{'fraction_non_alphanumeric': 0.03760811117229763, 'fraction_numerical': 0.02912118169155518, 'mean_word_length': 4.754333643988816, 'pattern_counts': {'":': 0, '<': 0, '<?xml version=': 0, '>': 0, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
Synthetic host defense peptide IDR-1002 reduces inflammation in Pseudomonas aeruginosa lung infection

Pseudomonas aeruginosa is a frequent cause of lung infections, particularly in chronic infections in cystic fibrosis patients. However, treatment is challenging due to P. aeruginosa evasion of the host immune system and the rise of antibiotic resistant strains. Host defense peptides (HDPs) and synthetic derivatives called innate defense regulators (IDRs) have shown promise in several infection models as an alternative to antibiotic treatment. Here we tested peptide IDR-1002 against P. aeruginosa in vitro and in vivo. Treatment of bronchial epithelial cells and macrophages with IDR-1002 or in combination with live P. aeruginosa or its LPS led to the reduction of agonist-induced cytokines and chemokines and limited cell killing by live P. aeruginosa. In an in vivo model using P. aeruginosa combined with alginate to mimic a chronic model, IDR-1002 did not reduce the bacterial burden in the lungs, but IDR-1002 mice showed a significant decrease in IL-6 in the lungs and in gross pathology of infection, while histology revealed that IDR-1002 treated mice had reduced alveolar macrophage infiltration around the site of infection and reduced inflammation. Overall, these results indicate that IDR-1002 has promise for combating P. aeruginosa lung infections and their resulting inflammation.


Introduction
P. aeruginosa is commonly found in the environment but rarely causes infection in healthy individuals. However, in immunocompromised patients or when introduced into wounds, burns, or the urinary tract, P. aeruginosa can cause serious infections and even death [1][2][3]. Of particular concern are lung infections caused by P. aeruginosa, such as pneumonia or chronic infections in patients with cystic fibrosis (CF) or chronic obstructive pulmonary disease (COPD). P. aeruginosa is also one of the most frequent causes of nosocomial pneumonia in the ICU [2]. In CF and COPD, while initial infection might be similar to acute infections, over time the P. aeruginosa forms biofilms and undergoes a series of adaptations, including the decreased expression of flagella, thus leading to chronic infections. Over 80% of CF patients acquire P. aeruginosa by their mid-twenties, leading to increased hospitalizations and eventually death from loss of lung function [4,5]. However, the treatment of P. aeruginosa lung infections is hampered by its inherent resistance to antibiotics as well as acquired and adaptive resistance mechanisms [6,7]. Multi-drug resistant strains of P. aeruginosa are on the rise [8], and it has recently been classified as a serious threat by the U.S. Centers for Disease Control and as a critical threat by the World Health Organization due to the rise of multi-drug resistant strains of P. aeruginosa and a lack of new treatment options [9,10]. Therefore, there is a need for alternatives to antibiotics for the treatment of P. aeruginosa lung infections. HDPs, such as the human cathelicidin LL-37, are small, naturally occurring peptides that have shown profound immunomodulatory effects in vivo and under in vivo-like conditions, including a critical role in the host response to microbial infections [11]. These immunomodulatory effects prompt the host immune system to respond to microbial infections, thus limiting the potential development of antimicrobial resistance that occurs from direct targeting of the microbe as well as the negative effects of antibiotics on the host microflora. However, the use of HDPs as exogenous agents has been limited due to toxicity and the relatively expensive process of synthesis for these peptides due to length or the inclusion of more complex chemistry such as disulfide bonds [12,13]. Therefore, synthetic versions have been developed with similar properties but with reduced size, toxicity, and cost [14][15][16]. While a handful of synthetic HDPs have been tested against P. aeruginosa lung infections in vivo, they have mostly been ineffective or shown toxic effects [17][18][19]. Some larger peptides (18-mers or longer) appeared to reduce colony-forming unit (CFU) burden in the lungs, but they were not evaluated for anti-inflammatory or other immunomodulatory effects [20]. Therefore, there is still a need for new peptides for the treatment of P. aeruginosa lung infections.
Synthetic HDPs developed in our laboratory, termed IDRs, are typically only 12 amino acids in length and have been effective in models of cerebral malaria, tuberculosis, and S. aureus-infected wounds and implants, and also have been effective against P. aeruginosa biofilms in vitro [21][22][23][24][25]. However, they have not been tested in vivo against P. aeruginosa infections. One IDR peptide, IDR-1002, has been tested in vivo against S. aureus and E. coli and shown anti-infective therapeutic efficacy [26]. These effects indicated that IDR-1002 might also be beneficial against P. aeruginosa infections.
In the present study, the potential of IDR-1002 as an anti-infective agent against P. aeruginosa lung infections was examined. First, IDR-1002 and the human HDP LL-37 were used in bronchial epithelial cells and macrophages, two key cell populations for the immune response during a lung infection, and their effects on toxicity and cytokine and chemokine release were evaluated alone or in combination with P. aeruginosa or its components. Next, a murine lung model was developed for testing IDR-1002. P. aeruginosa does not normally cause a chronic infection in mice, therefore the bacteria are often embedded in agar or agarose beads and then delivered intratracheally (IT) [27,28]. Alternatively, a model was developed by Hoffmann et al. using a clinical isolate of P. aeruginosa mixed with alginate isolated from the same strain [29][30][31]. Alginate is an exopolysaccharide produced by Pseudomonas that is analogous to the alginate derived from seaweed. While both models give the P. aeruginosa some protection from the host immune system, using an actual biofilm matrix component, alginate, instead of agar better reflects the interactions of the host immune system with the bacteria during a chronic infection. To improve the throughput and make the model more representative of the typical route of lung infection, in this study alginate isolated from seaweed was used along with IN administration of the P. aeruginosa and alginate mixture. We also used the chronic epidemic CF patient isolate LESB58, which is now considered to be the first isolated Liverpool Epidemic Strain, a group of highly virulent strains that have increased antibiotic resistance and are associated with increased morbidity and transmission among CF patients [32][33][34]. LESB58 is a strong biofilm producer, and although it has a flagellum it shows decreased motility [35].
The results showed that IDR-1002 was effective against preventing P. aeruginosa-induced toxicity and could limit the release of pro-inflammatory cytokines. Additionally, while IDR-1002 did not affect the number of lung CFUs in the alginate model, it nevertheless decreased cytokines and damage in the lungs. Overall, the data indicate that IDR peptides could be novel therapeutic or prophylactic agents against P. aeruginosa lung infections.

