{'fraction_non_alphanumeric': 0.03199414660103765, 'fraction_numerical': 0.023679659438605827, 'mean_word_length': 5.022231123573002, 'pattern_counts': {'":': 0, '<': 0, '<?xml version=': 0, '>': 0, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
Novel experimental Pseudomonas aeruginosa lung infection model mimicking long-term host–pathogen interactions in cystic fibrosis

The dominant cause of premature death in patients suffering from cystic fibrosis (CF) is chronic lung infection with Pseudomonas aeruginosa. The chronic lung infection often lasts for decades with just one clone. However, as a result of inflammation, antibiotic treatment and different niches in the lungs, the clone undergoes significant genetic changes, resulting in diversifying geno- and phenotypes. Such an adaptation may generate different host responses. To experimentally reflect the year-long chronic lung infection in CF, groups of BALB/c mice were infected with clonal isolates from different periods (1980, 1988, 1997, 1999 and 2003) of the chronic lung infection of one CF patient using the seaweed alginate embedment model. The results showed that the non-mucoid clones reduced their virulence over time, resulting in faster clearing of the bacteria from the lungs, improved pathology and reduced pulmonary production of macrophage inflammatory protein-2 (MIP-2) and granulocyte colony-stimulating factor (G-CSF). In contrast, the mucoid clones were more virulent and virulence increased with time, resulting in impaired pulmonary clearing of the latest clone, severe inflammation and increased pulmonary MIP-2 and G-CSF production. In conclusion, adaptation of P. aeruginosa in CF is reflected by changed ability to establish lung infection and results in distinct host responses to mucoid and non-mucoid phenotypes.

extracellular polymeric matrix, to mutate to mucoid phenotypes hyperproducing an exopolysaccharide called alginate and to develop resistance to antibiotics by becoming mutators (6)(7)(8). The inflammation induced by the chronic P. aeruginosa lung infection leads to a gradual degradation of the lung tissue due to PMN proteases and reactive oxygen species from the PMNs (6,9,10).
Although the dominant outcome of the lung infection in CF is tissue damage and premature death or lung transplantation, there is a significant effect of the inflammation on P. aeruginosa residing in the lungs (6). The result is a yearlong interplay between the host and the pathogen unless the infecting strain is replaced by a more fit strain, which occasionally is the case (11). Although replacement of a dominant strain can take place, it is believed that CF patients are infected with one clone for several years -often decades (6,11). However, even though the patients are infected with one clone, several different phenotypes are present due to adaptation (6). The general background and consequences of adaptation and diversity have received considerable attention from environmental microbiologists (12,13). Early in the course of disease, intermittent colonization with one fit, often environmental and physiologically adaptable clone takes place. In later stages of infection, genomic adaptation can dominate, e.g. in the case of hypermutators (14)(15)(16)(17).
In the case of P. aeruginosa and CF, adaptation has been demonstrated to be involved already from the initial phases during the interplay between pathogen and epithelia (18), and continue during infection (19,20). This is reflected in approximately 10% larger genome of clinical P. aeruginosa strains as compared with environmental strains and the PAO1 type strain (21). Another example of the adaptation of P. aeruginosa during the 20-30 years of chronic lung infection in CF was demonstrated by Lee et al. (22), who investigated the ability of in vitro biofilm formation of pulsed-field gel electrophoresis (PFGE) identical non-mucoid clinical strains from CF patients. Biofilm formation significantly changed over time, and the finding was that the ability of biofilm formation decreased from the early isolates to the late isolates (22). In addition, changes in the quorum-sensing (QS) status and the production of exoproteases were observed, and the appearance of hypermutable strains seemed to increase with the duration of the lung infection (22). The diversity with different phenotypes and genotypes following the initial phases probably reflects the adaptation to different niches of the lungs and the subsequent higher orders of complexity result in increased fitness of the strain that infected the CF patient (6,16,17). Indeed, the induced inflammation and subsequent tissue destruction may generate more spatially heterogeneous niches with different physiologies (e.g. changed levels of oxygen) for adapting mutators or recombinants (17,23).
Animal models mimicking the adaptation during chronic P. aeruginosa lung infection are pivotal to further improve our understanding of the pathophysiological mechanisms during the persistent infection in CF and related diseases like diffuse panbronchiolitis. However, no known animal model reflects the 20-30 years of bacterial-host interplay observed in CF. No model reflects the fact that clones of P. aeruginosa isolated at the early stages of the chronic infection behave significantly different from the same clones isolated at later or terminal stages of the chronic lung infection thousands of bacterial generations later. Such evolution of the bacterial clones may induce completely different host responses, which again may indicate the need for different treatment strategies.
Based on those observations, we aimed at establishing a new experimental strategy infecting different groups of BALB/c mice with PFGEidentical mucoid and non-mucoid isolates from the same CF patient isolated during different periods of her chronic lung infection for 23 years. The experiments were evaluated by quantitative bacteriology, macroscopic and microscopic pathology, as well as pulmonary cytokine production.

