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VEGFA links self-renewal and metastasis by inducing Sox2 to repress miR-452, driving Slug

Cancer stem cells (CSC) appear to have increased metastatic potential, but mechanisms underlying this are poorly defined. Here we show that VEGFA induction of Sox2 promotes EMT and tumor metastasis. In breast lines and primary cancer culture, VEGFA rapidly upregulates SOX2 expression, leading to SNAI2 induction, EMT, increased invasion and metastasis. We show Sox2 downregulates miR-452, which acts as a novel metastasis suppressor to directly target the SNAI2 3′-untranslated region (3′-UTR). VEGFA stimulates Sox2- and Slug-dependent cell invasion. VEGFA increases lung metastasis in vivo, and this is abrogated by miR-452 overexpression. Furthermore, SNAI2 transduction rescues metastasis suppression by miR-452. Thus, in addition to its angiogenic action, VEGFA upregulates Sox2 to drive stem cell expansion, together with miR-452 loss and Slug upregulation, providing a novel mechanism whereby cancer stem cells acquire metastatic potential. Prior work showed EMT transcription factor overexpression upregulates CSC. Present work indicates that stemness and metastasis are a two-way street: Sox2, a major mediator of CSC self-renewal, also governs the metastatic process.


INTRODUCTION
VEGFA is a cytokine that regulates vascular development during embryogenesis and the formation of new blood vessels from preexisting vascular networks. 1-3 VEGFA, secreted by cancer and stromal cells, stimulates endothelial cell invasion and vessel formation. 4 Without new blood vessel formation, tumor size is restrained due to limited nutrient and oxygen supply. VEGFA is expressed in a variety of tumors and its overexpression is associated with poor prognosis and death from metastasis. 5-7 VEGFA functions are not restricted to vasculogenesis and angiogenesis. 8 Autocrine VEGFA cooperates with EGFR to drive tumor development 9 and VEGFA has also been shown to drive tumor metastasis. 4,10,11 Indeed, patients with metastatic breast cancer have higher circulating VEGFA levels than those without metastasis. 12 Bevacizumab, a humanized monoclonal antibody that targets VEGFA, has been applied for the treatment of breast and other malignancies. However, trials in metastatic breast cancer have yielded variable results and the role of this drug is controversial. [13][14][15] Recent work sheds light on the limited results of bevacizumab in most cancers. Hypoxia caused by inhibition of angiogenesis, upregulates VEGFA expression, contributing to aggressive disease recurrence. 16,17 VEGFA was recently shown to increase tumor-initiating stem cell abundance in skin 18 and breast cancers, 19,20 and in glioblastoma. 21,22 The high local VEGFA induced by hypoxia following bevacizumab treatment would thus also promote expansion of the tumor cell subset with the greatest ability to initiate and disseminate tumors.
Cancer stem cells (CSCs) show greater motility and metastatic potential than the bulk tumor cell population and have been postulated to be drivers of tumor metastasis, [23][24][25] but the mechanisms underlying this are not fully characterized. Metastasis requires cell invasion and escape from the primary tumor into the vasculature followed by colonization of secondary sites. Tumor invasion and intravasation are enabled by the epithelial to mesenchymal transition (EMT), a process in which epithelial cells lose polarity and intracellular adhesion, and acquire motility and invasiveness. [26][27][28][29] The EMT is regulated by diverse molecular networks including TGF-β, Notch, Wnt, Hedgehog and NF-κB signaling pathways, all of which have central roles in cancer invasion and metastasis. 30 Downregulated expression of the cell adhesion molecule, E-cadherin, is critical for acquisition of the EMT phenotype and tumor invasion. 31 Many EMT transcription factors repress CDH1, the gene encoding E-cadherin, directly or indirectly. Snail, 32,33 Slug, 34 Zeb1 35 and Zeb2 36 can bind the CDH1 promoter and repress its transcription, whereas other factors such as Twist, 37 Goosecoid 38 and fork-head box protein C2 (FOXC2) 39 repress CDH1 indirectly. Slug, whose expression correlates strongly with loss of E-cadherin, is an important EMT mediator in breast cancer cell models. 40 The EMT program has been linked to the initiation and/or maintenance of CSCs. Enforced expression of EMT transcription factors has been shown to increase cancer stem cell abundance, and stem-like cells exhibit EMT properties such as increased expression of mesenchymal markers and EMT transcription factors, suggesting a link between cancer stem cells and the EMT process. 41,42 However, pathways governing the relationship between cancer stem cells and EMT are not fully defined. VEGFA not only increases the tumor-initiating stem cell population in several different murine and human cancer models, [18][19][20][21][22] but is also known to induce EMT and metastasis. [43][44][45] Our prior work showed that VEGFA rapidly activates STAT3 to induce SOX2 and increase the CSC population in breast and lung models. 19 Here, we investigated whether upregulation of Sox2 by VEGFA might have a role not only in CSC expansion but also contribute to the activation of EMT and metastasis.
