos were treated with 1000 nM RA (data not shown). Taken together, the results demonstrate that RA plays its repressive roles in zebrafish primitive myelopoiesis mainly at the developmental stage before 11 hpf and treating embryos with high concentration of RA (250 nM) during 10-11 hpf almost abolishes the primitive myelopoiesis.

RA inhibits zebrafish primitive myelopoiesis by repressing formation of anterior hemangioblasts
Zebrafish primitive myelopoiesis is initiated and specified in RBI during 11-14 hpf [3,5]. To explore how RA acts to restrict primitive myelopoiesis, we first detected myeloid precursor maker pu.1 expression in 14 hpf embryos treated with 50 nM RA from 1-2-cell stage to 14 hpf or 250 nM RA from 10 to 11 hpf, respectively. The results showed that expression of pu.1 at 14 hpf was almost completely abolished in RBI of all the embryos treated with RA in two different ways ( Figure 3B and 3C). Next, we found expressions of anterior hemangioblast markers scl, lmo2, etsrp and gata2 were all significantly inhibited in RBI of the RA-treated embryos at 14 hpf ( Figure 3D-O). The results suggest excessive RA represses formation of anterior hemangioblasts, resulting in developmental loss of myeloid cells.
The inhibited formation of anterior hemangioblasts by excessive RA treatment from 1-2-cell to 14 hpf might be secondary to global loss of ALPM fate whereas the developmental defect by excessive RA treatment during 10-11 hpf should be due to ALPM patterning shift Because RA is a posteriorizing factor for patterning anteriorposterior axis of embryos and excessive RA causes anterior truncation of embryos [12,19], the defect of anterior hemangioblast formation from excessive RA treatment from 1-2-cell to 14 hpf could be due to global loss of ALPM tissue fates. To test this hypothesis, we first examined hoxb5b expression in the embryos treated with 50 nM RA from 1-2-cell to 11 hpf. Hoxb5b is a transcription factor that acts downstream of RA signaling in the forelimb field to restrict heart field potential in zebrafish embryos [20]. Normally, it is not expressed in LPM yet but in spinal cord at 11 hpf ( Figure 4A) [20]. When embryos were treated with 50 nM RA from 1-2-cell stage to 11 hpf, we found hoxb5b was strongly induced to anteriorly expand its expression in spinal cord and ectopically express in LPM, especially in the presumptive ALPM of the RA-treated embryos ( Figure 4B). Consistently, 25% (7/28) and 43% (15/35) of the embryos overexpressed with hoxb5b  exhibited significantly reduced expressions of lcp1 and mpx at 24 hpf, respectively ( Figure 4D-G); however, knocking down hoxb5b did not rescue the suppressed primitive myelopoiesis in the RAtreated embryos (data not shown). Next, we examined gata4 expression in the RA-treated embryos. Gata4 is a transcription factor that is normally expressed in ALPM of zebrafish embryos during anterior hemangioblast specification [21]. Treated with 50 nM RA from 1-2-cell stage to 14 hpf, the embryos exhibited almost abolished expression of gata4 at 14 hpf ( Figure 4I). The results are consistent with the idea that the inhibited formation of anterior hemangioblast resulting from excessive RA treatment from 1-2-cell stage to 14 hpf might be ascribed to global loss of cells for ALPM fate.
To explore direct roles of RA signaling in zebrafish primitive myelopoiesis, we have to exclude the global effect of excessive RA on embryonic development. We therefore analyzed the embryos treated with 250 nM RA for 1 h from 10 hpf to 11 hpf. As shown in Figure 4C, hoxb5b did not expand its expression to ALPM though it was indeed induced to expand its expression in spinal cord and ectopically express in PLPM of the RA-treated embryos. Consistently, the RA-treated embryos displayed a slightly reduced gata4 expression in the region between the anterior end of its expression domain and the anterior end of ntl expression domain (marker for axial mesoderm) ( Figure 4K) compared to control embryos ( Figure 4J) whereas they had a significantly reduced expression in the region between the posterior end of its expression domain and the anterior end of ntl expression domain ( Figure 4K) compared to control embryos ( Figure 4J). Because the rostral part of ALPM is responsible for the formation of anterior hemangioblasts and its caudal part is responsible for the formation of cardiac precursors [21], the results strongly suggest that treatment with RA during 10-11 hpf does not abolish the anterior mesoderm of ALPM.
