{'fraction_non_alphanumeric': 0.0366478891069055, 'fraction_numerical': 0.02702702702702703, 'mean_word_length': 5.188797493145319, 'pattern_counts': {'":': 0, '<': 0, '<?xml version=': 0, '>': 1, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 1, 'profanity_word_list.json': 0, 'sexual_word_list.json': 2, 'zh_pornsignals.json': 0}}
Risk Factors for Cervical Precancer and Cancer in HIV-Infected, HPV-Positive Rwandan Women

Background Although cervical cancer is an AIDS-defining condition, infection with human immunodeficiency virus (HIV) may only modestly increase the risk of cervical cancer. There is a paucity of information regarding factors that influence the natural history of human papillomavirus (HPV) in HIV-infected women. We examined factors associated with cervical intraepithelial neoplasia grade 3 or cancer (CIN3+) in Rwandan women infected with both HIV and HPV (HIV+/HPV+). Methods In 2005, 710 HIV+ Rwandan women ≥25 years enrolled in an observational cohort study; 476 (67%) tested HPV+. Each woman provided sociodemographic data, CD4 count, a cervical cytology specimen and cervicovaginal lavage (CVL), which was tested for >40 HPV genotypes by MY09/MY11 PCR assay. Logistic regression models calculated odds ratios (OR) and 95% confidence intervals (CI) of associations of potential risk factors for CIN3+ among HIV+/HPV+ women. Results Of the 476 HIV+/HPV+ women 42 (8.8%) were diagnosed with CIN3+. Factors associated with CIN3+ included ≥7 (vs. 0-2) pregnancies, malarial infection in the previous six months (vs. never), and ≥7 (vs. 0-2) lifetime sexual partners. Compared to women infected by non-HPV16 carcinogenic HPV genotypes, HPV16 infection was positively associated and non-carcinogenic HPV infection was inversely associated with CIN3+. CD4 count was significantly associated with CIN3+ only in analyses of women with non-HPV16 carcinogenic HPV (OR = 0.62 per 100 cells/mm3, CI = 0.40-0.97). Conclusions In this HIV+/HPV+ population, lower CD4 was significantly associated with CIN3+ only in women infected with carcinogenic non-HPV16. We found a trend for higher risk of CIN3+ in HIV+ women reporting recent malarial infection; this association should be investigated in a larger group of HIV+/HPV+ women.


Introduction
Cervical infections by carcinogenic human papillomavirus (HPV) genotypes cause virtually all cervical cancer and its immediate precursor lesion, cervical intraepithelial neoplasia grade 3 (CIN3) [1][2][3]. Exposure to genital HPV is nearly universal in sexually active people but the majority of infections clear within 1-2 years [4][5][6]. Persistence in women of a carcinogenic HPV type (HR-HPV) increases the risk of cervical intraepithelial neoplasia grade 3 (CIN3) and cancer [7]. A significant proportion of CIN3 will invade if not detected and treated [8].
Evidence suggests that secondary factors, or HPV cofactors, influence the progression of HR-HPV infections to CIN3 and cancer (CIN3+), including exogenous factors such as parity, smoking tobacco and possibly oral contraceptive use [9]. Coinfection by human immunodeficiency virus (HIV) may moderately increase the risk of cervical cancer [10], as immunosuppression may compromise the ability of the host to clear the HPV infection. The lack of a more profound impact of HIV on cervical cancer rates may be explained by two findings: 1) the early natural history of HPV16, the HPV genotype most often associated with progression to carcinoma, appears to be minimally affected by the severity of immunosuppression, suggesting it may more effectively escape immune surveillance even in an immunocompetent host [11][12][13]; and 2) increasing severity of immunosuppression only modestly increases the likelihood of HPV persistence [12]. However, there is a paucity of information regarding factors that influence the natural history of HPV in HIV-infected women.
We conducted a cross-sectional analysis of risk factors associated with CIN3 and cancer in a population of HIV-infected Rwandan women. We previously found in this population that HPV prevalence and presence of cytologic abnormalities were inversely associated with CD4 cell counts [13]. We limited the study population to HIV-infected women with prevalent HPV, since HR-HPV infection is required for the development of CIN3. CIN3 was our primary endpoint because CIN3 is the best surrogate for cancer risk and while CIN2 is the clinical threshold for treatment, it is a poorly reproducible diagnosis of cervical precancer [14][15][16][17].

Ethics Statement
Each participant provided written informed consent after viewing a video demonstrating study procedures. The Rwanda National Ethics Committee and the Institutional Review Board of Montefiore Medical Center, Bronx, NY approved the study protocol and the consent process.