Mice and ethics statement
C57Bl/6J mice were ordered from Jackson Laboratory or were bred at the Modified Barrier Facility at the University of British Columbia. Female mice were used between 6-8 weeks of age. All experiments were approved by the UBC Animal Care Committee.

Reagents
LL-37 (LLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES-NH 2 ) was purchased from CPC Scientific (Sunnyvale, California, USA) and IDR-1002 (VQRWLIVWRIRK-NH 2 ) was purchased from Kinexus (Vancouver, British Columbia, Canada). Both peptides were synthesized by F-moc chemistry and purified by HPLC to greater than 95% purity. Peptides were stored as desiccated powders at -20˚C, then resuspended in endotoxin-free water for experiments and stored at -20˚C unless otherwise noted. LPS from P. aeruginosa PAO1 (strain H103) was isolated in the laboratory by the Darveau-Hancock method, as previously described [36].

Cell culture
Human bronchial epithelial cells, 16HBE14o-(HBE) cells, were grown in MEM with Earle's salts (catalogue #11090, Thermo Fisher Scientific, Waltham, Massachusetts, USA) and mouse macrophage cells, RAW264.7 (RAW) cells, were grown in DMEM (catalogue #10313, Thermo Fisher Scientific), each with the addition of 10% (v/v) heat-inactivated fetal bovine serum (FBS) and 2 mM L-glutamine (Thermo Fisher Scientific). Cells were maintained at 37˚C with 5% carbon dioxide and passaged by removing media, washing with PBS (Thermo Fisher Scientific), and adding 0.05% trypsin (Thermo Fisher Scientific) to detach cells. Cells were centrifuged, the supernatant was removed, and cells were resuspended and moved into new flasks.
For experiments, HBE cells were passaged into 48-well plates (1 x 10 5 cells/ml, 0.5 ml per well) and allowed to grow for approximately two days to achieve greater than 80% confluency in a monolayer. At approximately 2 h before experiments, medium was removed, cells were washed with PBS, then fresh medium supplemented with L-glutamine and 1% FBS was added. Cells were rested for 2 h, then used for experiments. RAW cells were passaged into 48-well plates (1.5 x 10 5 cells/ml, 0.5 ml per well) and allowed to grow overnight before being used for experiments. For treatments, samples received equivalent volumes of the diluents unless otherwise noted. Supernatants were collected and then stored at -20˚C.