Previously, it was identified that embryos with inhibited anterior hemangioblast specification exhibited ectopic cardiac progenitors in the rostral portion of ALPM whereas overexpression of hemangioblast master regulators suppressed the cardiac development [22]. Because the 250 nM RA treatment during 10-11 hpf inhibited formation of anterior hemangioblasts ( Figure 3C, 3F, 3I, 3L, 3O), we therefore asked whether the RA treatment skewed the developmental potential of the rostral tissues into caudal fates. To answer the question, we examined expression of hand2, the heart field marker [22,23], in the RA-treated embryos. In normal embryos, hand2 was confined to the caudal region of ALPM and whole PLPM ( Figure 4L). Treated with 250 nM RA during 10-11 hpf, the embryos exhibited greatly reduced expression of hand2 in caudal portion of ALPM but ectopical expression of hand2 in the whole rostral portion of ALPM ( Figure 4M). Overexpressed with scl and lmo2 (master regulators of hemangioblasts), the control embryos displayed significantly reduced expression of hand2 in the caudal portion of ALPM ( Figure 4N) whereas the RA-treated embryos showed greatly reduced (15/34) or even completely lost (19/34) expression of hand2 not only in the rostral portion but also in the caudal portion of ALPM ( Figure 4O). The results suggest that RA treatment during 10-11 hpf shifts ALPM patterning by skewing the developmental potential of rostral tissues into the caudal fate.
RA signaling acts upstream of scl/lmo2 to control zebrafish primitive myelopoiesis scl and lmo2 are known the two key master regulators for regulating anterior hemangioblasts [22]. Because the 250 nM RA treatment during 10-11 hpf inhibited expressions of anterior hemangioblasts master regulators scl and lmo2 ( Figure 3C, 3F, 3I, 3L, and 3O), we hypothesized that RA signaling acts upstream of scl/lmo2 to control zebrafish primitive myelopoiesis. To confirm this hypothesis, we performed rescue experiments by overexpressing scl and lmo2 into the RA-treated embryos. The results showed that the overexpression not only rescued the suppressed expressions of both etsrp and gata2 in the rostral part but also induced their ectopical expressions in the caudal part of ALPM (Figure 5B, 5D; 5F and 5H). Consequently, the inhibited expressions of both lcp1 and mpx were partially rescued at 24 hpf when the RA-treated embryos were microinjected with scl and lmo2 mRNA ( Figure 5J, 5L, 5N and 5P). Interestingly, the control embryos overexpressed with scl and lmo2 exhibited similar expression levels of lcp1 and mpx to wild type embryos at 24 hpf ( Figure 5I, 5K, 5M and 5O) though they had significantly up-regulated expressions of etsrp and gata2 in ALPM at 14 hpf ( Figure 5A, 5C, 5E and 5G). Consistently, our quantitative RT-PCR analysis of the expression levels of lcp1 and mpx for the myeloid cells originated from RBI by removing the trunk and tail of the embryos with different treatments showed that overexpressions of scl and lmo2 significantly up-regulated (P,0.01) the expressions of lcp1 and mpx in the RA-treated embryos but did not change them (P.0.05) in control embryos ( Figure S2).
Taken together, the results suggest that RA signaling acts upstream of scl/lmo2 to control zebrafish primitive myelopoiesis.
RA signaling acts upstream of, or parallel to, cloche to inhibit zebrafish primitive myelopoiesis cloche acts upstream of scl to regulate development of hematopoietic and vascular tissues [24,25,26]. To explore epistatic relationship of RA signaling with cloche, we should examine expression changes of cloche in RA signaling-altered embryos. Unfortunately, we could not monitor cloche expressions because of low expression of the only candidate lycat [27]. We therefore examined expressions of lcp1 and mpx in cloche embryos treated with 10 mM DEAB (4-diethylamino-benzaldehyde), a retinal dehydrogenase inhibitor, to see whether decreasing RA signaling could rescue the defect of primitive myelopoiesis in cloche. cloche embryos hardly expressed lcp1 and mpx ( Figure 6B and 6H) while their heterozygous siblings showed normal expression levels ( Figure 6A and 6G). When treated with 10 mM DEAB, the sibling embryos of cloche exhibited significantly increased expressions of lcp1 and mpx ( Figure 6D and 6J), which is consistent with RA's suppressing role in zebrafish primitive myelopoiesis. However, DEAB treatment could not rescue expressions of the two genes in cloche embryos ( Figure 6C and 6I). It is known that knocking down lycat phenocopies cloche [27]. We therefore examined the primitive myelopoiesis in lycat morphants that were treated with 10 mM DEAB. Similar to that in cloche embryos, DEAB treatment did not rescue expressions of lcp1 and mpx that were depleted in lycat knockdown embryos ( Figure 6E, 6F, 6K and 6L). Taken together, these results support that RA signaling lies upstream of, or parallel to, cloche to suppress the primitive myelopoiesis.
