{'fraction_non_alphanumeric': 0.030879849942686444, 'fraction_numerical': 0.013651047275000869, 'mean_word_length': 5.002919099249374, 'pattern_counts': {'":': 0, '<': 1, '<?xml version=': 0, '>': 1, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
Size-Dependent Secretory Protein Reflux into the Cytosol in Association with Acute Endoplasmic Reticulum Stress

Once secretory proteins have been targeted to the endoplasmic reticulum (ER), the proteins typically remain partitioned from the cytosol. If the secretory proteins misfold, they can be unfolded and retrotranslocated into the cytosol for destruction by the proteasome by ER-associated protein Degradation (ERAD). Here, we report that correctly folded and targeted luminal ER fluorescent protein reporters accumulate in the cytosol during acute misfolded secretory protein stress in yeast. Photoactivation fluorescence microscopy experiments reveal that luminal reporters already localized to the ER relocalize to the cytosol, even in the absence of essential ERAD machinery. We named this process “ER reflux.” Reflux appears to be regulated in a size-dependent manner for reporters. Interestingly, prior heat shock stress also prevents ER stress-induced reflux. Together, our findings establish a new ER stress-regulated pathway for relocalization of small luminal secretory proteins into the cytosol, distinct from the ERAD and pre-emptive quality control pathways.


INTRODUCTION
The standard model of secretory protein localization in eukaryotes holds that proteins are translated in the cytosol and then trafficked to and inserted into the endoplasmic reticulum (ER) membrane or translocated into the ER lumen in co-and post-translational processes (1,2). Partitioning of secretory proteins from the cytosol into the ER ensures that secretory proteins fold in the unique ER environment, interact with other partner secretory proteins, and, if appropriate, get secreted out of the ER to other organelles of the secretory pathway or into the extracellular milieu. Secretory proteins that fail to correctly fold can be retrotranslocated from the ER lumen or ER membrane back into the cytosol followed by proteasome mediated destruction in a process termed ER associated degradation or (ERAD) (3)(4)(5)(6)(7). Furthermore, some secretory proteins fail to enter the ER due to inefficiencies in the targeting process or sequestration of translocation factors (8)(9)(10)(11)(12).
More recently, the Walter group described a condition in which yeast cells impaired in their ability to downregulate the Unfolded Protein Response (UPR) exhibit partial cytosolic localization of a small non-native ER reporter protein, eroGFP (13). The basis of this phenotype is unclear, though the Walter group suggested the cytosolic pool of protein might result from a translocation defect potentially unique to eroGFP, as they reported no altered localization for the resident luminal ER chaperone Kar2p under comparable conditions (13. As our lab performs live cell imaging studies of fluorescent protein-tagged reporters and faithful interrogation of the ER requires that the reporter robustly localizes to the ER, we sought to better understand this phenomenon. Using several reporters with different types of signal peptides, sequences, and sizes, we found that the stress-induced cytosolic pool of accumulation of sfGFP and other small fluorescent protein (FP) reporters was unrelated to translocation defects. Instead, we uncovered a novel pathway, distinct from ERAD, for the movement of correctly folded soluble ER proteins back to the cytoplasm.

Acute ER stress leads to accumulation of ER-GFP in the cytosol.
Our lab has a long standing interest in environmental reporters in the ER. A fundamental requirement for ER reporters and biosensors is that the proteins must actually localize inside the ER lumen to accurately report on the ER luminal environment. Localization to the ER lumen is achieved typically by attaching targeting (signal peptide) and retrieval/retention (-HDEL) sequences to the reporter. Curiously, we came across a report that described a luminal ER reporter that could be found in the cytosol under ER stress-related conditions. In the Rubio et al. study (13), significant cytosolic localization of a redox reporter protein eroGFP (which contained canonical ER-targeting and retrieval motifs) (14) was observed in mutant yeast cells with a mutated Ire1 (ire1 (D797N,K799N). Ire1 is the misfolded ER protein sensor and activator of the ER stress pathway, the Unfolded Protein Response (UPR) (15). The Ire1 mutant exhibited impaired attenuation of kinase activity following removal of a misfolded secretory protein stress (DTT). Relevant to our study, cytosol-localized eroGFP was also observed in the absence of application of DTT, which led to the suggestion that these cells had a constitutive translocation defect for secretory proteins. In the following study, we sought to better characterize this phenotype, determine whether it occurred for other ER stresses and reporters, and then attempted to modify ER reporters to improve their ER retention and localization during ER stress.