Lactate dehydrogenase assay
Supernatants collected from cell cultures were combined at a 1:1 (v/v) ratio with complete lactate dehydrogenase (LDH) reagent (Roche Diagnostics, Basel, Switzerland). After incubating for 15-25 minutes in the dark, plates were read on a Power Wave X340 plate-reader (Bio-Tek Instruments, Winooski, Vermont, USA). Results were normalized to the control sample (0% toxicity) and a sample treated with 2% (v/v) Triton X-100 (100% toxicity).

Bacterial culture
Bacterial strains P. aeruginosa PA103, LESB58, and PAO1 (strain H103) were streaked onto LB plates from frozen stocks and grown overnight at 37˚C. The following day, individual CFUs were used to make overnight cultures in LB and grown overnight at 37˚C with shaking. Overnight cultures were diluted 1:50 (PA103 and PAO1) or 1:10 (LESB58) and grown to an OD 600 reading of approximately 0.5. Bacteria were then washed with endotoxin-free 0.9% sodium chloride saline, centrifuged, supernatant discarded, and the pellet resuspended in endotoxinfree saline to an OD 600 of 0.5. Bacteria were then diluted to the appropriate concentration based on previous experiments relating OD 600 reading and CFU/ml, and serial dilutions were plated on LB to check the final concentration.
Pseudomonas lung infection model P. aeruginosa PA103 or LESB58 was prepared as described above, except that for the alginate mouse model bacteria were resuspended in 11 mg/ml sodium alginate (Sigma-Aldrich) prepared in endotoxin-free saline. Mice were anesthetized with 2-5% isoflurane and placed on an intubation stand (BrainTree Scientific, Braintree, Massachusetts, USA). IDR-1002, P. aeruginosa, or appropriate controls were instilled dropwise using a micropipette into the left nostril of each mouse. P. aeruginosa was in a 20 μl volume, while peptide was approximately 10-20 μl depending on the weight of the mouse. Isoflurane was periodically applied to keep the mouse at a steady respiratory rate. After instillation, mice were kept on the stand under isoflurane for 2-3 minutes to ensure absorption of the liquid, then they were fully recovered and returned to their cages.
For sample collection, mice were euthanized with 120 mg/kg of IP injected sodium pentobarbital. Blood was collected from the inferior vena cava and allowed to clot, then centrifuged and serum collected for use in ELISAs. For lung homogenates, the lungs were collected and the lobes separated and placed in 300 μl of PBS, then homogenized on a Mini-Beadbeater-96 (BioSpec, Bartlesville, Oklahoma, USA) for 1 minute. The homogenates were filtered (40 μm filter, #431750, Corning) and the filtrate used for plating on LB as described above, then the remaining liquid was stored at -20˚C for use in ELISAs.
For histology, a cannulated needle was used to deliver 4% paraformaldehyde (PFA) to the lungs, then the trachea was tied off with string to prevent leakage and the lungs were placed in 4% PFA. After two days, samples were washed with 70% ethanol. Wax-It Histology Services (Vancouver, British Columbia, Canada) embedded the samples in paraffin, sectioned them, and then stained slides with hematoxylin and eosin (H&E), periodic acid-Schiff (PAS), or Alcian blue. The slides were then evaluated and quantified by a trained pathologist.