RA signaling acts downstream of gata4/5/6 to control zebrafish primitive myelopoiesis gata4, gata5 and gata6 are known to lie above cloche and scl controlling primitive myelopoiesis [21]. Because gata4 expression was slightly reduced in the 250 nM RA-treated embryos ( Figure 4K), we therefore examined whether the expressions of gata5 and gata6 were changed in the embryos with the same treatment. When compared to control embryos ( Figure S3A and S3C), the RA-treated embryos exhibited similar expression of gata5 but somehow increased expression of gata6 in the region between the anterior ends of their expression domains and the anterior end of ntl expression domain, respectively ( Figure S3B and S3D); however, they displayed significantly increased gata5 expression but greatly reduced gata6 expression in the region between the posterior end of their expression domains and the anterior end of ntl expression domain, respectively ( Figure S3). Because the rostral part of ALPM is responsible for the formation of anterior hemangioblasts [21], these results imply that RA signaling should not act upstream of gata4/5/6 to control the primitive myelopoiesis.
To explore whether RA signaling works downstream of gata4/ 5/6, we first examined whether reducing RA signaling could reverse the phenotype of the abolished primitive myelopoiesis in gata4/5/6 depleted embryos. Because gata4 is not expressed in gata5/6 double morphants, the double knockdown is actually a triple knockdown [21]. We therefore depleted expressions of gata4/5/6 by microinjecting gata5-MO and gata6-MO into zebrafish embryos. When the gata4/5/6 depleted embryos were treated with 10 mM DEAB from 1-2-cell stage to 24 hpf, the  Figure 7C and 7H). Additionally, treating the gata4/5/6 depleted embryos with 10 mM DEAB starting from different developmental stages including 3 hpf, 5 hfp, 7 hpf and 9 hpf but not 11 hpf well rescued the ablated expressions of lcp1 and mpx ( Figure S4). The result suggests that RA signaling works downstream gata4/5/6 to inhibit the primitive myelopoiesis. To further support this conclusion, we performed overexpression experiment. We found that overexpressions of gata4 and gata6 in control embryos significantly increased expressions of lcp1 and mpx ( Figure 7D and 7I). However, the increased expressions of lcp1 and mpx were greatly reduced when the embryos were treated with 250 nM RA during 10-11 hpf (Figure 7E and 7J). Quantitative analyses of the embryos with different treatments by real-time RT-PCR confirmed that RA treatment blocked the increased expressions of lcp1 and mpx in the embryos overexpressed with gata4/6 mRNAs ( Figure S5). Taken together, the results demonstrate that RA signaling works downstream of gata4/5/6 to control zebrafish primitive myelopoiesis.
aldh1a2 is the major gene that is in charge of RA synthesis during zebrafish early development [28,29]. To explore whether it is responsible for mediating gata4/5/6 signaling to control the primitive myelopoiesis, we examined expression changes of aldh1a2 in gata4/5/6 depleted or gata4/6 overexpressed embryos. The results showed that aldh1a2 expression was not changed in the two types of embryos at 5 hpf ( Figure 8A-C). It was slightly expanded in the ventral mesoderm of gata4/5/6 depleted embryos but significantly decreased in gata4/6 overexpressed embryos at 7 hpf and 9 hpf respectively ( Figure 8D-I). At 11 hpf and 13 hpf, aldh1a2 was significantly increased and ectopically expressed in LPM of gata4/5/6 depleted embryos whereas its expression was significantly reduced in both LPM and somites in gata4/6 overexpressed embryos ( Figure 8J-O). Quantitative analyses by real-time RT-PCR confirmed that its expression was significantly increased in gata4/5/6 depleted embryos ( Figure 8P) but reduced in gata4/6 overexpressed embryos ( Figure 8Q) at 7, 9, 11 and 13 but not 5 hpf, respectively. Moreover, the abolished expressions of lcp1 and mpx in gata4/5/6 depleted embryos were partially rescued to express respectively when the gata4/5/6 depleted embryos were microinjected with aldh1a2-MO ( Figure 8R-W). Quantitative analysis by real-time PCR further confirmed this rescue result ( Figure 8X). Taken together, our observations suggest aldh1a2 is one of the candidate genes that work downstream of gata4/5/6 to control the primitive myelopoiesis.