MicroRNAs (miRNAs) are small, noncoding RNAs that regulate transcriptional and post-transcriptional gene expression. Approximately 70% of all genes are regulated by miRNA in eukaryotes. 46,47 miRNAs carry out important functions in development, differentiation, cell cycle progression and apoptosis. Mature miRNAs bind complementary sequences in the 3′-untranslated region (3′-UTR) of target genes and repress gene expression by inducing mRNA degradation and/or translational inhibition. 48,49 In cancers, miRNA expression is deregulated by amplification, deletion, mutation and epigenetic silencing. [50][51][52] Many miRNAs act as either oncogenes or tumor suppressors to regulate malignant transformation and metastatic progression. 52 MiRNAs modulate the metastatic process by targeting metastasis suppressor genes or by repressing metastasis promoting genes. 53 Several miRNAs regulate EMT transcription factors including Zeb1, Zeb2 and Snail. [54][55][56] Indeed, several miRNAs that target EMT transcription factors, such as miR-200 that targets Zeb1 54,57-59 and miR-34 that targets Snail, 60 also repress cancer stem cell self-renewal. 47 Here, we identify a novel pathway in which Sox2, a stem cell driver upregulated by VEGFA, 19 contributes to the activation of EMT. VEGFA leads to induction of the stem cell transcription factor gene SOX2. Sox2, in turn, mediates repression of miR-452, which is shown to directly target the 3′-UTR of SNAI2, leading to EMT and breast cancer metastasis.

VEGFA induces EMT and an increase in motility and invasion in breast models
In addition to its angiogenic effects, VEGFA promotes cancer stem cell expansion. 19 VEGFA also drives cancer invasion and metastasis in experimental models. 43,45 Cancer stem cell expansion is linked to, and potentially driven by, upregulation of EMT transcription factors, 41,42 but whether stem cell drivers can also promote EMT has not been fully investigated. To investigate whether VEGFAmediated CSC expansion might also be linked to EMT activation and metastasis, we tested the effect of VEGFA on motility and invasion in aggressive ER-negative breast cancer models. Since our earlier work showed a prolonged 7-day exposure to VEGFA caused an irreversible increase in stem-like cells, 19 all experiments used 7 days of VEGFA (10 ng/ml), unless otherwise indicated. VEGFA-treated MDA-MB-231 showed faster migration on wound-healing assays and increased matrigel invasion compared with controls (Figures 1a and b). Results were validated in an ER, PR and Her2 (triple) negative primary breast cancer-derived line, SUM149PT (Supplementary Figure S1a and b).
Acquisition of an EMT phenotype is critical for metastasis. Mesenchymal markers (vimentin, fibronectin and N-cadherin) were upregulated by VEGFA in MDA-MB-231 and SUM149PT lines and in the immortal but not malignantly transformed human mammary epithelial line, MCF12A. Epithelial markers, including one or both of E-cadherin and Zo-1, were decreased in all three cell lines (Figures 1c-e), compatible with a VEGFA-induced EMT.
