{'fraction_non_alphanumeric': 0.04219675633679713, 'fraction_numerical': 0.03151403321355735, 'mean_word_length': 4.852514919011083, 'pattern_counts': {'":': 0, '<': 1, '<?xml version=': 0, '>': 0, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 3, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 5, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
Laccase-Catalyzed Decolorization of Malachite Green: Performance Optimization and Degradation Mechanism

Malachite green (MG) was decolorized by laccase (LacA) of white-rot fungus Cerrena sp. with strong decolorizing ability. Decolorization conditions were optimized with response surface methodology. A highly significant quadratic model was developed to investigate MG decolorization with LacA, and the maximum MG decolorization ratio of 91.6% was predicted under the conditions of 2.8 U mL-1 LacA, 109.9 mg L-1 MG and decolorization for 172.4 min. Kinetic studies revealed the Km and kcat values of LacA toward MG were 781.9 mM and 9.5 s-1, respectively. UV–visible spectra confirmed degradation of MG, and the degradation mechanism was explored with liquid chromatography–mass spectrometry (LC-MS) analysis. Based on the LC-MS spectra of degradation products, LacA catalyzed MG degradation via two simultaneous pathways. In addition, the phytotoxicity of MG, in terms of inhibition on seed germination and seedling root elongation of Nicotiana tabacum and Lactuca sativa, was reduced after laccase treatment. These results suggest that laccase of Cerrena was effective in decolorizing MG and promising in bioremediation of wastewater in food and aquaculture industries.


Introduction
Malachite green (MG) is a triphenylmethane dye used in aquaculture to control protozoan and fungal infections of farmed fish. MG is also used in food, medical and textile industries. MG is readily absorbed by fish and reduced to leucomalachite green (LMG), a colorless, toxic metabolite [1][2][3]. MG is environmentally persistent; MG and LMG can accumulate in fish tissues. MG has a wide toxicity spectrum covering microorganisms and higher eukaryotes [1,4]. Its toxic effects include organ damages, impaired growth and reproduction, developmental abnormalities and mutagenic/carcinogenic potentials [3,5]. Furthermore, the dye effluent can be disposed of untreated into water bodies and be used for agriculture, thereby affecting soil fertility [6]. Although banned in many countries, MG is still used in many areas worldwide due to its efficacy, low cost and availability and thereby continues to pose threats to the environment, food safety and human health. Physical and chemical methods of MG removal have been proposed, such as adsorption [7] and photodegradation [8,9]. These processes are often ineffective, not economically feasible and can cause secondary pollution. On the other hand, biodegradation has shown promise in MG treatment [10,11]. Triphenylmethane reductase and cytochrome P450 mediate MG reduction to LMG [5,[12][13][14]. Therefore, enzyme-catalyzed MG oxidation without forming LMG derivatives is desired for MG decolorization and detoxification [2,4,[15][16][17][18][19][20][21].
White rot fungi are effective lignin degraders by secreting ligninolytic enzymes including lignin peroxidases (EC 1.11.1.14), manganese peroxidases (EC 1.11.1.13) and laccases (EC 1.10.3.2) [22]. All these enzymes can degrade MG, and the specific enzyme in action depends on the fungus [21]. Laccases have attracted much research interest because they are environmental friendly and can oxidize a wide variety of phenolic and non-phenolic compounds. Belonging to the family of multicopper enzymes, laccases contain four (one type 1, one type 2 and two type 3) copper atoms per molecule and catalyze one-electron oxidation of substrates concomitant with four-electron reduction of molecular oxygen to water [22,23]. Laccase have important applications in various processes such as dye decolorization and detoxification, wastewater treatment and bioremediation [24]. The substrate range of laccases can be further expanded with small molecular weight mediators, such as 2,2'-azino-bis (3-ethylbenzothiazoline-6-sulfonate) (ABTS) and 1-hydroxybenzotriazole (HBT). The laccase/mediator system can facilitate the oxidation pathway; different radicals may be formed, depending on whether a mediator is involved or not [22,[25][26][27][28].
In search of efficient laccase producers to promote industrial applications of laccases, we isolated a novel white rot fungus Cerrena sp. strain HYB07 with high laccase yield and strong decolorization ability towards structurally different dyes, such as MG [29]. In the present work, a major laccase produced by HYB07, namely LacA, was used to decolorize MG in the absence of a mediator. Response surface methodology (RSM) was adopted to optimize decolorization conditions with respect to dye concentration, enzyme activity and reaction time. The degradation products were identified with liquid chromatography-mass spectrometry (LC-MS), and a novel degradation model of MG was proposed.