Participants
The Rwanda Women's Interassociation Study and Assessment (RWISA) is an observational cohort study of 710 HIV-infected and 226 HIV-uninfected Rwandan women enrolled May-November, 2005. Methods have been previously described in detail [13]. This analysis includes the 476 women co-infected with HIV and HPV (HIV+/HPV+). At study entry, participants provided historical information on sociodemographic characteristics, physical examination was performed, and blood specimens were taken for CD4 cell count, full blood count, and other laboratory testing.
Participants underwent pelvic examinations. To minimize contamination of gynecologic specimens by blood, exfoliated cervical cells (used for HPV DNA testing) were obtained by cervicovaginal lavage (CVL) prior to collection of a cervical cytology specimen, as previously described [13]. Colposcopy was provided to all women with any abnormal cytologic finding including atypical cells of uncertain significance and cervical biopsies were obtained for specific clinical indications: any visible lesion, suspected malignancy, or cytologic interpretation of highgrade squamous intraepithelial lesions (HSIL), atypical squamous cells of uncertain significance with suspicion of HSIL, atypical glandular cells, or cancer.

HPV Testing
HPV testing was performed on CVL specimens taken at the enrollment visit.
In brief, 100 ml of each CVL specimen was mixed (1:1) with a 26 solution of K buffer (containing Proteinase K at 400 g/mL, 2 mM EDTA, 2% Laureth-12, 100 mM Tris, pH 8.5) and incubated at 55uC for 2 hours followed by a further incubation at 95uC for 10 minutes. After the CVL specimens were digested with Proteinase K, 10 mL of each cell digest was taken to detect HPV DNA using the L1 MY09/MY11 modified PCR system with AmpliTaq Gold polymerase as described elsewhere [18]. Amplification products were probed for the presence of any HPV DNA by Southern blot with a radiolabeled generic probe mixture and subsequently typed by dot blot hybridization for HPV 6, 11, 13, 16, 18, 26,

Histopathology
Biopsies and excised tissue were read independently and blindly by pathologists at Montefiore Medical Center in the Bronx, New York or Evanston Hospital in Chicago Illinois, and were categorized as Negative, CIN1, CIN2, CIN3, and cancer. We used the most severe histopathologic diagnosis as the final participant diagnosis. Among the 202 biopsies, 3 were diagnosed as cancer, 39 CIN3, 21 CIN2, and 76 CIN1.

Statistical Analysis
Of the 710 HIV-infected women 476 (67.0%) tested positive for any HPV DNA. Although non-carcinogenic HPV has not been shown to be a cause of cervical cancer, we included those women positive for non-carcinogenic HPV because some HPV genotypes categorized as non-carcinogenic HPV may be borderline carcinogenic [19] and may cause CIN3 (with little chance of invasion) particularly in HIV+ women [20]. We performed analyses on all HPV+ women, women with carcinogenic HPV genotypes and women with carcinogenic HPV genotypes other than HPV16.
Standard contingency table methods, with exact tests and when appropriate Mantel extension trend tests assessed univariate associations of categorical variables with CIN3 and cancer versus ,CIN3. Two-sided P values ,0.05 were considered statistically significant. The associations of ordinally categorized continuous variables with grade of neoplasia were assessed with logistic regression and trend tests. Odds ratios (OR) and 95% confidence intervals (CI) adjusted for variables identified in univariate analyses were calculated using logistic regression. Multivariate logistic regression models were fit using variables that had statistically significant (P#0.05) unadjusted associations with CIN3+ and women that had complete information on these variables: 454 of 476 (95.4%) women positive for any HPV; 303 of 316 (95.9%) positive for carcinogenic HPV; and 241 of 251 (96.0%) women with non-16 carcinogenic HPV. Because of the relationship of CD4 counts with immunosuppression, all models included CD4 counts. We repeated these analyses with the outcome defined as CIN2 or more severe (CIN2+) (n = 63), including 21 women with CIN2, an equivocal precancer diagnosis.
Analyses restricted to (all) carcinogenic HPV genotypes showed significant associations of CIN3+ with $7 pregnancies (vs. 0-2) and HPV16 (vs. non HPV16 carcinogenic genotypes). In analyses restricted to women with non-HPV16 carcinogenic HPV, $7 pregnancies (vs. 0-2) were associated with CIN3+. In both restricted analyses the magnitude of the associations of CIN3+ with 7 or more lifetime sexual partners and recent malarial infection were similar to that found in all HPV+ women, but were not statistically significant, perhaps because of the smaller sample sizes.
Both the magnitude (OR) and strength (p value) of the association of CD4 count with CIN3+ was greatest in the women with non-HPV16 carcinogenic HPV (Table 2)  As in multivariate analysis using CIN3+ as the endpoint, CIN2+ was independently and positively associated with number of pregnancies (OR 5.88, CI 1.95-17.77 for $7 compared to 0-2), number of sexual partners (OR 2.60, CI 1.18-5.73), and inversely associated with non-carcinogenic HPV (OR 0.25, CI 0.10-0.58). Unlike in women with CIN3+, CIN2+ was not significantly associated with harboring HPV16 (OR 1.45, CI 0.68-3.08) or with recent malarial infection (OR 1.46, CI 0.59-3.59) (data shown in Supplemental online tables S1 and S2).

