{'fraction_non_alphanumeric': 0.044870426503863726, 'fraction_numerical': 0.04922512060794945, 'mean_word_length': 4.695113056163384, 'pattern_counts': {'":': 0, '<': 4, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
Biohydrogenation of 22:6n-3 by Butyrivibrio proteoclasticus P18

Background Rumen microbes metabolize 22:6n-3. However, pathways of 22:6n-3 biohydrogenation and ruminal microbes involved in this process are not known. In this study, we examine the ability of the well-known rumen biohydrogenating bacteria, Butyrivibrio fibrisolvens D1 and Butyrivibrio proteoclasticus P18, to hydrogenate 22:6n-3. Results Butyrivibrio fibrisolvens D1 failed to hydrogenate 22:6n-3 (0.5 to 32 μg/mL) in growth medium containing autoclaved ruminal fluid that either had or had not been centrifuged. Growth of B. fibrisolvens was delayed at the higher 22:6n-3 concentrations; however, total volatile fatty acid production was not affected. Butyrivibrio proteoclasticus P18 hydrogenated 22:6n-3 in growth medium containing autoclaved ruminal fluid that either had or had not been centrifuged. Biohydrogenation only started when volatile fatty acid production or growth of B. proteoclasticus P18 had been initiated, which might suggest that growth or metabolic activity is a prerequisite for the metabolism of 22:6n-3. The amount of 22:6n-3 hydrogenated was quantitatively recovered in several intermediate products eluting on the gas chromatogram between 22:6n-3 and 22:0. Formation of neither 22:0 nor 22:6 conjugated fatty acids was observed during 22:6n-3 metabolism. Extensive metabolism was observed at lower initial concentrations of 22:6n-3 (5, 10 and 20 μg/mL) whereas increasing concentrations of 22:6n-3 (40 and 80 μg/mL) inhibited its metabolism. Stearic acid formation (18:0) from 18:2n-6 by B. proteoclasticus P18 was retarded, but not completely inhibited, in the presence of 22:6n-3 and this effect was dependent on 22:6n-3 concentration. Conclusions For the first time, our study identified ruminal bacteria with the ability to hydrogenate 22:6n-3. The gradual appearance of intermediates indicates that biohydrogenation of 22:6n-3 by B. proteoclasticus P18 occurs by pathways of isomerization and hydrogenation resulting in a variety of unsaturated 22 carbon fatty acids. During the simultaneous presence of 18:2n-6 and 22:6n-3, B. proteoclasticus P18 initiated 22:6n-3 metabolism before converting 18:1 isomers into 18:0.


Background
Docosahexaenoic acid (22:6n-3) is a poly-unsaturated fatty acid (PUFA) that has been associated with physiological benefits in many species, including human and dairy cows. The amount of 22:6n-3 available for absorption in the small intestine can be increased by intake of marine products (e.g. fish oil, marine algae). However, this is not straightforward in ruminants as extensive biohydrogenation in the rumen leaves little 22:6n-3 for absorption.
Biohydrogenation of PUFA is one of the important microbial processes in the rumen that has a major influence on FA composition of meat and milk. It is well documented that ruminal bacteria are responsible for most of the biohydrogenation process in the rumen [1], and it is thought to be a detoxification mechanism as PUFA are more toxic than saturated FA [2]. Metabolism of linoleic (18:2n-6) and linolenic (18:3n-3) acids is well studied in vivo and in vitro and involves an initial isomerization step to yield a FA with a conjugated double bond (a pair of double bonds separated by one single bond). In vitro studies with mixed and pure rumen bacteria helped to construct the detailed biohydrogenation pathways of 18:2n-6 and 18:3n-3, and the identification of bacterial species involved in this process [3][4][5]. However, information on the biohydrogenation of 22:6n-3 is still lacking. Several reports show extensive metabolism of 22:6n-3 in vivo [6,7] and in vitro with mixed rumen cultures [8,9]. However, none of the studies identified bacterial species responsible for its metabolism. Maia et al. [10] investigated PUFA metabolism of 26 predominant rumen bacterial species and found none of them able to metabolize 22:6n-3. Sakurama et al. [11] screened about 100 strains of anaerobic bacteria including some ruminal bacteria and found none of them metabolized 22:6n-3. Pure culture studies focusing on the main rumen hydrogenating bacteria, Butyrivibrio fibrisolvens and Butyrivibrio proteoclasticus also failed to successfully induce 22:6n-3 hydrogenation [10].
