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Tarigan S, Sumarningsih. Generation of scFv-monoclonal antibody Avian Influenza Diagnostic Tests

Tarigan S, Sumarningsih. 2019. Generation of scFv-monoclonal antibody Avian Influenza Diagnostic Tests. JITV 24(1): 29-38. DOI: http://dx.doi.org/10.14334/jitv.v24i1.1871 The need for rapid diagnostic tools or pointofcare diagnostic tests for Avian Influenza in Indonesia is very high and the price of these imported diagnostic tools is very expensive. As a result, a large budget requires to provide the needs. The main component of a rapid diagnostic tool is the monoclonal antibody (mAb) specifically recognized influenza viruses. The objective of this study was to produce mAb that can recognize all subtypes of Avian Influenza viruses using the phage display technology. Influenza-A focused scFv commercial library was panned using alternating recombinant H1N1 NP and H5N1 virions. Whereas, bacteriophages bound to the panning baits were eluted with serum from H5N1-infected chickens. Phagemid from suppressor E. coli (TG1) infected with bacteriophage displaying anti-NP on its surface was isolated and then transformed into a non-suppressor E. coli (HB2151) to express NP-scFv. Monoclonal NP-scFv antibody with a molecular weight of about 27 kDa was purified from the culture supernatant using a nickel-chromatography column. The amount of pure NP-scFv obtained was around 1.2 mg /L culture. As an additional component for its use in immunoassays, antibody to NP-scFv was produced in rabbits. The generating polyclonal antibody recognized the NP-scFv specifically and sensitively. The anti-NP-scFv monoclonal antibody and the anti rabbit scFv polyclonal antibody produced in this study are envisaged appropriate for the development of diagnostic tools for point-of-care for Avian Influenza.


INTRODUCTION
The H5N1 avian influenza seems to be one of the most devastating zoonotic diseases ever known to date (FAO 2013). One of the main factors causing the rapid, wide spread of the disease was the delay in diagnosis and implementing actions to eradicate the disease. Diagnosis of infectious diseases that spread rapidly such as AI H5N1 requires the availability of rapid or point-of -care diagnostic (POC) tools. Most of the POC diagnostic tools for Influenza both for human and poultry are based on monoclonal antibody specific against the nucleoprotein of the type A Influenza virus (Tarigan 2016). The main advantages of using monoclonal include batch-to-batch homogeneity and excellent specificity. Polyclonal antibodies are much easier, cheaper and faster to produce but the variability between different batches produced in different animals at different times is unavoidable. In addition, since polyclonal antibody comprises huge number of antibodies recognizing different epitopes, cross-reaction is inescapable (Liu 2014;Shalit et al. 1985).
Two approaches to produce monoclonal antibodies are currently available. The first approach was the hybridoma technology introduced by Kohler and Milstein (Kohler & Milstein 1975). This approach involves fusion of B-cells from immunized donor animal with myeloma cell to generate immortal cells producing monoclonal antibody. Some drawbacks of this approach include the use of animals and the limited species of animal as the source of antibody that can be used. So far, myeloma cells that available for that purpose are only mouse and rat origin (Liu 2014).
The second approach for production of monoclonal antibody is the phage display technology introduced in the late 20 th century (Smith & Petrenko 1997). Briefly, the approach began by isolation of mRNA from Blymphocites from donor animals or human, either naïve or immune to a relevant antigen. The heavy variable (VH) and light variable (VL) segments are amplified and connected with a short linker with PCR then batchcloned into a special phagemid vector, next to the pIII protein of filamentous bacteriophage. A competent E. coli strain is transformed with the phagemid and is rescued with a helper phage to derive a single chain variable fragment (scFv)-phage library. Each phage in the library recognizes different epitope through the scFv that fused to the bacteriophage surface protein PIII. The diversity of a scFv library is usually in the range of millions to trillions. The next most important step is to select and purify scFv-phages that recognize the desired antigen by the protocol known as panning. Phagemids from the E. coli harboring scFv phage are isolated and transformed into competent cells of a non-suppressor strain of E. coli in order to express the scFv antibody (Clackson et al. 1991;Hoogenboom et al. 1998).
Production of mAb using the phage display approach offers many benefits. Once a library is made or purchase commercially, the same library can be used to generate many different mAbs. The production does not require the use of animal. Unlike maintaining hybridoma, which requires liquid nitrogen; maintaining and storage of E. coli, phagemid and bacteriophage for future mAb production are easy. The molecule of phage-display mAb is ease to modify; such tagging with other peptides or increase its affinity through an affinity maturation process. The phage-display mAbs penetrate tissue more easily because of its small molecular size (Liu 2014;Nissim et al. 1994;Thompson et al. 1996).
The aim of the present study was to produce mAb recognizing a common antigen for type-A-influenza viruses, the nucleoprotein, using the phage display technology. The mAb is envisaged suitable as the main component of POC test for influenza in animals and human.