Mice
Female BALB/c mice, 11 weeks of age, were purchased from M&B Laboratory Animals (Ry, Denmark), and given unlimited access to chow and water. Mice were left to acclimatize for 1 week before the experiments were performed, and all the experiments were performed under the guidelines of the National Ministry of Justice.

CF patient
The set of clonal P. aeruginosa strains, on which the present animal model is based, was from a female CF MOSER et al. She has a heterozygote mutation DF508/3128 del4. She has been chronically infected with P. aeruginosa since 1971, and had a high number of precipitating anti-pseudomonas antibodies. However, the isotypic clones included in the present study were cultured in 1980 for the first time. In 2000, the patient underwent a double-lung transplant, but was again chronically infected within a few months with the same isotypic clone. The PFGE patterns are shown in Fig. 1.

Bacterial strains
All CF patients at the Copenhagen CF centre are seen on a monthly basis, and provide a sputum sample for microscopy and culture. Strains from all patients are frozen at À801C on a regular basis. The non-mucoid clonal isolates used in the present study were used in a recently published study (22), and were isolated in 1980 and 1988 (early isolates), and 1997, 1999 and 2003 (late isolates). The mucoid clonal isolates are from the same sputum samples as the non-mucoid clonal isolates from 1988, 1997 and 2003. To maintain consistency in our findings with the clone collection, three non-mucoid PFGE identical isolates from two CF patients, as well as two pairs of early and late isotyped mucoid isolates from two other chronically infected CF patients were included in the study. Infection of mice with these control isolates from different time periods were evaluated by quantitative bacteriology and macroscopic pathology, and mortality was registered. PFGE analysis was performed as described previously (24). Evaluation of similarity was performed as described by Tenover et al. (25).
Colonies of the late non-mucoid (Fig. 3E) and mucoid isolates from 2003 are shown for comparison.

QS
Production of acyl-homoserine lactones (AHL) was detected in the supernatant from overnight bacterial cultures using the AHL-specific reporter strains as described by Hentzer et al. (26).

Challenge procedure
Immobilization of bacteria was performed as described previously (27). Briefly, one colony was added to 100 ml sterile filtered oxbroth, and cultured at 371C for 18 h on a gyratory shaker. The overnight culture was centrifuged at 41C and 4400 g. The supernatant was discarded and the pellet was resuspended in 5 ml sterile serum bouillon [Statens Seruminstitut (SSI), Copenhagen, Denmark]. One millilitre of the bacterial suspension was mixed with 9 ml sterile seaweed alginate suspension (11 mg/ml of 60% guluronic acid protanal 10/60 (Protan, Drammen, Norway) dissolved in 0.9% NaCl). The suspension was placed in a cylindrical reservoir and forced through an 18 G cannula, with a coaxial jet of air blowing on the alginate droplets. The alginate droplets were collected in a solution of 0.1 M CaCl 2 Tris-HCl buffer (0.1 M, pH 7.0). After 1 h of stirring, the alginate beads were washed twice in 0.9% NaCl. The colony-forming units (CFU) were controlled by serial dilution and cultured on a modified Conradi-Drigalski medium (SSI) selective for Gram-negative bacteria. Based on doseresponse experiments, the suspension was adjusted to 10 8 CFU/ml for the non-mucoid isolates and confirmed by colony counts (corresponding to a challenge dose of 4Â10 6 CFU per mouse). At this challenge dose, the early isolates from 1980 or 1988 revealed a significantly higher, but acceptable mortality rate at 20-25% as compared with the late isolates (po0.025). In the study comparing the outcome after infection with mucoid or non-mucoid isolates, no significant differences were observed between the early mucoid isolate and the three non-mucoid isolates (data not shown). However, survival was significantly reduced when mice were infected with either of the late mucoid isolates from 1997 or 2003, because only two mice survived in the 2003 group (po0.005). Therefore, the challenge dose for the mucoid isolates was reduced to 0.8Â10 6 CFU per mouse.
At the time of the challenge, mice were anaesthetized subcutaneously with a 1:1 mixture of etomidate (Jannsen, Birkeroed, Denmark) and midazolam (Roche, Basel, Switzerland) (10 ml/kg body weight), and tracheotomized (28). An intratracheal challenge with 0.04 ml of P. aeruginosa embedded in seaweed alginate beads was performed with a bead-tipped needle. The inoculum was installed in the left lung 11 mm from the penetration site (28).
Pentobarbital (DAK, Copenhagen, Denmark) 2.0 ml/kg body weight was used to sacrifice the animals (28). Mice were sacrificed at day 5, because both the innate and the adaptive immune responses are activated at this time point (own observation).