The aim of this study was to examine the metabolism of 22:6n-3 by the known biohydrogenating ruminal bacteria, B. fibrisolvens and B. proteoclasticus. To our knowledge, in previous experiments these bacterial species have been exposed to a single concentration of 22:6n-3 (50 μg/mL) which may be toxic for them [10]. We used lower concentrations of 22:6n-3 in our experiments. Additionally, we modified the standard Butyrivibrio growth medium in an attempt to promote biohydrogenation. Experiments 1-5 were conducted using the growth medium containing autoclaved-uncentrifuged rumen fluid and experiments 6−8 were conducted using the growth medium containing autoclaved-centrifuged rumen fluid (Table 1).

22:6n-3 metabolism by B. fibrisolvens D1
Both autoclaved-centrifuged and -uncentrifuged rumen fluid (Exp. 1 and 6), did not result in 22:6n-3 metabolism at any concentration. The effect of various concentrations of 22:6n-3 on growth, fermentation and biohydrogenation ability of B. fibrisolvens D1 (Exp. 6) in media containing 20 % (v/v) autoclaved-centrifuged rumen fluid are summarized in Table 2. No growth was observed till 48 h with the highest concentration of 22:6n-3 (32 μg/mL), whereas a considerably shorter lag phase (4 h) was observed with the same concentration of 18:2n-6 in the same medium. Optical density (OD 600 ) measured at stationary phase was lower (P < 0.05) at the concentration of 16 μg/mL compared to the lower concentrations (0 and 8 μg/mL). Total volatile fatty acid (VFA) production and VFA profile were not affected (P > 0.05) by the 22:6n-3 concentrations. The main fermentation products included butyrate and small amounts of acetate (about 96 % and 4 % of molar concentration of VFA respectively).
Effect of length of incubation period on 22:6n-3 metabolism by B. proteoclasticus P18 The extent of 22:6n-3 metabolism in media containing 50 % (v/v) autoclaved-uncentrifuged rumen fluid at different time points (Exp. 3) is shown in Fig. 1 along with the VFA production at the respective time points. Metabolism of 22:6n-3 (20 μg/mL) initiated after 4 h and 80 % of 22:6n-3 was hydrogenated between 4 h and 12 h of incubation. Accumulation of VFA initiated prior to  (Table 3) and characteristic ion fragments are presented in Table 4. During the early hours of incubation (<8 h), 4 new peaks (i.e. peaks which were not present in the 0 h incubation) appeared ( Fig. 2a: peaks 1-4). Of these, peak 3 was the most abundant and the molecular ion at m/z = 383 and the loss of the terminal methyl group (m/z = 368) confirmed the docosapentaenoic acid structure. The odd numbered ion fragment at m/z = 153 is an indication for the location of a Δ5 double bond [12]. Gaps of 12 amu between m/z = 208 and 220; 248 and 260; 288 and 300 and between 328 and 340 confirmed the location of ethylenic double bonds in position Δ10, Δ13, Δ16 and Δ19 (Table 4). Peak 1 showed the same retention time as 22:5n-3 present in the FAME standard and ion fragments at 168 and 180, 208 and 220, 248 and 260, 288 and 300, and 328 and 340 allowed us to identify this peak as 22:5n-3 [13]. A final docosapentaenoic acid (peak 2) was identified as Δ4, Δ10, Δ13, Δ16, Δ19-22:5 based on the molecular ion at m/z = 383, gaps of 12 amu between m/z = 208 and 220; 248 and 260; 288 and 300 and between 328 and 340 and the double bond in position 4 is defined by the fingerprint ion at m/z = 139 and 152 [14]. One docosatetraenoic acid was identified as Δ10, Δ13, Δ16, Δ19-22:4 (peak 4) based on the molecular ion at