Discussion
Unlike mammals and birds whose primitive hematopoiesis generates a small number of primitive macrophages and no granulocytes, zebrafish primitive hematopoiesis produces functional granulocytes and macrophages [2,6,8]. Although it is not known how zebrafish primitive myeloid pathway relates to mammalian definitive myelopoiesis, the primitive myelopoiesis has been widely used to assess myelopoiesis [11,30]. RA has been implicated in regulating definitive myelopoiesis [14,15], but little is known about its role in primitive myelopoiesis. Here we report that RA suppresses zebrafish primitive myelopoiesis in a dose  Figure 6D and 6J). Our results are consistent with the previous observations from VAD mice, CRBPI-knock-out mice and RAR antogonist BMS493 treated mice showing that shortage of RA signaling causes myeloid cell expansion [17,18], and recently researches revealing that DEAB increases myeloid cells in zebrafish [31]. However, studies on APL treatment reveal that RA relieves the disease by promoting terminal granulocytic differentiation of malignant promyelocytes [12,15]. Consistently, in vitro researches show that RA enhances differentiation of granulocyte progenitors derived from the hematopoietic precursor cells in bone marrow or fetal liver [14] and generation of differentiated hematopoietic cells from human embryonic stem cell-derived hemato-vascular precursors [32]. Taken together, these observations suggest that RA restricts normal myelopoiesis but promotes myeloid differentiation of hematopoietic precursors.
It is known that excessive RA posteriorizes vertebrate embryos during gastrulation [12,19], raising the possibility that the developmental loss of ALPM markers from excessive RA treatment at early development might be secondary to global loss of cells for ALPM tissue fate. Consistent with the idea, our results showed that treating embryos with 50 nM RA from 1-2-cell stage to 11 hpf caused hoxb5b, an RA direct target gene that acts downstream of RA signaling in the forelimb field to restrict heart field potential in zebrafish embryos [20], expanding its expression to whole ALPM of 11 hpf embryos ( Figure 4B). Additionally, gata4, an ALPM marker [21], was almost abolished its expression in whole ALPM of the 50 nM RA-treated embryos ( Figure 4I), which supports the conclusion that excessive RA treatment at early stage may cause global loss of cells for ALPM tissue fate.
However, the induced expression of hoxb5b was not expanded to ALPM but confined to PLPM in the embryos treated with 250 nM RA during 10-11 hpf ( Figure 4C). Consistently, the RA-treated embryos only slightly reduced expression of gata4, an ALPM marker [21], in the rostral portion of ALPM ( Figure 4K). Moreover, overexpression of scl and lmo2 partially rescued the primitive myelopoiesis abolished in the RA-treated embryos ( Figure 5J, 5L, 5N and 5P) but it cannot increase the development of myeloid cells ectopically in wild type embryos [36] (also see Figure 5I, 5K, 5M and 5O). Taken together, these observations suggest the suppressed formation of anterior hemangioblasts in the 250 nM RA-treated embryos cannot be ascribed to the abolishment of anterior mesoderm in ALPM. Therefore, the embryos treated with 250 nM RA during 10-11 hpf provide us a useful model for analyzing direct roles of RA signaling in zebrafish primitive myelopoiesis.
The entire ALPM in early zebrafish embryo possesses cardiac developmental potential and the specification of anterior hemangioblasts represses formation of cardiac progenitors in the rostral portion of ALPM [22]. Embryos with defects in anterior hemangioblast specification exhibit ectopic cardiac progenitors in the rostral portion whereas overexpression of hemangioblast master regulators suppresses the cardiac development in the caudal portion of ALPM [22]. In this study, we report that hand2, the marker of cardiac precursors normally expressed in the caudal end of ALPM ( Figure 4L) [22,23,37], was ectopically expressed in the whole rostral portion of ALPM in the RA-treated embryos that lacked anterior hemangioblasts ( Figure 4M) whereas overexpressions of scl and lmo2 greatly reduced or even eliminated the ectopic expression of the cardiac marker that was expressed in the RAtreated embryos ( Figure 4M and 4O). The results demonstrate that RA signaling shifts the developmental potential of the anterior mesoderm into the posterior fate of ALPM, enabling the precursors in this region will no longer develop into myeloid cells.