Delipidation of H5N1 virion
The purpose of removing lipid from the H5N1 virion is to increase the binding capacity of viral proteins to polystyrene immunotube or plate. Delipidation was carried out according to a previous method (Cham & Knowles 1976). Briefly, virus suspension in PBS (10 7 EID 50 /ml) was mixed with 2 volumes of butanol and di-iso prophyl ether mixture (40% : 60%). After shaking for 60 min, the mixture was centrifuged (1000 x G, 10 min) and the organic phase was discarded. An equal amount of ethyl ether was added to the aqueous phase, shaking and centrifuged as previously. This ethyl-ether treatment was repeated in order to remove residual butanol. Finally, the delipidated virion suspension was aliquoted and freezedried.

Panning
Two immune tubes were coated at 4ºC overnight with NP (2 µg in 1 ml) and delipid H5N1 virus (10 7 in 1 ml carbonate buffer, pH 9.6), respectively. After washing 4 times with PBST (PBS plus 0.05% Tween-20) and blocking with 1% bovine serum albumin (BSA) for 2 hr, 1 ml H1N1 library containing 10 11 pfu in 1 ml PBS was added and incubated for 2 hr at 37ºC. After removing unbound phages by washing 10 times with sterile PBST and twice with PBS, 1 ml chicken-anti-H5N1 serum (diluted 1: 50 in 2YT broth) was added, incubated at 37ºC for 30 min with 250 rpm shaking to release phages bound to NP or H5N1.
The eluted phage suspension was filtered (0.2 µm pore) and added to 9 ml log-phase TG1-E. coli. After incubation stationarily at 37ºC for 30 min, 20 ml 2YT broth containing 2% glucose and 150 µg/ml carbencillin were added and incubated at 37ºC, 250 rpm shaking until mid-log phase (A 600 = 0.5). Helper phage 2.4 x 10 11 pfu were added and incubated stationarily at 37ºC for 30 min. After the incubation, the bacterial cells were pelleted and suspended in 2YT medium containing 100 µg carbencilin/ml and kanamycin 50 µg/ml. After incubation overnight at 37ºC, 250 rpm shaking, the bacterial cells were pelleted; the supernatant was removed and filtered with 0.45-µm filter. A one-fifths volume of PEG-NaCl (20% polyethylene glycol 8000 in 2.5 M NaCl) was added to the supernatant, left at 4ºC for at least 30 min, and then centrifuged (7000 x G, 30 min). The pelleted phages were suspended in PBS containing 20% glycerol, aliquoted and stored at -70ºC until used.
The second round of panning was carried out similarly, except that both collection of phages, i.e phages with NP and those with H5N1 baits in the first panning, were each panned with NP and H5N1 baits. Four different collections of phages were produced: NP-NP, NP-H5N1, H5N1-H5N1 and H5N1-NP, identified with the first and second baits. In the third round of panning, the four collections of phages were panned against NP, and phages bound to NP were eluted with 0.1 M glycine-HCl pH 2. A mid-log phase TG1 E. coli culture was infected with each of the eluted phages and plated on 2YT agar containing 100 µg/ml carbencillin and 2% glucose. Individual colony, 10 -15 colonies per collection of phages, was picked up randomly and grown on 2 ml 2YT medium. At mid-log phase, the scFv phages were rescued with helper phage. The reactivity of scFv-phages was determined with a phage ELISA.