m/z = 385 and gaps of 12 amu between m/z = 210 and 222; 250 and 262; 290 and 302 and between 330 and 342. During the further incubation, the abundance of these peaks gradually decreased and were accompanied with the appearance of four 22:3 FA (peaks 5-8: Fig. 2a) and four 22:2 FA (peaks 9-12: Fig. 2a). Peaks 5 and 7 showed a similar mass spectra and were identified as Δ13, Δ16, Δ20-22:3. Ion fragments separated by 12 amu gaps located the double bonds at Δ13, Δ16 and Δ20 with a prominent ion at m/z 332 confirming the presence of allylic bonds at Δ16 and Δ20. Peak 6 showed the same retention time as 22:3n-3 present in the FAME standard and double      Table 4 Characteristic ion fragments recorded during gas-chromatography mass-spectrometry analysis of 4,4-dimethyloxazoline derivatives of newly formed fatty acids during biohydrogenation of 22:6n-3 by Butyrivirbio proteoclasticus. Peak numbers correspond to peaks in Fig   Subsequent biohydrogenation of these products seemed completely inhibited at this concentration. Total VFA production was not affected by the initial concentration of 22:6n-3 except for the highest concentration (80 μg/mL). At the highest initial concentration (80 μg/mL) VFA production after 48 h was higher (P < 0.05) compared to the lower concentrations (16.4 ± 0.5 and 15.1 ± 0.5 μmol/mL respectively), but the VFA profile was not affected (P > 0.05).

Discussion
Butyrivibrio species are a genetically and functionally diverse group of bacteria present in gastrointestinal systems [4,15]. Based on the mechanism of butyrate formation, this group can be classified into two subgroups: vaccenic acid-producing (low butyrate kinase activity) and stearic acid-producing (high butyrate kinase activity). Accordingly, B. fibrisolvens and B. proteoclasticus are belonging to the vaccenic acid-producing and  stearic acid-producing groups respectively [16]. Butyrivibrio fibrisolvens D1 and B. proteoclasticus P18 were chosen for this study as a representative from each group. However, the type species B. fibrisolvens D1 showed high butyrate kinase activity which is atypical to the majority of B. fibrisolvens isolates [17].
Previous studies carried out with B. fibrisolvens and B. proteoclasticus in M2 medium failed to show hydrogenation of 22:6n-3 [2,10]. The reason for this is probably the high concentration of 22:6n-3 used in these studies (50 μg/mL) which may have affected the growth of the bacteria. Wallace et al. [4] showed growth to be a prerequisite for B. proteoclasticus P18 in order to form stearic acid (18:0) from 18:2n-6. If this is also true for 22:6n-3 biohydrogenation, failure to grow when 22:6n-3 is present in previous experiments [2,10] possibly explains the absence of 22:6n-3 biohydrogenation. To reduce the inhibitory effect of 22:6n-3 on growth, the concentration of 22:6n-3 in the medium can be lowered or substances which lower the toxicity of 22:6n-3 should be included in the medium. Harfoot et al. [18] showed that biohydrogenation was stimulated by rumen fluid particles, enabling FA biohydrogenation by ruminal bacteria. Experiments performed in our lab also showed addition of autoclaved-uncentrifuged rumen fluid stimulated the biohydrogenation of 22:6n-3 in mixed cultures of rumen bacteria (Escobar M, Vlaeminck B and Fievez V, unpublished results). Hence, we used autoclaveduncentrifuged rumen fluid to prepare the growth medium. Additionally we used a lower concentration of 22:6n-3 than the concentration reported previously (50 μg/mL) [2,10].