Zebrafish primitive myelopoiesis is genetically controlled by many genes. scl plays a pivotal role in primitive hematopoiesis [3]. It works together with lmo2 to define hemangioblast during zebrafish early development [38]. Epistatic analyses have shown that cloche acts upstream of scl, lmo2, and etsrp [5,26,33,39], and gata4/5/6 acts upstream of, or parallel to cloche and upstream of scl [21] to control zebrafish primitive myelopoiesis. Recently, RA was demonstrated to inhibit the commitment of mesodermal cells to hematopoietic fates by functioning downstream of cdx4 and upstream of scl [35]. In this study, we report that RA suppresses the primitive myelopoiesis by inhibiting expressions of scl and lmo2 ( Figure 3F and 3I) and the inhibited primitive myelopoiesis is partially rescued when scl and lmo2 are overexpressed ( Figure 5L and 5P). The results demonstrate that RA signaling works upstream of scl to regulate the primitive myelopoiesis. However, the abolished primitive myelopoiesis in neither cloche embryos nor lycat morphants can be rescued by DEAB (Figure 6), indicating that RA works upstream of, or parallels to, cloche.
RA has been shown to enhance GATA4 expression in F9 cells [40] and P19 cells [41], and improve both GATA4 and GATA6 but not GATA5 expression in mouse embryonic stem cells (ES) [42,43]. In VAD quail embryos, GATA4 fails to be expressed whereas adding RA restores its expression pattern [44]. In Xenopus embryos, excessive RA causes expanded expressions of GATA4/ 5/6 [45]. Consistent with its enhancing expressions of the GATA factors, RA commits mouse ES cells to differentiate into endoderm by enhancing expressions of GATA6 and GATA4 [42,46], and directs urothelial specification of the ES cells by activating GATA4/6 signaling [43]. However, gata4 expression was significantly reduced or completely abolished respectively in zebrafish embryos at 8-somite stage that were treated with 100 nM RA or 300 nM RA at 40% epiboly for 1 h [34]. We show here that the embryos treated with 50 nM RA from 1-2-cell stage to 14 hpf displayed almost no gata4 expression ( Figure 4I) whereas the embryos treated with 250 nM RA during 10-11 hpf exhibited slightly reduced gata4 expression ( Figure 4K), unchanged gata5 expression ( Figure S3B) and somehow increased gata6 expression ( Figure S3D) in the rostral portion of their ALPM. Moreover, we revealed that DEAB could well rescue the abolished primitive myelopoiesis in gata4/5/6 depleted embryos whereas RA blocked the increased primitive myelopoiesis in gata4/6 overexpressed embryos (Figure 7). Taken together, our results demonstrate that RA signaling acts downstream of gata4/5/6 to control zebrafish primitive myelopoiesis. Consistently, we found overexpressions of gata4/6 significantly inhibited expression of aldh1a2, the major gene that is responsible for RA synthesis during early development [28,29], whereas depleting gata4/5/6 increased aldh1a2 expression in zebrafish embryos ( Figure 8). However, knocking down aldh1a2 only partially rescued the abolished primitive myelopoiesis in gata4/5/6 depleted embryos (Figure 8), which is consistent with recent survey revealing that knocking down both aldh1a2 and aldh1a3 cannot recapitulate the hematopoietic expansion like happening in DEAB-treated embryos [31]. The results suggest that other DEAB-sensitive aldehyde dehydrogenases should work downstream of gata4/5/6 to restrict zebrafish primitive myelopoiesis.
In summary, our results demonstrate that RA signaling acts downstream of gata4/5/6, upstream of, or parallel to, cloche, and upstream of scl to suppress zebrafish primitive myelopoiesis by restricting the formation of anterior hemangioblasts ( Figure S6) in a dose dependent way.