Macroscopic pathology
Upon sacrifice, macroscopic signs of pathology were noted. A broad estimate of the expansion of the affected areas was registered as a fraction of the referred lung lobe. All estimates were performed blinded.

Histopathology
The lungs were prepared for histopathological examination as described previously (28). Briefly, the affected lung was fixed in a 4% w/v formaldehyde solution (Bie & Berntsen, Copenhagen, Denmark) embedded in paraffin wax and cut into 5-mm-thick sections, followed by haematoxylin and eosin staining. The entire lung slide was scanned at a low magnitude, and from an average evaluation of a minimum of five representative areas at higher magnitude (Â500) the type of lung inflammation was estimated. The inflammatory responses were scored as acute (490% PMNs), chronic [490% mononuclear cells (MN)], both types present, neither dominating (PMN/MN) or no inflammation (NI) (28). The degree of inflammation was scored on a scale from 0 to 31, where 0 means NI, 1 means mild focal inflammation, 11 mean moderate to severe focal inflammation and 111 means severe inflammation to necrosis, or severe inflammation throughout the lung. In addition, the presence of atelectasis or micro-abscesses was noted. The histopathological evaluation was performed blinded.

Peptide nucleic acid (PNA)-fluorescence in situ hybridization (FISH)
To confirm the nature of bacteria-like structures in the alveoles, deparaffinized tissue sections were analysed by FISH using PNA probes. A mixture of a Texas Red-labelled, P. aeruginosa-specific PNA probe and a fluorescein isothiocyanate (FITC)-labelled, universal bacterium PNA probe in a hybridization solution (AdvanDx Inc., Woburn, MA, USA) was added to each section and hybridized in a PNA-FISH Workstation at 551C for 90 min covered by a lid. The slides were washed for 30 min at 551C in Wash Solution (AdvanDx Inc.). Vectashield mounting media with 4 0 ,6-diamidino-2-phenylindole (DAPI) (Vector laboratories, Burlingame, CA, USA) was applied, and a cover slip was added to each slide. Slides were read using a fluorescence microscope equipped with an FITC, a Texas Red and a DAPI filter.

Quantitative bacteriology
Lungs for quantitative bacteriology were prepared as described previously (28). In brief, the lungs were removed aseptically and homogenized in 5 ml of PBS and serial dilutions of the homogenate were plated, incubated for 24 h and the numbers of CFU were determined and presented as log CFU per lung.

Cytokine production
The lung homogenates were centrifuged at 4400 g for 10 min and the supernatants were isolated and kept at -701C until cytokine analysis. The concentrations in the lung homogenates of the PMN mobilizer granulocyte colony-stimulating factor (G-CSF) and the PMN chemoattractant and murine IL-8 analogue macrophage inflammatory protein-2 (MIP-2) were measured by ELISA (R&D, Minneapolis, MN, USA) according to the manufacturer's instructions.

Statistical analysis
The number of mice in each group was calculated to provide a power of 0.80 or higher for continuous data. Statistical calculations were performed using Statview (Abacus Concepts, Berkeley, CA, USA). The w 2 test was used when comparing qualitative variables, and the ANOVA/unpaired t-test was used when comparing quantitative variables. p 0.05 was considered statistically significant. À 1 Production of acyl-homoserine lactones (AHLs) by the mucoid clones (2, 4 and 6) and the non-mucoid clones (1, 3 and 5). Detected in supernatants from overnight bacterial cultures using AHL-specific reporter strains. Presented semiquantitatively from À (no detected production) to 111 (high production). Both the early mucoid and non-mucoid isolates from 1988 produced both quorum sensing signal molecules, whereas only the mucoid intermediate clone from 1997 produced both signal molecules. In contrast the late mucoid isolate from 2003 only produced the C12 signal molecule. Except for the early non-mucoid isolate, the non-mucoid clones did not produce quorum sensing signal molecules. PFGE, pulsed-field gel electrophoresis.