Chemicals and organism
MG and ABTS were purchased from Sigma-Aldrich. All reagents were of analytical grade. The white rot fungus Cerrena sp. strain HYB07 was maintained on potato dextrose agar slants at 4°C and stored in the culture collection of College of Biological Sciences and Technology, Fuzhou University, China.

Enzyme production and purification
Fermentation of Cerrena sp. H'YB07 was carried out in potato dextrose broth supplemented with 0.5% yeast extract and 0.4 mM CuSO 4 . After 3 d, the fermentation broth was harvested, diluted in 25 mM Tris-HCl buffer (pH 7.5) and applied to a HiTrap DEAE FF column (GE Healthcare). Adsorbed proteins were eluted with a linear gradient of 0-1 M NaCl in 25 mM Tris-HCl buffer (pH 7.5). Fractions with laccase activity were collected and checked by SDS-PAGE. The major laccase produced by HYB07, LacA (GenBank accession number KF317949) [29], was purified to electrophoretic homogeneity. The specific activity of LacA was 1952.4 U mg -1 . The enzyme activity assay was carried out in a citrate-phosphate buffer (50 mM, pH 3.0) at 45°C, and oxidation of ABTS was monitored spectrophotometrically at 420 nm (ε = 36,000 M -1 cm -1 ) for 5 min [29]. One unit of enzyme activity was defined as the amount of laccase required to oxidize 1 μmol ABTS per min.

MG decolorization
The absorbance peak of MG was determined to be 614 nm by UV-visible analysis. Purified LacA was used to decolorize MG at 28°C in an incubator (ZXSD-1270, LABWIT Scientific, Shanghai, China) in the dark. The 4 mL reaction mixture contained 50 mM citrate-phosphate buffer (pH 6.0), dye and laccase. Decolorization efficiency was monitored at 614 nm with a UV-Vis spectrophotometer (U-2910, Hitachi, Japan) and calculated according to the following formula: Where D is the decolorization efficiency (%), A 0 is MG absorption before LacA treatment, and A 1 is the residual MG absorption after LacA treatment.

Performance optimization of MG decolorization by RSM
Central composite design (CCD) was chosen for the optimization of MG decolorization process by LacA. Three independent variables, namely LacA concentration (X 1 ), dye concentration (X 2 ) and time (X 3 ) were evaluated at five levels (Table 1), and the percentage of MG decolorization was the dependent variable (response). The following equation was used to establish the quadratic model: Table 1. The CCD design and the observed responses for MG decolorization. where Y is the predicted response; X 1 , X 2 and X 3 are the coded factors; β 0 is a constant coefficient; β 1 , β 2 , β 3 are the linear coefficients; β 11 , β 22 , β 33 are the quadratic coefficients; β 1 β 2 , β 1 β 3 , β 2 β 3 are the interactions of the coefficients. Design-Expert version 8.0 (Stat-Ease Inc., Minneapolis, USA) was used for experimental design and statistical analysis. Validation of the optimum decolorization results predicted by the model was conducted in triplicate.