Phage ELISA
A 96-well plate (maxisorp, Nunc Inc.) was coated with 50 ng/well NP at 4ºC overnight. After 2-hr blocking with 2% BSA, the third panned phages were added, approximately 10 11 pfu/ well, and incubated at 37ºC, 250 rpm for 2 hr. After 5 times washings with PBST, rabbit anti M 13 O 7 phage, diluted 1 : 2000 in PBS containing 5% normal chicken serum was added, and incubated at 37ºC, 250 rpm for 2 hr. After 5 times washings with PBST, substrate and ABTS were added and optical density (A 420 ) were measured.
Phagemids were isolated from TG1 E. coli containing the strongest reactivity of phages using a commercial kit (QIAprep mini prep kit, Qiagen). The isolated phagemid were kept at -20ºC until use.

Transformation and clone selection
The competent cells were prepared according to a previous methods (CHUNG et al. 1989). Briefly, HB2151 E. coli, at early log-phase in LB broth (A 600 = 0.35) was pelleted (1000 x G, 10 min). The pellet was suspended in transformation solution (10% polyethylene glycol 8000, 5% DMSO and 50 mM MgCl 2 ), one-tenth of its original volume). The cell suspension was aliquoted in 100 µl tube and kept in -80ºC until used.
For transformation, 1 ng or 0.1 ng phagemid in 1 µl volume was added to the 100 µl competent cells and incubated at 4ºC for 30 min. After adding 0.9 ml LB broth, the suspension was incubated at 37ºC, 250 rpm for 1 hr, then plated in LB agar containing 100 µg/ml carbencillin. After incubation overnight at 37ºC, individual colony, selected randomly, was touched lightly with a toothpick and suspended in 0.5 ml 2YT broth containing 100 µg/ml carbencillin and 2% glucose. For scFv expression, 10 µl of the bacterial suspension is added to fresh 2YT broth containing 100 µg/ml carbencillin and 0.5 % glucose (2YT -carb-glu ) and incubated at 37ºC, 250 rpm. At mid-log phase growth (A 600 = 0.5), 0.1 mM IPTG was added and the cultures were incubated at 30ºC, 250 rpm. Following overnight incubation, the bacterial cells were pelleted, and 100 µL supernatant was added to a 96-well micro-titration plate that had been coated previously with 20 ng NP/ well. After 2 hr incubation, the plate was washed 5 times with PBST, 100 µl anti-human 2Fab (Abcam) diluted 1: 100 was added and incubated 2 hr. After washing 5 times, substrate and ABTS was added, and OD was measured after 15 and 30 minutes. Clones producing the highest OD were selected for further production of NP-specific scFv.

Expression and purification of scFv
Selected transformed E. coli were grown in 2YTcarb-glu to mid-log phase, and incubated overnight at 30ºC after induction with 0.1 mM IPTG. The bacterial cells were pelleted (8000 x G, 4ºC, 20 min) and the supernatant was removed. Purification of scFv was carried out using a nickel column chromatography (HisTrap HP, GE Healthcare life science) on a chromatographic purification system, Acta start (GE Healthcare life science). The eluted proteins from the column were desalted and concentrated using a 10-kDacut-off centriprep (Amicon). The purity was checked with a routine sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS PAGE).

The scFv antibody and reactivity of scFv against nucleoprotein and H5N1 virus
Rabbits were immunized with 1 mg of the purified NP-scFv intramuscularly using Quil A as adjuvant. Booster immunizations were given in a 4 weeks interval. Immune response was monitored using an ELISA with purified scFv as the coating antigen. Two weeks after the last immunization, the rabbits were anaesthetized and bled to death. The sera were aliquoted and stored at -20ºC.
An ELISA and dot blot were used to analyze reactivity of scFv against NP or delipidated H5N1. The plate was coated with NP (20 ng/well) or delipidated H5N1 (≈ 200 EID 50 / well). After blocking with 1 % BSA, purified scFv was added and incubated for 2 hr. After washing 5 times with PBST, the rabbit-anti-scFv at 1: 500 dilution was added and incubated 2hr. After washing 5 times with PBST, substrate and ABTS were added, and optical density was measured after 15 min.
For dot-blot assay, 3 µl suspension containing either 30 ng NP or 100 EID 50 delipidated H5N1 virus were spotted onto a nitrocellulose strip. After blocking with 1% BSA, purified scFv was added and incubated for 2 hr. After washing 5 times with PBST, rabbit-anti-scFv serum at 1: 500 dilution was added and incubated 2hr. After washing 5 times with PBST, the membrane strip was developed in substrate and chromogenic 3'diaminobenzidine (DAB).