Butyrivibrio fibrisolvens grew at low concentrations of 22:6n-3 without metabolizing it. Maia et al. [2] showed that growth of B. fibrisolvens JW11 was not initiated until all 18:2n-6 was metabolized and converted to VA, such phenomenon was not observed with 22:6n-3. The failure of B. fibrisolvens D1 to metabolize 22:6n-3 in the current experiment might indicate they do not possess the necessary enzymes for 22:6n-3 biohydrogenation. However, further studies are warranted as B. fibrisolvens D1 is atypical to other B. fibrisolvens in general.
In contrast with previous reports [10], we found B. proteoclasticus P18 is able to hydrogenate 22:6n-3. To our knowledge, this is the first report demonstrating 22:6n-3 biohydrogenation by a pure bacterial species.  [4]. Stationary-phase bacteria were reported to be much less active in hydrogenation of 18:2n-6 than growing cells [4,19]. This was explained by a limited supply of reducing equivalents once the energy sources in the medium had been depleted [4] as the conversion of CLA to VA is NADH-dependent [20]. It seems probable that a similar mechanism explains the variation in rate of disappearance of 22:6n-3 during the course of the incubation period. It is however not clear whether growth or activity per se is needed for biohydrogenation, or that the association of disappearance of 22:6n-3, VFA and OD 600 is merely a reflection of changes in the culture closely associated with growth and activity (e.g. biomass production, redox potential). The metabolism of 22:6n-3 resulted in the appearance of numerous compounds eluting during GC analysis between 22:0 and 22:6n-3. It has been speculated before that ruminal hydrogenation of 22:6n-3 yields intermediates with 5 or 6 double bonds, containing at least one trans double bond [1]. The position of the double bonds in the most abundant 22:5 isomer (Δ5, Δ10, Δ13, Δ16, Δ19-22:5) suggest the formation of this intermediate involves izomerisation of the cis-4 double bond and reduction of the cis-7 double bond [21]. Initial izomerisation of the cis-4 double bond of 22:6n-3 would result in the formation of a conjugated product (Δ5, Δ7, Δ10, Δ13, Δ16, Δ19-22:6). However, in the present series of experiments, no accumulation of products eluting in the GC chromatogram with a retention time greater than 22:6n-3 was observed, a region where conjugated isomers of 22:6 would be expected to elute with the polar column used in the present study. The lack of accumulation of a conjugated FA might indicate they are transient products which did not accumulate at the time of sampling. Alternatively, this might also indicate the initial product of 22:6n-3 metabolism is not a conjugated FA. The accumulation of 22:5 isomers produced during the initial stages of 22:6n-3 biohydrogenation was transient, when the initial 22:6n-3 concentration was low, and these isomers were subsequently hydrogenated to more saturated 22:4, 22:3 and 22:2 isomers. The existence of two isomers with identical double bond position (peak 5 and 7 as Δ13, Δ16, Δ20-22:3 and peak 9 and 11 as Δ16, Δ20-22:2) indicates double bonds in the trans configuration must be present. It is unclear to what extent the increases in polyenoic trans fatty acids may offset some of the expected benefits from the enrichment of 22:6n-3 in ruminant derived foods [21].
Butyrivibrio proteoclasticus is the only known ruminal bacterium with the capacity to biohydrogenate 18carbon FA to 18:0. Previous incubations with rumen fluid have established that 22:6n-3 inhibits the complete hydrogenation of 18-carbon unsaturated FA causing trans 18:1 isomers to accumulate [8]. This is thought to be related to the toxic effects of 22:6n-3 on the growth and metabolic activity of B. proteoclasticus [22]. However, in vivo studies have failed to show the relationship between 18:0 flow to the duodenum and B. proteoclasticus DNA [7,23]. Based on the findings of present study we suggest that B. proteoclasticus probably starts to hydrogenate 22:6n-3 before converting 18:1 isomers to 18:0. Biohydrogenation is required to lower toxicity and therefore the reduction of products containing more double bonds are a greater priority which explains the lack of 18:1 reduction at time points where biohydrogenation of 22:6n-3 did occur. These findings possibly explain the lack of relationship of duodenal 18:0 to the duodenum and B. proteoclasticus DNA [7,23].