QS
As can be seen from Table 1, the early non-mucoid strain from 1988 produced both AHL, C4 and C12. The same was observed from the early and the intermediate mucoid strains. The late mucoid strain from 2003 produced only the C12 AHL.
The two late non-mucoid isolates were defective in producing both AHL.

Non-mucoid isolates
Significantly higher CFUs were obtained from the groups of mice infected with any of the two early isolates as compared with the three groups infected with one of the late isolates (po0.035; Fig. 2A).

Mucoid isolates
All mice infected with the late 2003 mucoid isolate had bacteria cultured from the lungs at day 5. In contrast, no bacteria were cultured from any mice infected with the early (1988) or the intermediate (1997) mucoid isolate. The difference was statistically significant (po0.0001; Fig. 2C).

Non-mucoid isolates
In infection with the non-mucoid isolates, only atelectasis was seen as a pathologic change. Dissemination of pathology was significantly  increased in the two groups infected with one of the early isolates as compared with any of the three groups infected with one of the late isolates (po0.0015; Fig. 2B). In addition, signs of pathology were significantly increased in the group infected with the latest (2003) isolate as compared with the groups infected with one of other two late (1997 and 1999) isolates (po0.0001).

Mucoid isolates
Almost exclusively mice infected with the late mucoid isolate showed signs of macroscopic pathology. The dissemination of the affected areas was significantly increased as compared with the early (1988) isolate or the intermediate (1997) isolate (po0.0004 and po0.0007, respectively; Fig. 2D). In addition, the findings were severe with haemorrhages, abscesses, adherences and areas of air trapping in some of the mice (Fig.  3D). Mouse lung without any sign of inflammation can be seen in Fig. 3C for comparison.

Non-mucoid isolates
In significantly more mice infected with one of the early 1980 or 1988 isolates, a PMN-involved inflammation was observed as compared with  Table 2). This difference did not reach the level of significance as compared with the 2003 isolate (   )]. In addition, presence of atelectasis or micro-abscesses was noted. The number of mice with a certain type and degree of inflammation is presented. Likewise, the number of mice with atelectasis or micro-abscesses is presented. An inflammation involving PMNs were observed in significantly more mice infected with an early isolate ( Ã po0.05). In addition, a higher degree of inflammation was observed in mice infected with an early isolate, although the difference between 1988 and 2003 did not reach the level of significance ( ÃÃ po0.02 for 1980 and ÃÃÃ po0.0002 for 1988).Mice infected with the late mucoid P. aeruginosa isolate from 2003 had significantly more often a PMN involving inflammation as well as significantly higher degree of inflammation ( ÃÃÃÃ po0.02). PMN, polymorphonuclear neutrophil granulocytes; MN, mononuclear cells; NI, no inflammation; CFU, colony-forming units; HE, haematoxylin and eosin.
In a number of the mice infected with the 2003 mucoid isolate, the biofilm-embedded bacteria and the induced inflammation had spread to the periphery of the lungs, namely the alveoli lining the pleural membrane, in accordance with the observation that the chronic P. aeruginosa lung infection in CF patients is also a disease of the smaller airways (Fig. 3A) (29). In addition, PMNs invading the airway lumen could be seen in ( Fig  3A). To support that it was actually P. aeruginosa that was seen in the peripheral airways of a fraction of mice infected with the late mucoid 2003 isolate, staining with PNA-FISH specific for P. aeruginosa was performed (Fig. 3G). The bacteria-like structures were specifically stained with the PNA-FISH, confirming the origin of the structures. No such staining was seen in areas without bacteria-like structures. Another striking feature was the observation of large, round inflammatory cells or foamy cells in some of the alveoli from mice infected with the 2003 isolate (Fig. 3B). In those areas, bacteria-like structures were not identified.
Comparisons between groups infected with the mucoid and the non-mucoid isolates were not carried out because the infection dose was reduced five times in mice infected with the mucoid isolates. However, it is notable that with this reduced infection dose, the histopathology in the group infected with the 2003 mucoid isolate was the worse of all groups.