VEGFA increases motility and invasion by upregulating Slug in breast cancer cells Expression of major EMT-driving transcription factors (EMT-TFs), Slug, Snail, Zeb1 and Zeb2, was induced over a 7-day VEGFA exposure. The temporal patterns of EMT-TF upregulation during prolonged VEGFA exposure for MDA-MB-231 and MCF12A are shown in Supplementary Figures S2A and B. Of these, SNAI2, which encodes Slug, was the most strongly induced after 7 days, and was thus investigated further (Figures 2a and b). Sox2 is required for VEGFA-driven Slug upregulation and for increased motility and invasion Sox2 drives self-renewal in both embryonic stem cells and in several cancer stem cell models 61,62 and is a key mediator of VEGFA-driven CSC expansion. 19 CSC are thought to be drivers of tumor metastasis and exhibit greater motility and metastatic potential than bulk tumor cells. 23,24,63 Notably, EMT-TF overexpression leads to expansion of cells with stem cell characteristics. 41,42 Here we tested whether the reverse is also true and whether the embryonic stem cell factor, Sox2, might mediate VEGFA-driven EMT. Upregulation of SOX2 expression by VEGFA occurs rapidly, within 1 h in MDA-MB-231 and SUM149PT ( Figure 3a) and remains elevated for at least 7 days. 19 SOX2 induction precedes that of SNAI2 by several days.  Figure 3h). Thus, the rapid VEGFA-STAT3-mediated induction of SOX2 19 not only precedes, but is required for that of SNAI2 and for the increased migration and invasion following VEGFA exposure in both MDA-MB-231 and SUM149PT.
Although SOX2 siRNA significantly decreased VEGFA-induced SNAI2, SOX2 siRNA-transduced cells still showed a modest but significant increase of SNAI2 by VEGFA (Figure 3b right). This may reflect incomplete SOX2 knockdown by transient siRNASOX2 transfection (Figure 3b, left). It is also possible that additional mechanisms govern VEGFA action on Slug.
miR-452 downregulation is required for VEGFA-mediated increases in Slug and invasion The SNAI2 promoter contains a single, putative Sox2 consensus motif, but Sox2 binding to this motif was not detected after VEGFA treatment. Notably, several studies of global Sox2 DNA binding by ChIP-sequencing also failed to show stable binding of Sox2 to the SNAI2 promoter. [64][65][66][67] These findings, and our observation that Sox2 is upregulated by VEGFA within hours (Figure 3a), but SNAI2 expression only increases several days later (Figures 2a and b) suggested that Sox2-mediated SNAI2 induction is indirect.
Since Sox2 is known to induce several miRNAs to drive stem cell self-renewal, we investigated whether a miRNA-driven mechanism might govern Slug upregulation. A miRNA screen of MDA-MB-231 cells before and after VEGFA treatment was performed. Among over 700 miRNAs, 47 miRNAs were significantly downregulated by VEGFA (see Supplementary Figure S4). The miRNA target prediction software TargetScan (Version 6.2) was used to identify miRNAs decreased by VEGFA that could potentially target SNAI2. Of four potential candidates, miR-452 had the highest probability score for targeting SNAI2 and was investigated herein. A second miRNA target prediction database (microT-CDS version 5.0) verified miR-452 as a putative regulator of SNAI2 expression. VEGFA downregulated miR-452 in both MDA-MB-231 and SUM149PT. miR-452 was decreased within 6-12 h and reduced levels persisted after 7 days of VEGFA treatment (Figure 4a, bottom panel). To further validate this finding, DT22, an early passage culture derived from a triple-negative primary human breast cancer was tested. This culture has been extensively validated and its gene expression and tumor marker profiles resemble those of the cancer from which it was derived. 68 Prolonged exposure of DT22 to VEGFA over 7 days also led to There are three putative miR-452 binding sites within the 3′-UTR of SNAI2 (Figure 4i). To investigate whether miR-452 directly targets the 3′-UTR of SNAI2 to repress Slug expression, a reporter assay was performed using the 3′-UTR of SNAI2 to drive luciferase expression. 293T and MDA-MB-231 cells were transfected with a human SNAI2 3′-UTR luciferase reporter plasmid together with plasmids encoding either the miR-452 precursor or control miRNA, and luciferase activity was measured after 48 h. miR-452 transfection significantly reduced luciferase activity, indicating miR-452 targets the SNAI2 3′-UTR to repress Slug expression ( Figure 4j). A mutant SNAI2 3′-UTR luciferase vector was constructed in which all three putative miR-452 binding sites were mutationally disrupted. When this mutated vector was co-transfected into 293T cells with the miR-452 precursor plasmid, luciferase activity was not impaired. Thus one or more Repression of miR-452 is required for VEGFA-dependent cancer metastasis in vivo Although VEGFA has been shown to drive cancer metastasis, 45,69 mechanisms thereof are largely unknown. To test whether VEGFA drives metastasis in vivo through regulation of miR-452 and Slug, MDA-MB-231 cells were pre-treated with VEGFA for 1 week before injection by tail vein into nude mice, without further VEGFA The cells were then treated ± 10 ng/ml VEGFA for 7 days and then recovered for assays of SNAI2 and Slug expression by QPCR and western, respectively (c) and assays of migration (d) and matrigel invasion (e).