Microorganisms and cultivation
Butyrivibrio fibrisolvens D1 (DSM 3071) and B. proteoclasticus P18 were selected for this study. Butyrivibrio fibrisolvens D1 was purchased from DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Braunschweig, Germany) and B. proteoclasticus P18 was obtained from the culture collection of the Rowett Institute of Nutrition and Health (University of Aberdeen, Bucksburn, Aberdeen AB21 9SB, UK). Butyrivibrio medium (DSMZ: medium 704) was slightly modified: VFA mixture, haemin and glycerol were omitted from the basic medium and L-cysteine-HCl was used as the only reducing agent (0.5 g/l). The preparation method of rumen fluid and the rumen fluid/buffer ratio were also modified ( Table 1).
Autoclaved-uncentrifuged or -centrifuged rumen fluids were used for the growth media preparation. Rumen fluid was collected from 3 mature wethers, fitted with a ruminal cannula, fed grass hay and a commercial grain concentrate twice a day according to their maintenance requirements. To obtain the centrifuged rumen fluid, rumen fluid collected from cannulated wethers, was filtered through a sieve with a pore size of 1 mm and then fine particles were removed from the filtrate by centrifugation at 10,000 g for 20 min at 4°C. The supernatant was sterilized by autoclaving for 20 min at 121°C and stored frozen at −20°C. The stored rumen fluid was thawed before use and any new precipitates formed were removed by centrifugation at 12,000 g for 15 min at 4°C. For autoclaved-uncentrifuged rumen fluid, rumen fluid collected from cannulated wethers was filtered through a sieve with a pore size of 1 mm and autoclaved (20 min at 121°C), and used without further processing.
In vitro incubations were carried out anaerobically at 39°C under continuous shaking in Hungate-type tubes (16 mm dia., 125 mm long; Bellco Glass, Vineland, NJ, USA) containing 9.5 ml of medium and closed with screw caps fitted with butyl rubber septa (Chemglass Life Sciences, Vineland, NJ, USA), and autoclaved for 20 min at 121°C. Inoculum volumes were 5 % (v/v) of a fresh culture that was grown in medium 704 for 12 h (OD 600 ≈ 1.7). Growth was determined by measuring the culture density at 600 nm (Ultraspec10, Amersham Biosciences corp., Piscataway, NJ, USA). At the end of the experiment the incubations were stopped by placing the tubes in ice water. pH was measured (Hanna instruments, Temse, Belgium) and culture contents were sampled for VFA and long chain FA (LCFA) analysis. This solution was diluted with distilled water to achieve a final 22:6n-3 concentration of 10 mg/mL. The amount of Tween-80 and NaOH in all the tubes was kept the same by using a blank solution (prepared with Tween-80 and NaOH only). The required amount of the FA solution was added before autoclaving individually to each Hungate tube.
Experiments 6-8 were conducted using autoclavedcentrifuged rumen fluid (Table 1). In experiment 6, B. fibrisolvens was grown with different concentrations of 22:6n-3 and growth (culture density) was monitored during the experiment. Lag time for the growth was determined based on the time point at which the increase in OD 600 initiated. Linoleic acid (18:2n-6) was used as the positive control. Treatments were performed in duplicate (analytical replicates) with inoculum from three different culture tubes (biological replicates).
In experiment 7, we saw the disappearance of 22:6n-3 (20 μg/mL) by B. proteoclasticus in the medium containing 20 % (v/v) autoclaved-centrifuged rumen fluid after 24 h incubation. Kinetics of this disappearance was studied in experiment 8 along with the growth of the bacteria by measuring increase in culture density (OD 600 ) at the time of tube withdrawal. Three analytical replicates were used for each treatment.