Discussion
In this cross-sectional analysis of cervical histology in HIV+/ HPV+ Rwandan women we found that immunosuppression as measured by CD4 count was significantly associated with CIN3+ only in women who harbored carcinogenic HPV genotypes other than HPV16. We and others have reported that HPV16 prevalence and incidence are not associated with CD4 count [12,13], suggesting that HPV16 may be more able than other HPV genotypes to avoid immune surveillance in immune competent women. Immunosuppression may differentially affect the risk of progression to CIN3 and cancer of non-HPV16 carcinogenic HPV genotypes versus HPV16, perhaps mediated directly through the likelihood of HPV viral persistence. However, we had inadequate numbers (65) of women testing positive for HPV16 to allow direct analysis of the association of CD4 count with CIN3+ in HIV+ women with HPV16 genotype.
Compared to testing positive for non-HPV16 carcinogenic HPV, CIN3+ was inversely associated with testing positive for only non-carcinogenic HPV and positively associated with testing positive for HPV16. Notably, the fraction of women with CIN3+ who tested positive for HPV16 was less than expected (33% in this study versus 50-60% in other studies) and the strength of association and magnitude of the odds ratio for the association of HPV16 with CIN3+ were smaller than anticipated. This is further albeit indirect evidence that the relative effects of HPV16 in the development of cervical cancer may be less enhanced in HIV-infected compared to uninfected women, consistent with our prior report [12]. The other AIDSdefining cancers, Kaposi's Sarcoma and large B-cell lymphoma, have demonstrated dramatically decreased incidence since the advent of effective antiretroviral therapy (ART) [21,22], which reverses much of the immune compromise of HIV infection. However, the HPV-related cancers, invasive cervical cancer and anal carcinoma, have in most reports not decreased in incidence in the era of effective ART [21][22][23]. This may be in part due to the lack of impact of immune suppression with HPV16 natural history, which in most populations causes at least 50% of cervical cancers.
We found that recent malarial infections had a significant positive association with CIN3+ in HIV+/HPV+ women. To our knowledge, this is the first report of any evidence that malarial infections might contribute to the risk of cervical precancer and cancer. The mechanisms by which malarial infections could increase the risk of CIN3+ are unknown, but might include additional challenges to the already compromised immune system of HIV+ women. HIV, HPV and malarial infections are highly prevalent in much of Africa, and any increased risk of CIN3+ associated with malaria could result in a substantial attributable risk. However, given the limited sample size in this analysis, this observation needs to be confirmed in other populations.
Several factors previously identified as associated with cervical precancer and cancer in general populations of women were also identified here in HIV+/HPV+ Rwandan women. We found that multiple pregnancies (7 or more) were associated with increased risk of CIN3+, independent of number of reported sexual partners. High parity has been reported as a risk factor for cancer in populations of unknown HIV serostatus [9]; the mechanism by which parity increases the risk is unknown but may be related to endogenous hormones causing further eversion of the squamocolumnar junction and/or tissue damage and inflammation resulting from birthing. A higher number of sexual partners was also associated with CIN3+, perhaps reflecting greater likelihood of multiple HPV exposures and thus stochastically to greater opportunity for HPV persistence and progression to CIN3+.
Our study has several limitations. It is a cross-sectional analysis and temporal or causal relationships cannot be inferred. The lack of follow-up does not allow observation of progression with specific HPV types. An additional limitation of this study is that HPV+ women without clinical indication of abnormal cytology or visual lesions were not colposcoped and therefore not biopsied. Thus visually unapparent, HPV+ high-grade lesions could have been missed [24], resulting in verification bias. We expect that this may have muted the strength of association by misclassifying some cases of CIN3+ as controls. Potential misclassification of women as HPV+ may have resulted from the use of CVL rather than tissue to determine HPV infection, thus eliminating from the population women who were in fact HPV infected. It may also have led to over-representation of non-carcinogenic HPV genotypes that preferentially infect the vagina [25,26]. Further, cross-sectional detection of HPV is only a proxy for lifetime level of exposure. The smaller magnitude of the association of CIN3+ with CD4 count may not have been sufficient to achieve statistical significance because of the small number of women with HPV16. We also could not distinguish prevalent from incident infection. This may lead to underestimating the association of HR-HPV with CIN3 and cancer since prevalent infections represent a mixture of incident and persisting infections, the latter of which are on the causal pathway to cervical precancer and cancer.
In conclusion, we found that CIN3+ was inversely associated with CD4 cell count in HIV+ women co-infected with non-HPV16 carcinogenic HPV. The implication of these data is that a greater proportion of cervical precancer and cancer may be attributable to carcinogenic HPV genotypes other than HPV16 in HIV+ women compared to HIV-negative women but larger studies are needed to evaluate this directly. We also found some evidence that malarial infections may increase the risk of CIN3+; this warrants confirmation in larger population-based studies.