Identification of degradation products
For LC-MS, MG decolorization was performed at 25°C in water instead of buffer. Aliquots (2 μL) were injected into an HPLC system (Agilent 1200 Series, equipped with a Phenomenex Luna C-18 analytical column of 2.0 mm x 150 mm length and 3 μm particle size) coupled with Agilent 6224 Accurate-Mass Time of Flight (TOF) MS. The compounds were resolved by using solvent A: 5 mM ammonium acetate supplemented with 0.5% formic acid and solvent B: acetonitrile. The flow rate was kept at 0.2 mL min -1 . A linear gradient was set as follows: t = 0-2, A = 95; t = 4-5, A = 40; t = 7-11, A = 10; t = 12-15, A = 95. The column effluent was introduced into the electrospray ionization source of the mass spectrometer in positive ion mode. The MS parameters were as follows: capillary voltage 3.5 kV; nebulizer pressure 50 psi; drying gas flow 11 L min -1 ; drying gas temperature 360°C; fragmentor voltage 130 V. LC-TOF MS accurate mass spectra were recorded across the range 70-400 m/z. Data processing was carried out with Applied Biosystems/MDS-SCIEX Analyst QS software (Frankfurt, Germany) with accurate mass application-specific additions from Agilent MSD TOF software. Accurate-mass internal mass calibration was performed automatically using a dual-nebulizer ion source. The reference masses were 121.0509 m/z and 922.0098 m/z.

Phytotoxicity study
Toxicity of MG before and after LacA decolorization was assayed with Nicotiana tabacum and Lactuca sativa with respect to seed germination and seedling root (radical) elongation. The seeds were placed in petri dishes (at least 30 seeds each plate) on filter paper pre-wet with MG solution (100 mg L -1 ) before and after LacA treatment. The petri dishes were sealed with parafilm and stratified at 4°C in the dark for 3 d to promote synchronous seed germination. The plates were then transferred to a plant growth chamber (PRX-250B, Saife Instruments, Ningbo, China) at 22°C. Distilled water was used as the control. Germination rate and root length were determined after 7 d. Radical emergence was used to determine germination; radical growth was measured by using the Image-Pro software (Media Cybernetics, San Diego, CA, USA).

Performance optimization of MG decolorization by LacA
Since the enzyme-mediated decolorization process is influenced by parameters such as dye concentration, enzyme activity and decolorization time, optimization of LacA-mediated MG decolorization was carried out. RSM is a statistical technique for optimization of multiple variables to achieve the best performance conditions with fewest possible experiments. CCD was chosen to determine the optimum requirement of enzyme (X 1 ), dye (X 2 ), and time (X 3 ) for maximum dye decolorization ( Table 1). The mathematical expression of the relationship to MG decolorization with the variables X 1 , X 2 and X 3 is as follows: Y ð% decolorizationÞ ¼ 79:78 þ 11:91 X 1 À 0:68 X 2 þ 16:88 X 3 þ 0:68 X 1 X 2 À 1:03 X 1 X 3 þ 0:78 X 2 X 3 À 7:30 X 1 2 À 1:32 X 2 2 À 9:29 X 3

2
ANOVA of the regression model demonstrated a high significance (P < 0.0001) of the model and an insignificant lack of fit ( Table 2). The determination coefficient R 2 was 0.9581, and adjusted R 2 (Adj-R 2 ) was 0.9204. Adequate precision, a measure of the signal to noise ratio, was 15.93, indicating an adequate signal. Variables X 1 , X 3 , X 1 2 and X 3 2 were significant model terms. Interactions between the studied variables for dye decolorization are shown in 3D surface plots (Fig 1). The optimum levels of coded variables for maximum decolorization (91.64%) were predicted as X 1 = 0.763, X 2 = 0.199 and X 3 = 0.874. These values correspond to LacA = 2.76 U mL -1 , MG = 109.93 mg L -1 and time = 172.44 min. Experimental validation (LacA = 2.8 U mL -1 , MG = 110 mg L -1 and time = 172 min) was carried out using the optimized variables identified by RSM, and a decolorization efficiency of 89.88% with a 3.23% experimental error was obtained, which was close to the predicted value of 91.64%. The good correlation between the predicted and actual optimized decolorization efficiencies verified the validity of the response model. CCD has been successfully applied for modeling and optimization of biological decolorization processes of dyes including reactive black 5 [30,31], Remazol Brilliant Blue R [32] and indigo carmine [30]. In these CCD studies, HBT is the most frequently used laccase mediator in order to achieve high decolorization efficiencies. For example, a maximum decolorization efficiency of approximately 96% was predicted with the conditions of 95.80 mg L -1 MG, 2.16 U mL -1 partially purified laccase from Pleurotus florida, 0.85 mM HBT and 3.02 h at pH 6.0 and 37°C [20]. Despite the efficacy of laccase mediators in enhancing dye decolorization, they add processing costs and can have adverse impacts on the enzyme activity or the environment [15,16,28]. In our hands, at the same pH value of 6.0 as previous work [20], a similarly high decolorization efficiency was attained in the absence of a mediator at 28°C, demonstrating the potential and benefits of LacA in industrial applications. LacA was also efficient and eco-friendly compared with a recombinant manganese peroxidase isozyme H4, the latter decolorized 100 mg L -1 MG to a degree of 72% with MnSO 4 and hydrogen peroxide [33].