RESULTS AND DISCUSSION
The present study successfully isolated scFv monoclonal antibody that recognized recombinant NP from influenza H1N1 and H5N1 influenza virion. The capacity of recognizing both influenza-virus subtypes is attributed to the panning strategy used in this study, which is alternating NP and H5N1 as baits, and elution of bound phages with anti-H5N1 serum.
Delipidation of H5N1 virion, as carried out in this study, was supposed to increase its immobilization on the polystyrene surface of the immunotube and plate. Tight binding of the virion to the immunotube was necessary to withstand intensive (12 times) washings during the panning process. Previously, when NP was used as bait singly or as the only bait, the isolated scFv recognized the NP but not H5N1 virion. As far as we were aware, this panning approach together with the elution with the anti-serum had not been used previously.
After the first panning, the reactivity of phage to NP was still unapparent (Figure 1). The reactivity was similar to that of the control, M13O7 helper phage. After the second panning, either the first with NP and the second with NP or H5N1 virus, or the first with H5N1 virus and the second with NP, however, the reactivity increased impressively. For unknown reason, however, the reactivity of the phage after panning twice with H5N1 virus remained undetected. Reactivity of phage after the third panning on NP is presented on Table 1. The phages, which were rescued from randomly selected colonies of TG1 E. coli, had comparable reactivity. The reactivity, as expressed in ELISA OD's, were about 4 times as higher as that of M13O7 helper phage control.
For the production of soluble anti-scFv antibody, the phagemid from the suppressive TG1 E. coli was isolated and expressed in a suppressive E. coli strain, HB2151. Only in this non-suppressive strain does the amber stop codon (TAG), which placed as the last codon of scFv, function as a proper stop codon.
Considerable amount of phagemid, 7.8 and 3.8 µg, respectively, was isolated from two colonies of TG1-E. coli harboring phage with high reactivity to the NP. When competent HB2151 E. coli cells were transformed with the NP-scFv-phagemid, they produced a high number of colonies on carbencillin-LB-agar plates due to the presence amphicilin-resistant gene in the phagemid. Ninety colonies were randomly selected and the capacity of each colony to expressed scFv recognizing NP is presented in Table 2. One colony (#47) expressing scFv with the highest reactivity was chosen for further scFv purification.
In E. coli proteins are synthesized in the cytoplasm, some of which, however, may be translocated into the periplasmic compartment, and proteins accumulated in the periplasmic compartment may, in turn, leak out into the culture medium (Kipriyanov et al. 1997). The amount of proteins leaking into the medium depend on the primary structure or amino acid sequence of the protein, stability of membrane, composition of the media and duration of incubation ( c lund 2008). In regard to protein purification, purification of expressed protein from the culture media is easier than that from the periplasmic or cytoplasmic spaces In addition to the antibiotic resistance gene, the phagemid used in this study also equipped with the ompA leader sequence, which translocated the newly synthesized scFv from cytoplasm to the periplasmic compartment where the disulphide bonds stabilizing the molecule were formed. Also, to ease protein purification, the phagemid was equipped with a DNA sequence encoding poly histidin as a tag at the Cterminal of the scFv protein.  Expression of anti-NP scFv antibody in the present study revealed that the amount of scFv recovered from culture supernatant was larger than that from periplasmic compartment. Based on SDS PAGE, the major protein eluted from the nickel-ion-affinity chromatography had a molecular weight of about 27 kDa, similar to that of expected scFv (Figure 2). This protein was highly immunogenic, as a high titre against the NP-scFv was obtained after the fifth immunization of rabbits. At 1: 1600 dilutions, the antiserum recognized the scFv coated on micro titre plate at a concentration of 44 ng/ml. At lower dilutions (1 : 200), it recognized at a concentration of 5 ng/ml.
The purified scFv proved to recognized NP and H5N1 both in dot blot and ELISA (Figure 3 and 4). In dot blot experiment, the bindings of scFv to NP and to H5N1 virion were probed by the rabbit anti scFv serum. This experiment also proved the specificity of the antibody, as no signal was observed when the binding was probed with normal or pre-vaccinated serum (Figure 3). Results of this dot blot experiment were in agreement with those of ELISA. The rabbit anti-scFv serum affirmed the binding of purified scFv to NP or to H5N1 virion. The binding scFv to NP or scFv to H5N1 that was probed with the rabbit anti-scFv serum prompted ELISA ODs that were about five times higher than those probed with negative serum. The binding scFv to NP or scFv to H5N1 that was probed with the rabbit anti-scFv serum produced ELISA ODs that were about five times higher than that probed with negative serum. Non-specific bindings between the negative serum with scFv, NP or H5N1 were negligible. For unknown reason, however, there was some non-specific binding between the anti-scFv serum with NP or H5N1 (Figure 4).