Non-mucoid isolates
Although the highest levels of G-CSF were measured in mice infected with the early isolates, this did not reach statistical significance (Fig.  4A). The highest levels of MIP-2 were measured in the lung homogenates from mice infected with one of the early isolates from 1980 or 1988. The MIP-2 levels were significantly increased in the lungs of the 1980 group as compared with the 1997, 1999 and 2003 groups (po0.005; Fig. 4A).

Mucoid isolates
The G-CSF levels were significantly increased in the lung homogenates from mice infected with the late 2003 isolate as compared with mice infected with the 1997 or the 1988 isolate (po0.04 and po0.02, respectively; Fig. 4B). Likewise, the levels of MIP-2 in the lung homogenates from mice infected with the 2003 isolate were approximately 10-100-fold higher than in mice infected with the 1997 or the 1988 isolate (po0.02 and po0.006, respectively; Fig. 4B). No significant differences in either G-CSF or MIP-2 levels in the lung homogenates between mice infected with the 1997 or the 1988 isolates were observed (Fig. 4B).

DISCUSSION
The present serial animal experiments were undertaken with early, intermediate and late isolates of P. aeruginosa, with the same genotype based on identical PFGE patterns, causing chronic lung infection for decades in one CF patient. The reason for this approach was that chronic lung infections in mice cannot be maintained for more than 2-3 weeks. Using this concept, the study revealed differences in pathogenicity between the mucoid and the non-mucoid isolates. In addition, an evolution of virulence was observed. Nonmucoid isolates seemed to reduce their virulence, whereas mucoid isolates increased or at least maintained their virulence. Rodents seem to be naturally resistant to P. aeruginosa lung infections and planktonic growing bacteria are easily cleared from the mice, except when mice are given a lethal infection dose. Therefore, in the majority of animal models of chronic P. aeruginosa lung infection embedded bacteria in either agar, agarose, seaweed or their own native alginate are used (27,28,30). However, even those models have a limited duration of 2-3 weeks (28,30). In other models this problem is overcome by repeated exposure of bacteria; however, mice either succumb to or become resistant to this procedure (31,32). Adding P. aeruginosa to the drinking water resulting in aspiration of bacteria to the lower airways in a fraction of the mice, or installing a plastic tube colonized with P. aeruginosa in a main bronchus, can significantly increase the duration of the infection in mice (33,34). However, these alternatives are still limited to the life span of the mouse at the most extreme, and only investigate one single isolate, often being the sequenced laboratory strain PAO1. None of those models can reflect the 20-30 years of bacterial exposure to host responses and antibiotics, which, from a bacterial perspective, may represent as much as 65 000 generations (35). From a human perspective, this corresponds to 2.5 million years or the times of existence of Homo erectus that preceded H. sapiens.
Indeed, significant adaptations were observed in the present study. No significant difference in the virulence between the non-mucoid and the mucoid early isolates was observed. This corresponds with the observations that CF patients often are colonized recurrently with non-mucoid strains in the lungs before onset of the chronic lung infection (6). The shift to the mucoid phenotype is caused by mutations in the muc genes that function as AlgT repressors (36)(37)(38). Activated PMNs have been shown to be able to cause such mutations (39). Therefore, repeated infections with non-mucoid isolates inducing inflammation to a certain degree may be able to induce mutations resulting in mucoidy, and the two early non-mucoid isolates did induce significant inflammation. A control experiment with similar sets of phenotypic non-mucoid sequential P. aeruginosa from two other CF patients confirmed our findings of highest virulence in the early isolates (data not shown). In agreement, non-mucoid phenotypic sets of P. aeruginosa clones isolated during different time periods of the chronic lung infections in a number of CF patients were analysed for their ability to generate in vitro biofilms, hypermutability, colony morphology, motility, QS status and production of virulence factors (22). The early isolates harboured most of these abilities, and presumably would be the most virulent (25).
In later stages of the chronic lung infection, the differences in virulence between simultaneously isotypic mucoid and non-mucoid isolates became distinct. Whereas the virulence and the ability to establish a chronic lung infection of the non-mucoid isolates seemed to decline, the virulence of the two late mucoid isotypes increased and the infection dose had to be reduced five times. whereas the majority of mice infected with the late 2003 isolate could not eliminate the infection, and severe inflammation was induced. Therefore, although the presented results indicate that only the mucoid 2003 isolate had the ability to generate infection and inflammation, the virulence was gradually increasing from the early mucoid 1988 isolate as demonstrated by infection with a higher infection dose. Furthermore, similar