Ethics statement
Zebrafish used in this study are housed in the zebrafish facility of Model Animal Research Center (MARC), Nanjing University, in accordance with IACUC-approved protocol (MARC-AP#: QZ01).

Pharmaceutical treatment of zebrafish embryos with RA and DEAB
All-trans RA, 4-diethylamino benzaldehyde (DEAB) and dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich (MO, USA). A stock solution of 0.2 mM RA and 1 mM DEAB were prepared with DMSO and stored at -80uC. Embryos collected from wild type zebrafish or cloche mutant [39] were grown at 28.5uC and staged as previously reported [47]. Different concentrations of RA or DEAB were administrated to increase or reduce RA signaling in zebrafish embryos, respectively. The final concentration of DMSO in each treatment and control is 0.1%.

Microinjection of morpholinos into zebrafish embryos
Morpholinos (MOs) were purchased from Gene Tools (http:// www.gene-tools.com). The sequences of antisense MOs were listed in Table S1. Control MO was the standard MO provided by Gene Tools. MOs were dissolved in nanopure water and injected into the embryos at 1-2-cell stages. The injected amount per embryo was about 1 nl solution containing 1 ng cyp26a1-MO plus 2 ng cyp26b1-MO plus 2 ng cyp26c1-MO, 8 ng aldh1a2-MO plus 6.25 ng gata5-MO plus 1.25 ng gata6-MO, 6.25 ng gata5-MO plus 1.25 ng gata6-MO, or 4 ng lycat-MO, respectively.
In vitro synthesis of mRNA and microinjection of mRNAs into zebrafish embryos To synthesize mRNA in vitro, we first cloned the full-length coding sequences of gata4 [48], gata6 [49], hoxb5b [34], lmo2 [24] and scl [33] by RT-PCR using primers listed in Table S2. The cDNAs were cloned into pGEM-T vector (Promega, USA) using HF PCR Kit (Takara, Japan) and then confirmed their identities by direct sequencing from both ends. The fragments were then cloned into the modified expression vector of pxT7 with 59-and 39-UTR of zebrafish b-globin [50] by digesting with EcoRI. The capped and tailed mRNA of these genes was generated from linearized pxT7 plasmid containing zebrafish gata4, gata6, hoxb5b, lmo2 or scl coding sequence using the mMESSAGE mMACHINE T7 Ultra Kit (Ambion, USA). The synthesized mRNAs were further purified with RNeasy Kit (Qiagen, German) to remove the free nucleotides. Embryos were microinjected at 1-2-cell stage. The injected amount per embryo was about 1 nl solution containing 100 pg of scl and lmo2, 150 pg of hoxb5b, or 25 pg of gata4 and gata6, respectively.

Whole mount in situ hybridizations
Whole mount in situ hybridizations were performed as described previously [51]. The templates for anti-sense RNA probes including etsrp [52], gata2 [24], gata5 [53], and hand2 [23] were cloned using the primers listed in Table S3. The templates for antisense RNA probes including scl, gata4, gata6 and hoxb5b are the same as those used for mRNA synthesis. The plasmids containing the probe templates of mpx, lcp1, pu.1 [6], ntl and lmo2 [24] were kindly given by Dr. Yeh [54] and Dr. Zhang [55]. Other probes including myoD, cyp26a1 and aldh1a2 were used as previously reported [19]. Photomicrographs were taken using Olympus DP71 digital camera (Olympus, Japan). Digital images were further processed for brightness and contrast with Adobe Photoshop software.

