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Computational systems analysis of differential gene expression in brain metastatic breast cancer.

We utilized readily available computational tools (1-5) and published microarray data (6-9) to understand in an unbiased fashion the most distinguishing molecular features of differentially expressed genes in brain metastatic tissues from humans with metastatic breast cancer, and their genomic sites. We present our findings here, which reveal enrichment for function at the Golgi apparatus, an overlap of molecular signatures with development of the lip and the craniofacial structure, and demonstrate that the genomic sites of the most differentially expressed genes in metastasis to the brain in human breast cancer are enriched for binding sites for Barx2 and IKZF1, may be occupied by Aebp2 and the histone lysine methyltransferase KMT2H, and marked at the chromatin at H3K79me2 and H3K4me3.