ELISAs
Samples were stored at -20˚C until use in ELISAs. Levels of cytokines and chemokines were measured using eBioscience (San Diego, California, USA) antibodies for murine TNF-α and IL-6 and human IL-6. MCP-1 antibodies were from eBioscience or R&D Systems (Minneapolis, Minnesota, USA). KC (CXCL1) antibodies were from Fitzgerald (Acton, Massachusetts, USA) or R&D Systems. Human IL-8 antibodies were from Invitrogen (Waltham, Massachusetts, USA). Standards were purchased from the same sources. The ELISAs were performed by following the manufacturer protocols with optimization of antibody and sample dilutions, washes, and incubation times. They were developed using TMB (eBioscience) and the reaction stopped with 2 N sulfuric acid. The plates were read on a Power Wave X340 plate-reader (Bio-Tek Instruments) and fitted to a 4-parameter standard curve using KC4 software (Bio-Tek Instruments).

Statistical analysis
Data were analyzed using Microsoft Excel 2013 and GraphPad Prism version 7. GraphPad Prism was used to perform an unpaired t-test, one-way ANOVA, or two-way ANOVA as needed. Tukey's and Dunnett's multiple comparisons tests were used when comparing the means of all samples or when comparing to only to a control sample, respectively. A repeated measures two-way ANOVA with Sidak's multiple comparisons test was used to evaluate data taken over multiple time points (i.e., weights and health scores). A value of p 0.05 was considered statistically significant. In HBE cells, IL-6 and IL-8 production showed a dose-dependent increase in response to IDR-1002 or LL-37 alone (Fig 1). HBE cells did not demonstrate changes in IL-6 or IL-8 in response to LPS, but the combinations of IDR-1002 or LL-37 with LPS showed virtually identical results to those with peptide alone, with both peptides showing a dose-dependent increase (data not shown).

IDR
In RAW cells, the levels of pro-inflammatory cytokines TNF-α and IL-6 in the supernatant were below the detectable limit for all doses of IDR-1002 and LL-37 (Fig 2). MCP-1 did not increase in response to either peptide. RAW cells showed significant increases in IL-6, TNF-α, and MCP-1 levels in response to LPS, but when higher doses of IDR-1002 or LL-37 were used in conjunction with LPS, the levels were returned to the baseline seen in the control without LPS. The decreases in cytokine or chemokine concentration were dose-dependent, with higher concentrations of peptide producing greater reductions in the LPS-induced response. However, lower concentrations of LL-37 actually increased the production of cytokines in combination with LPS, with IL-6 showing a significant increase compared to LPS alone.
To further examine the effects of IDR-1002 on LPS exposure, RAW cells were treated with 12.5, 25, or 50 μM IDR-1002 at 24 or 4 hours prior to LPS exposure, 2 hours after LPS exposure, or at the same time as LPS as in the previous experiment, with each time point also having an LPS control and a control without LPS. Samples were collected 24 h after LPS addition and used in ELISAs (Fig 3). Intriguingly, IDR-1002 significantly reduced IL-6, TNF-α, and MCP-1 at all times points of application relative to LPS treatment and at most concentrations, with the exceptions being 12.5 μM IDR-1002 given 24 h prior to LPS for MCP-1 and TNF-α. Even when given 2 h after the addition of LPS, IDR-1002 still reduced IL-6, TNF-α, and MCP-1 in a dose-dependent manner with less than half of the cytokines and chemokine produced relative to that due to LPS alone. This demonstrated that IDR-1002 has the potential to be effective as a prophylactic or therapeutic agent.

IDR-1002 reduced toxicity caused by P. aeruginosa in vitro
While bacterial components such as LPS can cause inflammation, it is also important to examine the effects of living bacteria. After determining the best multiplicity of infection (MOI) and  (Fig 4A and  4B). The combination of LL-37 and PA103 induced a synergistic effect in increasing cytotoxicity as opposed to reducing the toxicity or simply having an additive effect.
In RAW cells, IDR-1002 showed a similar blocking effect for PA103 cytotoxicity, but the combination of PA103 and LL-37 showed an increase in toxicity compared to PA103 alone when the peptide was delivered at -1 h (Fig 4C). However, when LL-37 was delivered at the same time as PA103 in RAW cells, the toxicity of the combination was similar to PA103 alone (Fig 4D).
Cytokine and chemokine levels in the supernatants were also examined. In HBE cells, IL-6 and IL-8 showed slight increases when either peptide or PA103 was added, but the combination of LL-37 and PA103 showed significant increases in both markers (Fig 5). IL-6 and TNF-α were below the detectable limit in RAW cell samples, while MCP-1 concentrations were mostly undetectable and all were below 200 pg/ml, whereas the use of LPS for 24 h induced approximately 10 ng/ml of MCP-1.