Our first goal was to determine whether ER misfolded protein stresses led to cytosolic localization of FP reporters. In Fig. 1 A, we observed that sfGFP targeted to the ER with a Kar2 signal sequence and COOH-terminal HDEL ER localization motif (16) localized robustly to the nuclear envelope and peripheral ER in unstressed yeast. Acute treatment with DTT led to accumulation of ER-sfGFP in the cytosol within 30 min of treatment and cytosolic localization became more pronounced with longer treatment times. Similar results were observed with tunicamycin (Tm) a disruptor of GlcNAc phosphotransferase that impairs N-linked glycosylation of secretory proteins. Tm treatment took longer to exhibit the cytosolic accumulation and this is consistent with a delay in impaired N-linked glycosylation due to the need to first deplete existing stores of dolicholbound N-acetylglucosamine derivatives. Cytosolic accumulation was also observed with an FP with a distinct primary sequence and spectral profile, mCherry (17) (Fig. 1 B). Our results suggested that visible accumulation of cytosolic ER-sfGFP depends on acute ERstress. In fact, cytosolic accumulation does not require the UPR pathway. Yeast deleted for either of the two key UPR effectors, Ire1 or Hac1, still accumulate cytosolic ER-sfGFP with acute misfolded secretory protein stress ( Fig. 1 C).
As a working hypothesis, we speculated that ER stress was impairing efficiency of translocation of nascent proteins into the ER. Different signal sequences (SSs) translocate with distinct efficiencies during homeostasis and stress (8,9). Therefore, we tested whether the choice of SS affected localization of ER-sfGFP during stress. We tried six different SSs (see Table 1), including SSs of proteins that translocate co-translationally (Dap2), posttranslationally (CPY, Pdi1) or both (Kar2) (18). The mechanism of Scj1 translocation is unknown. Two different lengths of mature domains of the proteins immediately following the SS were also included (+3 or +10) because Levine et al. reported that including a part of the mature domain of the protein increased translocation efficiency of reporters during unstressed conditions (8). We found that some SSs, especially Pdi1 and CPY, localized ER-sfGFP less well to the ER, even under unstressed conditions. However, all of the constructs localized to the cytosol after 2 h of Tm stress (Fig. 2 A).
Another consideration was that the ER-sfGFP constructs were expressed from multicopy plasmids with a constitutive robust promoter. Perhaps high ER-sfGFP expression overwhelms the translocation machinery during acute ER stress? To test this hypothesis, we decreased expression of ER-sfGFP using a weaker TEF promoter (19,20). However, Tm still induced cytosolic accumulation of the ER reporter (Fig. 2 B).
We have previously tagged endogenous full length ER-chaperones with sfGFP (16) and did not notice significant cytosolic accumulation during acute ER stress. We decided to test other full length protein fusions for localization. Additional fusions to endogenous genes were made by homologous recombination. In unstressed cells, ER localization was robust (Fig. 2C). Following Tm treatment, we observed a substantial increase in fluorescence intensity, consistent with upregulation of the UPR targets Kar2, Scj1, and Ero1 (21). However, no significant cytosolic accumulation was apparent with stress ( Fig.  2 C). We noted that the position of sfGFP in the fusions was at the end of relatively large proteins, raising the possibility that the translocation machinery might interact more robustly with the sequences of native ER proteins and enhance translocation efficiency during ER stress. Possibly, in these fusions, sfGFP might not engage the translocation machinery until after hundreds of amino acids already had been translocated and folded. In contrast, the sfGFP in the ER-sfGFP reporter would engage the translocation machinery immediately after the SS. As GFP was originally a cytosolic protein from jellyfish (22), it is possible that GFP lacks key protein sequences required for ER entry during stress. To test this hypothesis, we engineered sfGFP between the Kar2 SS and the mature domain of the robustly ER-localized resident ER protein Ero1. During Tm treatment, ER localization of the engineered construct was at least as robust as with the COOH-tagged endogenous Ero1-sfGFP (Fig. 2C). Therefore, the presence of sfGFP on a resident ER protein or immediately after the SS did not, in itself impact cytosolic localization during stress. Taken together, two different ER-targeted FPs fail to correctly localize to the ER during acute stress, while tagged resident ER proteins appear to be unaffected in their localization during ER stress.