findings of increasing virulence were observed for two other clinical sets of mucoid sequential early and late P. aeruginosa isolates. The sequentially increasing differences in the virulence of mucoid and non-mucoid isolates were best evaluated by the histopathology, especially with the observation of the late mucoid strain generating inflammation and infection in the alveoli, whereas the non-mucoid strains almost exclusively infected more central airways. This phenomenon is interesting because the beads embedding mucoid or non-mucoid isolates are similar in size (median diameter 60 mm) (27) and therefore will be arrested in the larger airways during challenge (40). However, likewise, in the earlier studies from our group, only mucoid strains were capable of proceeding to the smaller airways of the lungs (28,30). Furthermore, in the small, peripheral airways of the lungs, the bacteria generate stronger inflammatory responses because they are in contact with both residing alveolar macrophages and are in close contact with the capillaries, from where the inflammatory cells migrate into the airspace (41). Experimentally, this supports the theory that mucoid strains primarily reside in the peripheral, respiratory zones of the lungs, in contrast to the non-mucoid strains, which probably mainly reside in the larger, conductive airways (6).
The groups of mice with the more severe course of the infection, which were the groups infected with the early non-mucoid strains or the late mucoid strains, also showed the highest production of MIP-2 (a murine IL-8 analogue) and the important PMN mobilizer G-CSF. These observations correspond with the observation in CF patients where IL-8 is considered an important PMN chemoattractant, and G-CSF correlates with poor lung function and induction of a Th2-dominated response (42,43). Whether these clones also induce a Th2-dominating response in mice remains to be investigated. Moreover, the maintained C12 production of the late mucoid isolate is in line with the observation that C12 can function as a chemoattractant, either directly or through induction of IL-8 (44).
A striking new observation during the histopathologic evaluation was the presence of swollen or foamy inflammatory cells located inside the alveoli in a fraction of the mice infected with the late mucoid 2003 isolate. The cause of the swollen cells is unknown, but they could be macrophages with a foamy appearance, indicating lipid phagocytosis due to necrotic PMNs. This phenomenon requires further investigation.
QS has previously been reported to be an important control system of virulence in P. aeruginosa lung infections, but also in extrapulmonary P. aeruginosa infections (45,46). However, in contrast to the early isolates the late and most virulent mucoid strain from 2003 only produced the C12 homoserine lactone, suggesting a QSindependent virulence factor taking over infection control during the year-long adaptation of the chronic lung infection. Because alginate production is independent of QS, this may be the one decisive factor enabling P. aeruginosa to remain in the CF lungs at later stages of the disease (47). In a follow-up study by Lee and colleagues, it was indeed observed that the mucoid strains used in the present study maintained their ability to establish classic in vitro biofilms in the flowchamber system (B. Lee, personal communication). Moreover, previous animal studies have reported mucoidy of P. aeruginosa to be a pivotal virulence factor during lung infections (30,48,49).
Whether the distinct and changing virulence of non-mucoid and mucoid P. aeruginosa isotypes observed in the present study represents a general behaviour for chronic P. aeruginosa lung infections in CF has to be confirmed in future studies involving more isotypic sets of bacteria. However, involving two other sets of nonmucoid and mucoid isotypic P. aeruginosa confirmed our findings supporting the importance of involving the time perspective in animal models of chronic P. aeruginosa lung infections.
Diversification and adaptation has also been reported for diseases and conditions like Helicobacter pylori infections, characterized by year-long colonization of the gastric and duodenal mucosa resulting in ulcers, and with time, complications like cancer. During these periods of colonization, the strains undergo MOSER et al.
r 2009 The Authors Journal Compilation r 2009 APMIS large genetic alterations through mutations and recombinations, resulting in host adaptations, but perhaps also altered virulence (50,51). Likewise, adaptations have been reported in Porphyromonas gingivalis colonizing the oral cavity for years, as well as Streptococcus mutans (52,53). Such intra-strain evolution can probably be demonstrated for other chronic colonizers in a stressful environment with the potential of becoming pathogenic. The present concept may also be applicable to model systems with those pathogens.
In conclusion, here we present a novel animal experimental strategy for investigation of yearlong chronic infections and colonizations. Using this concept, important sequential differences in host responses were observed. Finally, our observations suggest a pivotal role for mucoidy in generating chronic P. aeruginosa lung infection in the peripheral airways of CF patients.