IDR-1002 reduced lesion sizes and lung damage in the alginate model
IDR-1002 showed encouraging results prophylactically against P. aeruginosa PA103 in an acute lung model by decreasing CFU burden and inflammatory mediators in the bronchoalveolar lavage fluid (BALF) and serum (S3 Fig). However, the model was not conducive for testing IDR-1002 therapeutically because the mice became sick rapidly (within two hours) and visible signs of infection typically increased over the course of the experiment, making it difficult to humanely anesthetize the mice and deliver IDR-1002 IN even at the early stages of infection. Decreasing the number of bacteria delivered in order to extend the model to multiple days was also ineffective, as the mice simply cleared the bacteria and appeared fully recovered a few hours after infection. Therefore, a lung model was developed based on the work of Hoffmann et al. [29], who used alginate isolated from a clinical strain of P. aeruginosa, then mixed the alginate with the same strain and delivered it IT. In our investigation, we used seaweed alginate to provide consistency and simplicity. It was mixed with the clinical isolate strain P. aeruginosa LESB58, as initial experiments using PA103 did not produce a sustained infection, and the mixture was then delivered IN, which is faster and less invasive than IT. Each mouse received 7 x 10 6 CFU delivered in a 20 μl volume at 0 h. The mice were monitored at 3, 18, 24, and 42 h post-infection and evaluated for relative temperature, appearance of fur and eyes, activity levels, hunching, and respiratory effort. The mice were euthanized on day 2 at approximately 42 h post-infection. The lungs were homogenized and plated for CFUs. As expected, the mice given only alginate did not have P. aeruginosa in their lungs, while the mice given alginate mixed with P. aeruginosa LESB58 had CFUs recovered from their lungs ( Fig  6A). Before homogenization, the lungs of alginate + LESB58 mice also appeared to demonstrate redness around the opening of the trachea into the lungs, which was absent from the mice given only alginate. The alginate + LESB58 mice showed a slight initial worsening of health scores (increased numbers) but recovered by 24 h, although they lost about 6-7% of their initial weight by 18 h after infection and this was maintained throughout the course of the experiment (Fig 6B and 6C). The lung homogenate and serum were used for ELISAs ( Fig  6D-6J). Despite the fact that measurements occurred two days after the initial infection, the alginate + LESB58 mice had significant increases in MCP-1, KC, IL-6, and TNF-α in the lungs and in KC and IL-6 in the serum. TNF-α in the serum was below the detectable limit.
Mice were given 7 x 10 6 CFUs of P. aeruginosa LESB58 in alginate IN at 0 h, then at 18 h post-infection mice were given IDR-1002 (resuspended in endotoxin-free water) at 12 mg/kg IN while vehicle-control infected mice received an equivalent volume of endotoxin-free water IN. Endotoxin-free water was used for the control mice (rather than a scrambled peptide) because peptides demonstrate a broad range of activities and it is difficult, if not impossible, to conclude that a scrambled peptide is truly a negative control with no effects in vivo. Additionally, the use of scrambled peptides relates to the historical concept of distinct HDP and receptor interactions, but it now appears likely that HDPs bind to anionic surfaces rather than discrete binding sites [37,38]. Mice were then euthanized at 42 h and the lungs homogenized and plated for CFUs. The number of recovered CFUs was indistinguishable between the two groups ( Fig 7A). Mice actually showed a slight, but significant, worsening of health scores 6 h after being treated with IDR-1002 (i.e., at the 24 h time point) when compared to the vehiclecontrol mice given endotoxin-free water, although all mice including those given IDR-1002 recovered by 42 h (Fig 7B). The IDR-1002 treated mice also demonstrated an 11% decrease in weight by 42 h, while the control mice only had a 5.5% decrease (Fig 7C). The lung homogenate and serum were also used in ELISAs (Fig 7D-7J). In the IDR-1002 treated mice, IL-6 in the lung homogenate was significantly decreased, while the MCP-1 and TNF-α also trended towards showing decreases.
Vehicle-control mice showed areas of redness near the opening to the trachea (Fig 8). However, the IDR-1002 treated mice either did not show these lesions or they were greatly reduced. The histopathological results were quantified in a blinded fashion by a trained pathologist (Table 1). Interestingly, while the neutrophil infiltration was similar for both LESB58 and LESB58 + IDR-1002 mice, the mice treated with IDR-1002 showed a decrease in alveolar macrophages at the infection sites. The IDR-1002 treated mice also had reductions both in the percentage of inflammation by area and in the number of mice with airway inflammation. No major differences were seen between vehicle control mice and IDR-1002 mice in the PAS or Alcian blue stained samples (S4 Fig).