Next, we asked whether the cytosolic pool of ER-sfGFP resulted from a translocation defect, as had been previously suggested. During translocation, many ER SSs are cleaved and this includes the Kar2 SS (23). Therefore, we investigated whether the Kar2 SS of ER-sfGFP was cleaved or uncleaved in stressed cells. Using a 12% tricine gel with sufficient resolution, we compared the sizes of two ER-sfGFP reporters relative to an unprocessed cytosolic sfGFP-HDEL in unstressed and stressed cells. One ER-sfGFP contained the cleavable Kar2 SS replaced with the ER-targeting uncleaved Dap2 signal anchor (48 aa or ~5 kDa) that is similar in size to the uncleaved Kar2 SS+3 (45 aa) (Fig. 3  A). In stressed and unstressed conditions, ER-sfGFP migrates much faster than the Dap2 SS ER-sfGFP confirming that the Kar2 SS must be cleaved, consistent with trafficking to the translocon and cleavage by signal peptidase. In contrast, ER-sfGFP migrates slightly slower than the unmodified cytosolic sfGFP, which should be 8 amino acids (aa) shorter (~1 kDa). The results of the immunoblot argue that ER-sfGFP must be translocated to be cleaved during ER stress before then accumulating in the cytosol. This result raised the possibility that ER-sfGFP might completely translocate into the ER and then be retrotranslocated back into the cytosol, potentially by the ER associated degradation (ERAD) pathway (3,5). We tested this hypothesis using two approaches. First, we exploited the power of photoactivatable proteins that can be permanently optically highlighted by laser light converting the protein from a green to a spectrally distinct red species. Using yeast codon optimized mEos3.2 (yemEos3.2) (24), we demonstrated that the ER-targeted FP can be robustly converted from green to red in the yeast ER (Fig. 3 B). Surprisingly, Tm treatment of cells with photoconverted ER-mEos3.2 revealed that initially ER-localized reporter was relocalizing to the cytosol during stress (Fig. 3 C). Thus, some form of ERAD could potentially move the ER reporters from the ER lumen to the cytosol. This interpretation was problematic.
The first concern was whether the reporter was incorrectly folded. The standard model of ERAD-L, the pathway by which luminal proteins are recognized and retrotranslocated to the cytoplasm by the ERAD machinery, holds that the luminal target proteins are misfolded and recognized by ER chaperones, such as Kar2 or BiP (in metazoans) or BiP-associated J protein co-factors (25). Given that the FP reporters were fluorescent in the ER argues that the FPs must have first folded into a beta barrel, which is essential to fluorophore formation (26). Therefore, to be an ERAD target, the ER FP reporters must be somehow recognized as either unfolded or might somehow be unfolded directly by chaperones. This latter model has some precedence for some folded viral proteins and bacterial toxins that ER chaperones have been observed to engage and apparently unfold (27). We will return to this question in Figure 4.
The second concern is that most ERAD-L clients are destroyed by the proteasome and do not refold in the cytosol (5). The retrotranslocation of luminal proteins into the cytoplasm is coupled to ubiquitination and subsequent targeting to the proteasome for degradation (28). Bacterial toxins retrotranslocated by ERAD-L, the form of ERAD that recognizes and retrotranslocates soluble secretory proteins, appear to escape destruction in part by a low lysine content, which decreases opportunities for ubiquitination (27). FPs contain multiple lysines (20 out of 239 residues in sfGFP, for example) and are susceptible to proteasome degradation when FPs are fused to misfolded proteins (29). Taken together, either FPs are retrotranslocated to the cytoplasm by an ERAD mechanism similar to those utilized by viruses and bacterial toxins or ERAD is not the mechanism.
The ERAD-L pathway requires the membrane protein Hrd1, which is hypothesized to form a channel from the ER lumen to the cytosol (28). Deletion of hrd1 disrupts ERAD-L (30, 31), but did not prevent relocalization of ER-sfGFP ( Fig. 3 D) or photoactivated ER-yemEos3.2 ( Fig. 3 E) during Tm treatment. Together, these experiments argue that ER-sfGFP enters the ER, undergoes SS cleavage and correct folding, and then is retrotranslocated by a mechanism that appears to be distinct from ERAD-L. Therefore, we have termed this phenomenon "ER reflux."

A link between ER reflux and Heat
Shock. An important question is whether ER reflux can be stimulated by other acute misfolded protein stresses. We examined whether heat shock can trigger ER reflux and observed no obvious cytosolic accumulation of ER-sfGFP even after 4 h of incubating cells at a stressful 40°C (Fig. S1 A). We also tested whether heat shock might exacerbate or accelerate ER reflux and found the opposite. Instead, cells treated with Tm and grown at 40°C exhibited protection against Tm-induced ER reflux ( Fig. S1 A)(32). The heat shock response up regulates expression of 165 genes and it is unclear which specific proteins are implicated in ER reflux (33).