(f and g) The SUM149PT cells were transduced with siSNAI2 or control siRNA for 48 h then treated ± 10 ng/ml VEGFA for 7 days followed by assays of SNAI2 and Slug expression by QPCR and western, respectively (f) and by real-time matrigel invasion assay (g). All graphs show mean ± s.e.m. Mean values were compared by Student's t test. * denotes P o 0.05 for test versus control.
treatment after tumor cell injection. The animals were monitored by in vivo imaging system. VEGFA pre-treated cells gave rise to a significant increase in lung tumor establishment as measured by tumor bioluminescence on in vivo imaging system over the next 5 weeks compared with mock-treated cells (Figures 5a-d). VEFG also increased green fluorescence of lung tumors (Figures 5e). miR-452 overexpressing cells failed to respond to VEGFA, and showed no effect of VEGFA pre-treatment on tumor metastasis. Notably, transduction of a SNAI2 cDNA vector lacking the 3′-UTR into miR-452 overexpressing cells overcame the effect of miR-452 to inhibit VEGFA-stimulated metastasis in vivo (Figures 5a-e).
VEGFA treatment does not affect MDA-MB-231 cell cycle progression or population growth. 19 Overexpression of miR-452 and SNAI2 did not change cell proliferation (Supplementary Figure S6), thus differences in the metastatic tumor burdens of each group are not due to differences in growth rates. The animals injected with VEGFA pre-treated cells showed extensive areas of confluent tumor growth in the lungs on microscopic analysis, precluding accurate enumeration of tumor nodules (Figures 5d). As a second measure of lung tumor burden, lung weights were measured. The lung weights were significantly increased in animals injected with VEGFA-pretreated cells,  Finally, SNAI2 transduction into the miR-452 overexpressing cells yielded similar lung weights to those in the VEGFA-treated group (Figure 5f). Thus miR-452 repression is required not only for VEGFA-dependent Slug upregulation in vitro, but also for increased cancer metastasis in vivo.
VEGFA, SOX2, SNAI2, miR-452 and GABRE expression and prognosis in primary breast cancers Our in vitro and in vivo models suggest a mechanism in which VEGFA induces EMT and metastasis by activating Sox2, resulting in de-repression of SNAI2 through loss of miR-452 (Figure 6a). To validate our findings in vivo, we tested whether high VEGFA alone or together with high SOX2, SNAI2 and decreased miR-452 expression might identify prognostic subsets of primary human breast cancers. miR-452 is expressed as an intronic transcript from the GABRE gene locus. 70 Pearson's correlation analysis of two independent breast cancer data sets, the METABRIC and Enerly data sets, 71,72 respectively, showed that miR-452 expression correlated strongly with that of its parent transcript, GABRE (R 2 values of 0.484 and 0.786 in the METABRIC and Enerly data sets, respectively; Figure 6b), indicating GABRE can be used as a surrogate for miR-452 expression in data sets, such as KM Plotter, that lack microRNA data. As Sox2 regulates SNAI2 expression via miR-452, we next tested whether high VEGFA expression (top quartile) alone or in   Figure 6d). ER-negative cancers with high VEGFA and SOX2 expression showed significantly shorter DMFS (HR = 2.72 [95% CI, 1.11-6.7]; P = 0.023; Figure 6d). Remarkably, among ER-negative breast cancers, those with high VEGFA, SOX2 and SNAI2 together with low GABRE expression showed a 4.54-fold higher risk of metastasis, with DMFS (HR [95% CI] = 4.54 [1.67-12.35]; P = 0.0011, Figure 6d). These KM Plotter data identify a very aggressive population within all cancers and in ER-negative breast cancers, in which the mechanistic pathway identified herein appears to be activated.