Kinetic study
The kinetic parameters of LacA-mediated MG decolorization were estimated from nonlinear regression of the Michaelis-Menten equation. The K m and k cat values were 781.9 mM and 9.5 s -1 , respectively. Therefore, LacA had lower affinity as well as turnover rate for MG than for  [29]. The K m value (781.9 mM) was also greater than that of a triphenylmethane reductase from Citrobacter sp. Strain KCTC 18061P (0.53 mM); the reductase converts MG to LMG [12].

LC-MS analysis of MG degradation products
UV-visible spectra of the MG solution showed not only disappearance of the major peak of MG absorbance at 614 nm, but also two minor peaks at 315 nm and 425 nm, respectively, after LacA treatment (Fig 2), implying that decolorization was a result of biodegradation. This was confirmed by LC-TOF MS analysis. MG (m/z 329.20) concentration significantly decreased with LacA decolorization (Fig 3). Furthermore, unlike MG transformation with fungi Cunninghamella elegans [5], Penicillium pinophilum and Myrothecium roridum [13] or bacteria Exiguobacterium sp. [14] and Citrobacter sp. [12], in LacA-mediated MG degradation, reduction of MG to LMG was not detected. Development of a feasible decolorization scheme requires identification and evaluation of toxicity/mutagenicity of the major and stable products of the process [10,11,18]. Here, LC-TOF MS identified seven intermediates of LacA-catalyzed MG transformation (Fig 4). Among these intermediates, tetradesmethyl MG (m/z 273.14), (methyl aminophenyl)-phenylmethanone (m/z 212.11) and (amino phenyl)-phenyl methanone (m/z 198.09) were more persistent products but diminished after prolonged incubation (e.g., overnight incubation).