Real-time RT-PCR assay
Quantitative reverse transcription-polymerase chain reaction (qRT-PCR) was performed to examine the relative expression levels of aldh1a2, lcp1, mpx and b-actin (for control) using the ABI Prism 7300 Sequence Detector (PE Biosystems, USA). Total RNAs were extracted from 30 embryos using Trizol reagent (Invitrogen, USA) for each assay. RNA was reverse-transcribed and PCR was performed using the SYBR Green method following the manufacturer's protocol. Primers used for qRT-PCR were listed in Table S4. Relative quantification of each gene expression was performed by the comparative CT methods. Transcript level of examined genes was normalized to b-actin mRNA level according to standard procedures. Data were shown as means 6 SD (standard deviation). Comparisons between numerical data were evaluated by unpaired Student t test. P value less than 0.05 was considered statistically significant. Every experiment was independently performed at least twice. Figure S1 qRT-PCR analysis shows the relative expression levels of lcp1 and mpx are significantly reduced in cyp26s morphants. Embryos were microinjected with control MO (Control MO) or cyp26a1-MO plus cyp26b1-MO plus cyp26c1-MO (cyp26s MO) at 1-2-cell stage and then examined for expressions of myeloid markers lcp1 and mpx at 26 hpf by qRT-PCR. *: P,0.05. (TIF) Figure S2 qRT-PCR analysis shows overexpression of scl and lmo2 into zebrafish embryos partially rescues the defective primitive myelopoiesis in the embryos treated with 250 nM RA during 10-11 hpf. Embryos were treated with vehicle DMSO (WT), microinjected with scl and lmo2 mRNA at 1-2 cell stage (scl/lmo2 mRNA), treated with 250 nM RA during 10 to 11 hpf (250 nM RA 10-11 hpf), or microinjected with scl and lmo2 mRNA at 1-2-cell stage and then treated with 250 nM RA during 10 to 11hpf (RA+scl/lmo2 mRNA), respectively. To exclude the myeloid cells derived from ICM, embryos that were removed tails and trunks at 24 hpf were used to detect relative expression levels of myeloid markers lcp1 and mpx by qRT-PCR. Overexpression of scl and lmo2 did not change expression levels of lcp1 and mpx in wild type embryos but significantly rescued the inhibited expressions of lcp1 and mpx in the embryos treated with 250 nM during 10-11 hpf. **: P,0.01. (TIF) Figure S3 Effect of excessive RA treatment during 10-11 hpf on expressions of gata5 and gata6 in the RA-treated embryos at 14 hpf. All flat-mounted embryos are positioned anterior left and dorsal front. Embryos treated with vehicle DMSO (A, C) and 250 nM RA from 10-11 hpf were examined for expressions of gata5 (A, B) and gata6 (C, D) at 14 hpf, respectively. Expression of myoD in somites was used for staging and ntl expression was used for labeling embryonic axial mesoderm. The number shown in the lower left-hand corner of each panel is the number of embryos exhibiting the typical phenotype shown in the panel to the number of embryos totally observed. The embryos treated with 250 nM RA from 10-11 hpf exhibited similar expression of gata5 but somehow increased expression of gata6 in the region between the anterior ends of their expression domains and the anterior end of ntl expression domain; however, they displayed significantly increased gata5 expression but greatly reduced gata6 expression in the region between the posterior ends of their expression domains and the anterior end of ntl expression domain, respectively. (TIF) Figure S4 The ablated primitive myelopoiesis in gata4/ 5/6-depleted embryos can be rescued by treating with 10 mM DEAB starting before 11 hpf. All embryos were positioned anterior left and lateral front. Embryos were microinjected with gata4-MO and gata6-MO at 1-2-cell stage (B-H, J-P) and then treated with vehicle DMSO (B, J) or 10 mM DEAB continuously starting from 1-2-cell stage (C, K), 3 hpf (D, L), 5 hpf (E, M), 7 hpf (F, N), 9 hpf (G, O), and 11 hpf (H, P), respectively. The embryos were then grown together with wild type control embryos (A, I) to 24 hpf for examining expressions of myeloid markers lcp1 (A-H) and mpx (I, P) respectively. The number shown in the lower left-hand corner of each panel is the number of embryos exhibiting the typical phenotype shown in the panel to the number of embryos totally observed. Treatment with DEAB before 11 hpf can well rescue the abolished primitive myelopoiesis in gata4/5/6-depleted embryos (C-G; K-O) whereas the treatment after 11 hpf hardly rescued the primitive myelopoiesis (H, P). (TIF) Figure S5 qRT-PCR analysis shows that the increased primitive myelopoiesis due to overexpressing gata4/6 is blocked by treating the embryos with 250 nM RA during 10-11 hpf. Embryos were microinjected with gata4 mRNA plus gata6 mRNA at 1-2-cell stage. They were treated with 250 nM RA (gata4/6 mRNA+RA) or vehicle DMSO (gata4/6 mRNA) during 10-11 hpf and then grown with wild type embryos (WT) to 24 hpf for examining expression level changes of myeloid markers lcp1 and mpx by qRT-PCR. Overexpressing gata4/6 into wild type embryos significantly increased expressions of lcp1 and mpx but the