Engineering an ER reporter resistant to ER reflux.
To enable study the ER environment during acute ER stress, we sought to determine how ER reflux might be circumvented to maintain localization of reporters inside the ER. We considered the results in Figure 2 with the various reporters and the ability of tagged endogenous ER proteins to remain in the ER during acute stress. We noted that fusions to full-length reporters remained ER localized, which suggested the ER proteins might contain retention information or that retention might be due to size. All of the fusions were significantly larger molecules than GFP alone, ~5 nm (34). We chose to test the latter hypothesis and doubled the size of our reporter by making a tandem dimer (td) fusion. Consistent with the size-dependent hypothesis, the new ER-tdsfGFP exhibited robust ER localization during acute ER stress with Tm or DTT ( Fig.  4 A and B). The larger tdsfGFP also improved ER localization in unstressed cells when the Kar2 SS was replaced with the less robustly ER-localized Pdi1 SS (Fig. S2 A and B).
We were curious whether the bulky size of the complete additional GFP b-barrel was necessary to block ER reflux or whether a shorter truncated peptide would be sufficient to confer resistance to ER reflux. Treatment with Tm led to significant cytosolic accumulation of Kar2 SS ER-sfGFP fused to the first 16 aa of sfGFP at either the COOH terminus of sfGFP or in between the cleaved SS and fused to the NH2 start of the mature domain of Kar2 (Fig. 4 C). Surprisingly, we found that addition of a peptide of 26 aa or more of the sfGFP sequence was sufficient to prevent ER reflux and maintained ER localization regardless of whether the peptide was placed before the mature domain of Kar2 or at the COOH-terminus of the full length sfGFP (Fig. 4 C). ER localization was comparable to ER-tdsfGFP. Given the lack of a positional requirement and the fact that jellyfish GFP is a cytosolic protein, we hypothesized that only the size of the peptide, not the sequence was important for protection. To test this, we inserted a 24mer consisting of GS12 between the SS and the mature sfGFP. This short peptide proved sufficient to protect against ER reflux of ER-sfGFP (Fig. 4 D). Finally, we confirmed that pre-existing protein was retained in the ER by adding the SS+24 aa linker to yemEos3.2 and stressing cells labeled with photoconverted protein (Fig. S2 C). Thus, a short peptide in cis can maintain ER-sfGFP localization during acute misfolded protein stress. This should prove extremely helpful for monitoring ER morphology and retaining biosensors in the ER during acute misfolded protein stress conditions. One important parameter for assays of changes in the organization of the ER lumen is viscosity or crowdedness. This parameter can be measured with Fluorescence Recovery after Photobleaching (FRAP) and an inert reporter, such as sfGFP (35, 36). The need to increase the size of ER-GFP to maintain ER localization made it unclear if reporter mobility would be significantly altered by the increased size. For, ER-tdsfGFP, we predicted that linking two sfGFP molecules together (which should result in a relatively large ~10 nm protein) would likely exhibit low mobility. We compared the mobilities of ER-tdsfGFP and ER-sfGFP-(GS)12 reporters in environmental viscosity FRAP assays. In a cell, ER-sfGFP diffuses at 2.3 µm 2 /s ( Figure 5). The Stokes-Einstein equation predicts that doubling the size of ER-sfGFP should decrease the diffusion coefficient, D, by one half (37). In contrast, ER-tdsfGFP exhibited an extremely low D value of 0.5 µm 2 /s or one fifth of ER-sfGFP. This low value could arise due to an unanticipated interaction with a resident ER protein or more likely due to the relative narrowness of the yeast ER lumen (~10-76 nm with a mean diameter of 37.9 nm)(38). Regardless, the low starting D value results in a narrow dynamic range for using the reporter to detect changes in ER viscosity. In contrast, the much shorter construct, SS-(GS)12-sfGFP-pep, exhibited indistinguishable diffusion properties relative to ER-sfGFP ( Figure 6B). Thus, addition of a short peptide is sufficient to maintain localization and functionality of FP reporters and biosensors in the yeast ER.