To validate these findings in an independent patient group, a similar analysis was carried out for disease-specific survival (DSS) in the METABRIC breast cancer data set (n = 1286). Analysis of this second independent patient cohort confirmed the prognostic significance of VEGFA and showed that elevation of both VEGFA and SOX2 expression associated with a worse survival than did VEGFA elevation alone. High VEGFA alone conferred a 1. 69

DISCUSSION
VEGFA is best known as an angiogenic agent, 73 but it also promotes cancer invasion and metastasis through mechanisms that are not fully understood. VEGFA not only creates a vascular niche for expanding stem cells, 21 it was recently shown to increase the stem-like cell population in certain human malignancies, including breast cancer. [18][19][20]22 Hypoxia, caused by angiogenesis inhibitors, stimulates VEGFA gene expression, and would thus contribute to CSC expansion 74 and disease recurrence and progression. 16,17 CSC have been implicated as drivers of tumor metastasis, however, the molecular pathways linking stemness and induction of metastasis are not fully elucidated. Populations bearing surface CSC markers [75][76][77] or that are enriched for ALDH1 activity 78 have been shown to have greater motility, invasiveness and metastatic potential than the bulk of the cancer population. Recent work in a pancreatic model showed EMT and dissemination may precede overt tumor invasion. 79 Circulating tumor cells could be detected during in situ tumor growth before overt invasion. Circulating tumor cells bearing the CSC marker, CD44+, showed much more aggressive self-renewal and tumor-generating potential than CD44+-positive cells from the primary tumor site, indicating that escape of stem-like cells from the primary tumor environment is linked to increased self-renewal potential. 79 Sox2 is an important mediator of self-renewal in embryonic stem cells and is an oncogenic driver of CSC in several cancer models, including breast cancer. 19,25,61,62 Our prior work showed that VEGFA mediates CSC expansion via STAT3-driven SOX2 induction in breast and lung cancer models. 19 Proinflammatory cytokines that are upregulated on breast cancer cell invasion into fat also induce SOX2 to drive CSC self-renewal. 25 SOX2 knockdown can decrease both CSC and experimental lung metastasis 62 and SOX2 expression is associated with colon cancer metastasis. 80 Present work reveals Sox2 is necessary for VEGFA-driven SNAI2 induction, EMT and invasion of breast cancer cells and provides a mechanistic link between VEGFA-stimulated CSC expansion via SOX2 induction, 19 and the upregulation of metastatic potential.
EMT arising from overexpression of various EMT-TFs has been shown to increase tumor-initiating cell abundance; 41,42 moreover, stem-like cells exhibit EMT properties such as increased mesenchymal markers and EMT transcription factor expression 81 suggesting an intimate relationship between CSCs and EMT. Mammary cell lines overexpressing various EMT-TFs showed PLCγ-mediated PKC activation leading to a c-Jun/Fra1-induced CSC transcriptional program. 82 TGF-β and TNFα pathways interact to drive both EMT and upregulate breast CSC properties. 83 Elegant in vitro and in vivo studies in a Trp53-null mouse breast cancer model showed cross-talk between transformed mesenchymal cells and tumor-initiating subpopulations. The mesenchymal cells produced stimulatory ligands driving CSC surface receptors to increase tumorigenicity and metastasis via both Wnt/Fzd7 and CXCL12/CXCR4 pathways, 84 suggesting that heterogeneous cell populations with differing stem cell self-renewal may interact with each other to drive pathways governing both self-renewal and metastasis.