Comparable approach to the present study had been used by previous studies in an attempt to isolate scFv recognizing parvalbumin allergen from various species of fish (Bublin et al. 2015). For that purpose, the group carried out three sequential panning on cod, carp and rainbow-trout parvalbumins, respectively.
One of the most common problems in scFv production is the low yield of functional scFv that can be purified from the prokaryotic expression system. The causes of the problem include inhibition of culture growth by toxic effect of the expressed scFv, formation of insoluble aggregates in the periplasmic compartment, and plasmid instability (Mergulhao et al. 2005;Rippmann et al. 1998). To be functional, a scFv required a post-translational processing, that is the formation of disulphide bridges (Montoliu-Gaya et al. 2017;Ramm et al. 1999). Formation of disulphide bonds in prokaryotic cells is taken place only in the periplasmic compartment because only in this compartment the oxidative environment and required enzymes are available (Eser et al. 2009;Makrides 1996).   Although the functional scFv accumulated in the periplasmic space, some of them may leak out into the culture medium (Kipriyanov et al. 1997). In this study, the amount of scFv purified from the culture medium was found to be higher than that from the periplasmic compartment isolated by the cold osmotic shock method (Neu & Heppel 1965). For this reason, isolation of scFv was only carried out from this compartment. In addition, isolation of proteins from the culture medium is easier that that from periplasmic compartment (Kipriyanov et al. 1997).
In the present study, about 1.2 mg of anti-NP-scFv antibody per litre culture was obtained. This yield is considered to be high as compared to previous studies; 0.59 mg/L (Mesgari-Shadi & Sarrafzadeh 2017) or 0.1 mg/L (Kipriyanov et al. 1997). Eukaryotic cells are apparently more efficient than prokaryotic cells in expressing functional scFv. An expression of scFv in mammalian HEK293T cells was reported to obtain a yield of 12.87 to 33.56 mg/L culture (Pipattanaboon et al. 2017). Yeast (Pichia pastoris) expression system was reported to obtain even higher yield, 100 mg/L of pure and functional rabbit anti-rhLIF scFv antibody (Ridder et al. 1995).
Various attempts to increase scFv yields in prokaryotic expression system have been made. Kipriyanov and group reported that addition of sucrose to the medium resulted in the yield of 16.5 mg/L scFv or 80-150 fold higher than that without sucrose addition (Kipriyanov et al. 1997). Similar results were also obtained by others (Mesgari-Shadi & Sarrafzadeh 2017;Sawyer et al. 1994). In our study, however, no increase in the yield was observed when sucrose was added to the culture media. This means that addition of sucrose to the culture does not always increase the functional scFv yield. As a matter of fact, Sina and group reported that addition of sucrose to the culture media even suppressed the expression of scFv (Sina et al. 2015). The cause of the differences in the response to the sucrose is unknown but it might be related to the primary sequence of the scFv (Takkinen et al. 1991). In addition to the primary sequence of the scFv, there are some other factors may affect the expression of scFv in prokaryotic cells including duration, temperature, aeration and gene induction. Each of those factors needs to be optimalisized for every scFv, which is time consuming when carried out in flask cultures. However, a simple optimaliation can be carried out in using a fermentor by sequential simplex optimization method (Intachai et al. 2015).

CONCLUSION
A scFv-monoclonal antibody recognizing nucleoprotein of influenza virus was isolated by panning a commercial-influenza-A-focused-scFv library. Panning with the alternating H1N1 NP and H5N1 virion, and elution with H5N1 antiserum assure the isolated mAb recognizes multiple, if not all, subtype of influenza-A viruses. The anti NP-scFv antibody was purified to homogeneity using an affinity chromatography. Rabbits immunized with this purified NP-scFv produced specific antibody that recognized NP-scFv even in a very low concentration in immunoassays. The immunoassays carried out in this study suggest that the NP-scFv mAb and the rabbit anti NP-scFv can be use in developing point-of-care diagnostic tools for Avian Influenza.
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