DISCUSSION
In this study, we describe a novel phenomenon in which a small soluble ER-localized protein is expelled from the ER lumen during the acute stressful accumulation of misfolded secretory proteins. Our photoactivation experiments convincingly distinguish this process from some form of failed translocation of nascent secretory proteins. The hrd1D mutant results strongly suggest ER reflux is distinct from standard models of ERAD. Equally importantly, ER reflux moves a correctly folded protein from the ER to the cytosol and where the protein is also functionally folded. We can draw this conclusion because FPs must form the elaborate b-barrel structure to form the fluorophore and for fluorescence to occur (39). The result with mEos3.2 follows a folded FP in the ER lumen that is converted and then the converted fluorescent form appears in the cytosol. Currently, we cannot rule out the possibility that the protein unfolds to move from the ER lumen to the cytosol and then refolds. However, we consider this possibility unlikely because of our findings on the effect of size or protein primary sequence length. It is not difficult to envision a model in which ER reflux machinery could sort proteins by globular size (e.g. hydrodynamic radius), it's less obvious why or how the cell would distinguish unfolded proteins that differ in length by 10 amino acids.
ER reflux is triggered by acute pharmacologic stresses that induce global misfolding of secretory proteins, but not a cytosolic stress, such as heat shock. Yet, neither an ERAD-L deletion mutant, hrd1D (Fig. 3 D), nor deletion of the key UPR pathway components Ire1p or Hac1p appear to cause or prevent ER reflux (Fig. 1 C), respectively. Together, these observations suggest that yeast possess a novel mechanism for detecting and responding to acute accumulation of misfolded secretory proteins in the ER. However, the release of correctly folded proteins below a molecular size cutoff suggests that ER reflux may not necessarily be a mechanism for clearing the ER lumen of misfolded proteins to restore homeostasis. Most relatively small ER proteins in yeast are integral membrane proteins, which do not appear to be subject to the ER reflux pathway (Feroz Papa and Aeid Igbaria, personal communication).
The role of ER reflux remains unclear. Reflux could function to remove otherwise correctly folded and functional small secretory proteins and consequently block fundamental yeast processes, including mating/conjugation (i.e. Mf(alpha)2 and Mf(alpha)1)(also see Table 2). A curious possibility that we cannot currently rule out is that FPs in yeast could become targets of ER chaperones during conditions of misfolded secretory protein stress. We do not observe this in mammalian cells by FRAP analysis (29, 40, 41). We have not tested this possibility by co-IP in actively stressed cells as the previous experiments we performed were in homeostatic cells. The FRAP experiments are further confounded by the impact of chaperone binding of FPs-namely that the FPs would likely unfold, become dark, and be undetectable by fluorescence microscopy. One potential mechanism to drive interactions between FPs and chaperones, such as Kar2p/BiP, is the dramatic UPR induced upregulation of Kar2p levels. At steady state, a significant fraction of Kar2p/BiP is occupied (16,41,42). Increased levels of BiP/Kar2p could increase the probability of interactions with FPs that might have low affinity chaperone binding sites. However, this model seems unlikely, because we still observe ER reflux in UPR impaired mutants (Fig. 1C). Another challenge with the FP misfolding model is that both a tandem dimer and an FP fused with either a short FP-derived peptide or a repeating GS peptide of a minimal length are sufficient to prevent ER reflux. It's unclear how a short flexible peptide would protect FP fusions from chaperone binding, unless the peptide somehow sterically blocks a chaperone binding site.
As a consequence of these studies, it is clear that biosensors and FP reporters require validation of functionality and expected localization in cells under the conditions to be explored. This represents another parameter, in addition to the often overlooked impact of different cell environments on biosensor folding and function (43-45). In this study, the size of some proteins may render the proteins susceptible to relocalization, during misfolded secretory protein stress, for example. Less obvious is the corollary of our findings, small resident ER proteins tagged with GFP or even a 10 amino acid tag could dramatically alter the ability of proteins to correctly relocalize in response to environmental stimuli. For example, Shao and Hegde described an ER-targeting and translocation pathway for small (<160 a.a.) secretory proteins (46). Small secretory proteins traffic posttranslationally from the cytosol to the Sec61 translocon via an interaction with calmodulin. Addition of a GFP or epitope tag would lengthen these proteins and switch these proteins over to the co-translational Signal Recognition Particle-dependent targeting pathway.
Ultimately, our data argue for caution when using GFP, other FPs or epitope tags to localize or characterize proteins. Raising antibodies against uncharacterized proteins remains an important component of basic cell biology research. Using tagged molecules, an undeniably powerful tool, to characterize proteins requires extreme caution and careful validation that tags do not perturb protein behavior and accurately reflect protein behavior in cells.