LacA-mediated MG degradation
Based on the intermediates identified as well as previous studies on MG degradation, we proposed a model for LacA-mediated MG degradation consisting of two parallel and competing degradation pathways (Fig 5). Pathway I started with successive N-demethylation of MG, similar to proposed pathways of MG breakdown catalyzed by a laccase [16,18]. It is noteworthy that N-demethylation (i.e., complete conversion of MG to desmethyl MG, didesmethyl MG and tridesmethyl MG) does not result in MG decolorization. Further degradation or polymerization must occur to destroy the chromophore [16].
Besides pathway I, LacA also mediated MG degradation via a second pathway (pathway II). In this pathway, MG was first hydroxylated to its carbinol form [34], which was quickly broken down at the bond between the central carbon atom and the N,N-dimethylamino phenyl ring  LacA-Mediated Decolorization of Malachite Green into (dimethyl amino-phenyl)-phenyl-methanone and N,N-dimethylaniline. (dimethyl aminophenyl)-phenyl-methanone was then sequentially N-demethylated to (amino phenyl)-phenyl methanone. This pathway has not been previously reported for MG transformation catalyzed by only laccase (without a mediator), although it is the pathway of choice in the presence of a laccase mediator [18].  Simultaneous presence of both pathways in our model probably contributed to fast and efficient degradation of MG and could be accounted for by the speculated high redox potential of LacA. Bioinformatics analysis suggests that LacA is a high-redox-potential laccase, considering that three amino acids, namely Ser113, Glu456 and Phe459, conserved among fungal laccases with high redox potentials, were also present in LacA [23,35].
Reported fungal laccases have diverse redox potentials ranging from 400 to 800 mV, which are normally higher than those of plant laccases and other blue copper oxidases [22]. The efficiency of substrate oxidation by a laccase depends on the difference between the redox potentials of the substrate and the type 1 Cu. Oxidation of substrates with redox potentials higher than those of laccases, such as non-phenolic compounds, can be facilitated by electron transfer mediators. A laccase mediator oxidized first by a laccase can in turn oxidize non-phenolic substrates, thus enhancing the performance and efficiency of the laccase. For example, after oxidation by a laccase, di-cation ABTS 2+ has a redox potential of 885 mV and oxidizes the substrate via an electron transfer route. In contrast, another synthetic mediator HBT or natural phenolic mediators follow a hydrogen atom transfer mechanism [22]. Laccase/mediator oxidation of the substrate may proceed differently from laccase oxidation of the substrate without a mediator [22,[26][27][28]. Indeed, based on absorbance maximum changes, Papinutti and Forchiassin proposed that the mechanism of MG modification by Fomes sclerodermeus laccase is different when HBT is added [25]. Later, Chhabra et al. identified two independent, mutually exclusive degradation pathways of MG by laccase in the presence and absence of a mediator. With the laccase/ABTS system, MG is hydroxylated and broken down (pathway II), while laccase alone initiates MG transformation with stepwise N-demethylation (pathway I) [18]. This was not the case in our analysis; MG degradation with LacA or LacA/ABTS rendered identical intermediates from both pathways.

Phytotoxicity study
Toxicity of MG solution before and after LacA treatment was evaluated with Nicotiana tabacum and Lactuca sativa in terms of seed germination and seedling root elongation (Table 3). While complete germination was observed in the water control, MG inhibited germination of both Nicotiana tabacum and Lactuca sativa seeds by 36% and 75%, respectively. Decreased seedling root elongation by MG was also observed, and the average seedling root length in MG was approximately only 30% of that in the water control. After LacA-mediated degradation, inhibition of MG on seed germination was eliminated, and MG inhibition on root elongation was alleviated. Incomplete restoration of radical length indicated that compared to germination, seedling root elongation was more sensitive to residual MG metabolites present after LacA-catalyzed decolorization. Similar to our phytotoxicity test results, MG impaired seed germination and root elongation rates of Phaseolus mungo and Triticum aestivum, and MG degradation by laccase from bacteria Kocuria rosea [36] or white-rot fungus Pleurotus ostreatus [19] resulted in products with lower toxicity on plant growth. Du et al. have reported complete and LacA-Mediated Decolorization of Malachite Green partial elimination of germination inhibition for Lucerne (Medicago sativa Linn.) and Chinese cabbage (Brassica chinensis Linn.) seeds, respectively, after MG removal with Pseudomonas sp. strain DY1 for 12 h [37]. Seedling root length of both plant species in treated MG solution was also partially restored to the level of the water control [37]. Reduction of phytotoxicity of other dyes, such as RBBR [32] and Red BLI [6], upon enzymatic decolorization has also been described, and incomplete reversion of root elongation in treated dye solutions are often observed.

Conclusions
MG decolorization by a novel laccase, LacA, was optimized with CCD to achieve a maximum decolorization efficiency of 91.64% in the absence of a laccase mediator. Based on the intermediates identified by LC-MS, LacA catalyzed MG transformation via two separate, co-existing pathways, likely owing to the high redox potential of the enzyme and contributing to effective decolorization and degradation of MG. Accompanying decolorization, LacA reduced toxicity of MG. LacA is a promising candidate for applications in MG removal as well as bioremediation of food and aquaculture wastewater.