miRNAs regulate many processes central to oncogenesis. 47 Several miRNAs oppose EMT by targeting EMT transcription factors. 85 miR-200 targets Zeb1 and Zeb2 54,57-59 as does miR-138, 86 and Snail is targeted by miR-30a 56 and miR-34. 60 A number of miRNAs not only regulate EMT but also serve as key CSC regulators. For example, miR-200 not only inhibits EMT by suppressing Zeb1/2, but also downregulates stem-like cells by targeting Bmi1 87,88 and the Notch pathway. 89 In addition to its action on Snail, miR-34a also decreases CSC by targeting Myc 90 and downregulates CD44 expression to decrease prostate CSC. 91 miR-128-2 targets both the EMT mediator Snail, and CSC drivers Nanog, KLF4 92 and Bmi1. 93 Here we identify miR-452 at the interface between VEGFAactivated CSC self-renewal and EMT, providing a novel connection between VEGFA, induction of the embryonic stem cell transcription factor, Sox2 and EMT. Sox2 not only governs CSC expansion, but also mediates acquisition of EMT and metastatic potential. VEGFA-induced SOX2 expression is required not only for CSC expansion, 19 but also for VEGFA-mediated SNAI2 induction. VEGFA increased SOX2 expression within an hour, but EMT-TF levels, and in particular that of Slug, rose over several days, suggesting that Sox2 affects Slug indirectly, via an intermediary mechanism. Our miRNA screen identified miR-452 as a putative metastasis suppressor, significantly downregulated by VEGFA in MDA-MB-231 cells. miR-452 is downregulated in breast cancers compared with normal breast tissue. 94 We show miR-452 targets SNAI2 directly. MiR-452 overexpression abrogated the VEGFAmediated upregulation of SNAI2 expression and cell invasion, and miR-452 antagomir was sufficient to upregulate SNAI2 expression and cell invasion. Sox2 upregulation by VEGFA mediates the loss of miR-452, and miR-452 loss is required for Slug upregulation and for VEGFA-driven cell motility, invasion and metastasis in breast cancer models. Notably, miR-452 expression correlates inversely with glioblastoma survival and inhibits glioma stem cells and tumorigenesis by targeting CSC mediators, Bmi1, LEF1 and TCF4. 95 Thus, miR-452 may not only regulate Sox2-driven EMT via Slug, but may also serve a dual role at the interface between EMT and CSC regulation.
The pathway linking VEGFA to Sox2 upregulation, miR-452 loss and SNAI2 induction is supported by our analysis of two major data sets including over 2500 primary human breast cancers. Although high intratumor VEGFA levels detected by immunohistochemistry have been linked to poor breast cancer outcome, most studies have been small and results controversial. 96,97 Our analysis showed breast cancers in the highest quartile of VEGFA expression fare worse than all others, and the prognostic value of high VEGFA levels is increased by sequential addition of high SOX2, SNAI2 and decreased GABRE (a surrogate for miR-452) expression. This finding is less important for its prognostic significance than it is as a confirmation of the molecular pathway identified herein. Among aggressive breast cancers expressing high VEGFA, those with SOX2 overexpression define an even more aggressive subgroup in the two independent data sets evaluated.
VEGFA is a critical mediator of tumor progression. It acts to generate a vascular niche for CSC through autocrine and paracrine action on both tumor and microenvironmental components, and links CSC self-renewal to the acquisition of metastatic potential. To date, targeting VEGFA has had limited success in cancer, and this may be due to anti-angiogenics causing tumor hypoxia, leading to upregulation of both VEGFA and CSC. Since treatment of metastasis is the final therapeutic frontier, it is hoped that mechanistic insights linking VEGFA to tumor initiation and the acquisition of metastatic potential will ultimately generate new strategies for VEGF pathway-targeted intervention.