MATERIALS AND METHODS
Drugs. Stock solutions of DTT (1 M in water; Fisher Scientific, Pittsburgh, PA) and Tm (5 mg/ml in DMSO; Calbiochem, La Jolla, CA) were prepared and used at the indicated concentrations and times indicated. Table 1 for all yeast strains used in this study. All strains were derived from By4741 (MATα his3Δ0 leu2Δ0 met15Δ0 ura3Δ0) with transformed plasmids selected by dominant drug markers. The hrd1Δ strain was obtained from Dr. Ian Willis (Albert Einstein College of Medicine, New York). Kar2-sfGFP-HDEL strain was made previously (16). All yeast strains were grown in synthetic complete media supplemented with appropriate amino acids. Yeast strains were grown at 30°C. Yeast strains were grown overnight to early log phase (OD600 nm ≈ 0.5) for analysis.

Plasmid Constructions. Please see Supplemental Information for plasmid construction information.
Heat Shock Assay. Yeast cells were grown in the synthetic complete media supplemented with appropriate amino acids at 25ºC to the early log phase. Cells were either treated with Tm or untreated, and cultured at 30ºC or 40ºC, followed by fluorescence acquisition with time.
Fluorescence Microscopy. After incubation with indicated stresses or stressors, log-phase cells were placed in 8-well Lab-Tek chambers (ThermoFisher Scientific, Waltham, MA) and allowed to settle for 5 min before imaging. Cells were imaged in SC complete with appropriate selection components on an Axiovert 200 wide-field fluorescence microscope (Carl Zeiss MicroImaging, Inc., Thornwood, NY) with a 63X/1.4 NA oil immersion objective lens, a Retiga-2000 camera (QImaging, Surrey, BC Canada), and 470/40 nm excitation, 525/50 nm emission bandpass filter for GFP, 565/30 nm excitation, or 565/30 nm excitation, 620/60 nm emission bandpass filter for mCherry. Images were acquired with QCapture software. Confocal images were acquired with a Zeiss LSM-5 LIVE microscope with Duoscan attachment (Carl Zeiss MicroImaging) with a 63X, N.A. 1.4 oil objective and a 489 nm, 100 mW diode laser with a 500-550 nm bandpass filter for GFP or a 561 nm diode laser with a 565 nm longpass filter for mCherry. Assessment of FP localization was determined visually. Due to the small size of yeast, scatter, and autofluorescence, cells were scored simply for a nuclear and peripheral ER pattern versus substantial cytosolic and nuclear accumulation, as well as the frequent visibility of the yeast vacuole.
Photobleaching was also performed on the LSM-5 LIVE. FRAP experiments were performed by photobleaching a region of interest at full laser power of the 489-nm line and monitoring fluorescence loss or recovery over time. No photobleaching of the adjacent cells during the processes was observed. D measurements were made using an inhomogeneous diffusion simulation, as described previously (47,48). Image analysis was performed with ImageJ (National Institutes of Health, Bethesda, MD) and composite figures were prepared using Photoshop CC2018 and Illustrator CC2018 software (Adobe Systems, San Jose, CA).
Immunoblots. Early-log-phase yeast strains, untreated or treated with Tm, were pelleted and total protein extracted by alkaline lysis (49). Lysates were separated on 7.5% or 12% SDS-PAGE tricine gels, transferred to nitrocellulose membranes, and detected with anti-GFP (from Ramanujan Hegde, MRC Laboratory of Molecular Biology, Cambridge, United Kingdom), and horseradish peroxidase-labeled anti-rabbit (Jackson ImmunoResearch Laboratories, West Grove, PA).
Statistical Analysis. Prism software (GraphPad Software, San Jose, CA) was used to compare the different conditions using two-tailed Student's t-tests. For higher stringency, differences were not considered significant for p values >0.01.
SS is an uncleaved signal anchor.       The resulting fragment was digested and cloned into the SpeI/BamHI site of pRS415-GPD. The Pdi1pSS+3aa-tdsfGFP-HDEL or Pdi1pSS+3aa-tdTomato-HDEL fragments were amplified using the following primers: Forward, GCAAATGGGCGGTAGGCG Reverse, GATCGGATCCTTACAATTCATCGTG The resulting fragment was digested with BglII and BamHI and cloned into the BamHI site of pRS415-GPD.