Discussion
In both in vitro and in vivo models of P. aeruginosa lung infection, IDR-1002 demonstrated an ability to reduce inflammatory mediators such as TNF-α or IL-6 that are associated with microbial infections. Many P. aeruginosa lung infections, such as the chronic infections seen in CF, are highly inflammatory, and so the ability to target both P. aeruginosa and the associated inflammatory response would be highly beneficial. Importantly, IDR-1002 did not demonstrate any toxicity, whereas natural human HDP LL-37 caused toxicity at higher concentrations in vitro. In RAW cells, IDR-1002 did not induce TNF-α or IL-6, while in HBE cells increases in IL-6 were slight when compared to using similar concentrations of LL-37. IDR-1002 also did not show any toxicity in vivo in the acute P. aeruginosa model, and while mice used in the alginate model were slow to recover and had similar or slightly worse health scores soon after IDR-1002 delivery, their health scores had returned to baseline within a few hours.
IDR-1002 also did not increase MCP-1 levels in RAW macrophages. This is in contrast to previous results with human peripheral blood mononuclear cells (PBMCs) and mouse peritoneal lavage cells, where IDR-1002 strongly induced MCP-1 [21,26]. However, in agreement with our results, in mouse bone marrow-derived macrophages MCP-1 mRNA was not significantly upregulated at four hours after IDR-1002 exposure [26]. PBMCs contain T cells, B cells, and monocytes, with small numbers of DCs and natural killer cells, while peritoneal lavage mostly contains B cells, T cells, and naïve macrophages [39]. It is possible that the induction of MCP-1 in PBMCs and peritoneal lavage cells is due to its expression by a small population of cells, such as γδ T cells [40], or that it requires the interactions of particular combinations of cell types. Another factor might be the cellular differentiation state, as RAW cells and BMDMs are differentiated macrophages, whereas PBMCs contain monocytes and peritoneal lavage often contains naïve macrophages. IDR-1002 did however increase a different chemokine, IL-8, in the HBE cells, but since these cells do not express MCP-1, its expression could not be examined. Further research into the induction of MCP-1 by IDR-1002 in specific cell populations would provide insights into the mechanisms of this response.
In RAW cells, P. aeruginosa LPS increased the expression of IL-6, TNF-α, and MCP-1, but in the presence of IDR-1002 these mediators were significantly reduced, even when IDR-1002 was added up to 24 h prior to, or 2 h after, the addition of LPS. LPS uptake is substantially complete within an hour in mouse monocytic cells [41], indicating that IDR-1002 inhibition of LPS responses is likely due to effects on signaling rather than direct interaction with LPS. Consistent with this, it was reported that IDR-1002 added 1 h prior to LPS stimulation in RAW cells limited the translocation of NF-κB to the nucleus by inhibiting the phosphorylation of the NF-κB translocation inhibitor, IκBα, and this mechanism might also be involved in the results seen here [42].
In the presence of live P. aeruginosa in RAW cells, LL-37 did not decrease its toxic effects, and actually produced a slight increase in P. aeruginosa PA103 toxicity when added one hour prior to bacteria. In contrast, IDR-1002 caused a significant reduction in cytotoxicity almost to baseline. In HBE cells, IDR-1002 blocked the cytotoxic effects of PA103, instead showing cytotoxicity levels near those of the control or IDR-1002-treated cells, while LL-37 with PA103 led to a greater than two-fold synergistic increase in cytotoxicity. The combination of LL-37 and PA103 also significantly increased IL-6 and IL-8 expression by nearly three-fold, whereas IDR-1002 showed no synergistic effect. The synergy of LL-37 and P. aeruginosa PAO1 in inducing cell death in both HBE cells and primary airway epithelial cells has been previously reported and found to be caused by the induction of apoptosis [43]. The effects of IDR-1002 in basically eliminating PA103-induced cytotoxicity might have been due in part to direct antimicrobial killing based on published MIC values [44], although tissue culture medium strongly antagonizes direct antimicrobial activity, or could reflect the lack of effect of this peptide on apoptotic cell death.