Cell lines and reagents
Luciferase-tagged MDA-MB-231 (from J Massague, MSKCC, New York, NY, USA), Lenti-X 293 T cells (from Clontech, Mountain View, CA, USA) and MCF12A line were cultured as described. 19 Both lines were verified by STR profiling. SUM149PT cells were provided by S Ethier (Medical University of South Carolina, Charleston, SC, USA) and cultured in Ham's F12 medium with 5% FBS, 5 μg/ml insulin, 1 μg/ml hydrocortisone and 1 mM HEPES. 98 All lines were mycoplasma free.
Scratch assay MDA-MB-231 cells were seeded into six-well plates, grown to confluence and wound-healing scratch assays were performed as in Larrea et al., 99 and the cells were photomicrographed after 12 h using an Olympus CKX41 microscope.

Transwell migration and invasion assays
Real-time cell analysis from Xcelligence (ACEA Biosciences, San Diego, CA, USA) was used for automated transwell migration and invasion from serum-free toward serum-containing medium was as described 100 and plotted as mean cell index ± s.e.m. for at least three independent wells per group.
Quantitative real-time PCR and miRNA RT-PCR QPCR was performed at least thrice and mean Ct values normalized to GAPDH or 18S values. mRNA isolation used miRNeasy mini kit (Qiagen, Hilden, Germany) and cDNA synthesys used NcodemiR First-Strand cDNA synthesis kit (Invitrogen, Carlsbad, CA, USA). miR-452 levels were assayed by QPCR. PCR primers for EMT markers and transcription factors assayed, and for miR-452 are in Supplementary Figure S8. miRNA screen and antagomiR MDA-MB-231 cells were treated ± 10 ng/ml VEGFA for 7 days followed by Ready-to-Use PCR microRNA array, Human panel I+II in 384-well plates from Exiqon (Woburn, MA, USA). miRCURY LNA miR-452 antagomir and miRCURY LNA miRNA antagomir control were purchased from Exiqon (Woburn, MA, USA) and transduced per manufacturer.
Experimental lung metastasis assay MDA-MB-231-luc and controls transduced with miR-452 or miR-452+SNAI2 were pre-treated ± VEGFA for 7 days, before injection of 5 × 10 5 cells via tail vein into 4-6-week female Balb/C nude mice as described. 19 Each experimental group contained 10 animals. The mice were imaged by in vivo imaging system (Xenogen, Caliper, Hopkinton, MA, USA) and bioluminescence (photon flux) was quantified with time as described. 100 All animal work was carried out in compliance with the Institutional Animal Care and Use Committee in the University of Miami.
Statistical analysis and expression analysis of VEGFA, SOX2, SNAI2, GABRE genes and miR-452 The METABRIC data set contains gene expression data for 2136 and microRNA expression for 1448 primary breast cancer samples, with both available in 1302 samples, together with clinical information and DSS outcome data. 71,101 METABRIC and the independent Enerly primary breast cancer data set, containing 101 cases, 72 were used to identify a correlation between miR-452 and GABRE expression by Pearson's correlation. The KM plotter data set contains gene expression from primary human breast cancers (n = 2553) and was used for the analysis of distant metastasis-free survival (DMFS).
For clinical outcome analysis, expression quartiles were used to test whether VEGFA expression alone, or with the other genes, associated with poor DSS (METABRIC) or with poor DMFS (KM plotter) using Kaplan-Meier analysis and Univariate Cox proportional hazards analysis identified hazard ratios with 95% CI. DSS or DMFS curves were also compared using the log-rank test and the P-value from this analysis was displayed in each graph. Data analysis was performed using R statistical software or by using the KM plotter web tool, as in Gyorffy et al. 102 Mihaly et al. 103 For in vitro work, data are graphed from ⩾ 3 biologic experiments as means ± s.e.m. Means were compared with two-tailed Student's t-tests. P-values o0.05 were considered statistically significant. Statistical differences of a real-time cell analysis data between invasion rates used the 'Compare Growth Curves' function (http://bioinf.wehi.edu.au/software/ compareCurves/). Sox2 stimulates metastasis by decreasing miR-452 M Kim et al