Analysis and calculation
For VFA analysis, 2 mL of incubation medium were collected and acidified with 200 μL of formic acid which contained the internal standard (10 mg of 2-ethyl butyric acid/mL formic acid). After 15 min centrifugation at 4°C and 22,000 g, supernatant was filtered and an aliquot was transferred into a 1.5 mL glass vial. Samples were stored at 4°C until VFA analysis using gas chromatography (HP 7890A, Agilent Technologies, Diegem, Belgium) equipped with a FID detector and a Supelco Nukol capillary column (30 m × 0.25 mm × 0.25 μm, Sigma-Aldrich, Diegem, Belgium). The temperature program was as follows: 120°C at injection for 0.2 min; increased at 10°C/min until 180°C and remained at this temperature for 3 min; injector temperature: 250°C; detector temperature 255°C. For this temperature program, 0.3 μL was injected with a split/splitless ratio of 25:1 using H 2 as carrier gas at 0.8 mL/min. VFA peaks were identified based on their retention times, compared to external standards (Sigma Aldrich, St Louis, MO).
The remainder of the content in the Hungate tubes after removal of 2 mL for VFA analysis (8 mL/tube) was freeze-dried for LCFA analysis and FA were methylated as described by Vlaeminck et al. [9]. Analysis of the FA methyl esters (FAME) was carried out using a gas chromatograph (HP7890A, Agilent Technologies, Diegem, Belgium) using a SP-2560 column (75 m x 0.18 mm, i.d. x 0.14 μm thickness, Supelco Analytical, Bellefonte, USA) and a flame ionization detector. The temperature program was initially 70°C for 2 min, increasing at 15°C/min to 150°C, followed by a second increase at 1°C/min up to 165°C and holding for 12 min, followed by a third increase at 5°C/min to 210°C, held at 210°C for 20 min, increased at 5°C/min to 220°C and held at 220°C for 15 min. Inlet and detector temperatures were 250 and 255°C, respectively. The split ratio was 50:1. Hydrogen was used as the carrier gas at a flow rate of 1 mL/min. Identities of peaks were determined using mixtures of methyl ester standards (GLC463, Nu-Check-Prep., Inc., Elysian, MN, USA).
Quantification of FA was based on the area of the internal standard and on the conversion of peak areas to the weight of FA by a theoretical response factor for each FA [24,25].
The organic layer was dried with anhydrous sodium sulphate for 1 h, followed by evaporation until dry under nitrogen. The DMOX derivatives were dissolved in hexane.
Identification of the DMOX derivatives of the biohydrogenation intermediates was based on electron impact ionisation spectra obtained by gas chromatography-mass spectrometry (GC-MS), using a gas chromatograph (Trace2D-GC, Thermo Electron Corporation, Waltham, MA, USA) coupled to a quadrupole mass detector (DSQII, Thermo Electron Corporation) under an ionisation voltage of 70 eV, using helium as carrier gas. The ion source and interface temperatures were maintained at 200°C and 250°C, respectively. The column was a SLB 5 ms capillary column (60 m x 0.25 mm, i.d. x 0.25 μm thickness, Supelco Analytical, Bellefonte, USA). The electron impact ionization spectra obtained were used to locate double bonds based on atomic mass unit (amu) distances with an interval of 12 amu between the most intense peaks of clusters of ions containing n and n-1 carbon atoms, being interpreted as cleavage of the double bond between carbon n and n + 1 in the fatty acid moiety.

Statistical analysis
All statistical analysis was performed using SAS version 9.4 (SAS Institute Inc., Cary, NC). A least squares mean ANOVA in the GLM procedure using 22:6n-3 level (Exp. 1, 4, 5 and 6) or incubation time (Exp. 3 and 8) or headspace gas (Exp. 2) as factors was used to test time and treatment effects. The Tukey-Kramer test was performed to assess which treatments differed in case of multiple (> 2) treatments. The differences among means with P < 0.05 were considered to be statistically significant.