(J). Data represent mean ± SEM for n = 4 or 16 mice per condition from the combination of two experiments and were analyzed using unpaired t-test with Welch's correction for 6A and 6D-6J, and with a repeated measures two-way ANOVA with Sidak's multiple comparison for 6B and 6C. **: p 0.01, ***: p 0.001, ****: p 0.0001.
https://doi.org/10.1371/journal.pone.0187565.g006 The alginate model showed a sustained infection over two days, with infected mice displaying a slight initial increase in health scores within 3 h but completely recovering by 24 h, although they maintained slight weight losses for 42 h. Importantly, significant increases were still seen in inflammatory cytokines in both the lungs and the serum of infected mice after two days when compared to the mice given only alginate. Additional testing of the model, such as extending it to longer time points, will help confirm the model as a prototype for testing agents in chronic P. aeruginosa lung infections, such as those seen in CF. When therapeutic IDR-1002 was given at 18 h post-infection, no changes were seen in the CFU burden. However, the peptide-treated mice had a significant reduction in IL-6 concentrations in the lung homogenate, and the macroscopically visible lesions were either eliminated or greatly reduced, consistent with the in vitro properties of this peptide. Histology revealed that IDR-1002 treatment reduced alveolar macrophage infiltration compared to the vehicle control infected mice. This was consistent with the anti-inflammatory effect of IN-delivered IDR-1002 in the acute P. aeruginosa lung infection model (S3 Fig), which also led to significantly reduced bacterial counts at the highest peptide dose. In contrast, IP-delivered IDR-1002 in the acute model was TNF-α in lung homogenate (J). Data represent mean ± SEM for n = 9 or 10 mice per condition from the combination of two experiments and were analyzed using unpaired t-test for 7A and 7D-7J, and with a repeated measures two-way ANOVA with Sidak's multiple comparison for 7B and 7C. *: p 0.05.
https://doi.org/10.1371/journal.pone.0187565.g007 completely ineffective, with no changes in the CFU burden or lung appearance and no reduction in cytokines or chemokines in the BALF or serum, possibly indicating that IDR-1002 needs to be delivered near the site of infection in order to exert its effects (S5 Fig). In the alginate model, decreases in lung cytokine concentrations and the differences in the lung pathology indicated that, despite the lack of change in the CFU counts, IDR-1002 still seemed to be promoting an anti-inflammatory immune response against the infection. It is possible that mixing bacteria with alginate reduced the access of phagocytic cells to these bacteria, and given that phagocytes appear to be highly influential in protection by IDR peptides [26,45], this might have impeded the immune response induced by IDR-1002.
In conclusion, this research showed the potential of IDR-1002 as a treatment of P. aeruginosa lung infections. IDR-1002 reduced pro-inflammatory cytokines in vitro and in vivo. As excessive inflammation is a life-threatening feature in chronic P. aeruginosa lung infections, the results are encouraging for the adjunctive use of IDR-1002 against P. aeruginosa infections. Critically, IDR-1002 demonstrated both effectiveness and safety, two features that were limited in previous peptide-based drugs against P. aeruginosa in vivo lung infections [17][18][19][20]. Overall, IDR-1002 shows promise as a new agent to combat P. aeruginosa lung infections.  Mice were given alginate mixed with P. aeruginosa LESB58 (7