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Recalcitrance of Cannabis sativa to de novo regeneration; a multi-genotype replication study

Cannabis sativa is relatively recalcitrant to de novo regeneration, but several studies have reported shoot organogenesis or somatic embryogenesis from non-meristematic tissues. Most report infrequent regeneration rates from these tissues, but a landmark publication from 2010 achieved regeneration from leaf explants with a 96% response rate, producing an average of 12.3 shoots per explant in a single drug-type accession. Despite the importance regeneration plays in plant biotechnology and the renewed interest in this crop the aforementioned protocol has not been used in subsequent papers in the decade since it was published, raising concerns over its reproducibility. Here we attempted to replicate this important Cannabis regeneration study and expand the original scope of the study by testing it across 10 drug-type C. sativa genotypes to assess genotypic variation. In our study, callus was induced in all 10 genotypes but callus growth and appearance substantially differed among cultivars, with the most responsive genotype producing 6-fold more callus than the least responsive. The shoot induction medium failed to induce shoot organogenesis in any of the 10 cultivars tested, instead resulting in necrosis of the calli. The findings of this replication study raise concerns about the replicability of existing methods. However, some details of the protocol could not be replicated due to missing details in the original paper and regulatory issues, which could have impacted the outcome. These results highlight the importance of using multiple genotypes in such studies and providing detailed methods to facilitate replication.


Introduction
Plant tissue culture techniques provide the foundation for advanced biotechnologies such as protoplast regeneration systems, microspore culture for double haploid production, transgenics, genome editing, and other important tools which have yet to be fully explored in Cannabis sativa L. Due to prohibition, early micropropagation studies of Cannabis were limited in number and scope, with the majority of research relying on a single drug-type genotype or on less regulated industrial hemp cultivars (Cannabis sativa with <0.3% w/w tetrahydrocannabinol (THC) in the flowering heads) [1]. These early studies found that both drug-type Cannabis (high-THC; >0.3% w/w THC) and industrial hemp can be maintained in vitro [2][3][4] and that plants derived from in vitro grown C. sativa display comparable chemical and physical profiles to greenhouse-grown counterparts [2], with no significant effect on the cannabinoid contents of high-THC genotypes [4,5]. Regulations surrounding the production and consumption of Cannabis have since relaxed, creating an increased need and opportunity to explore the application of plant biotechnologies in the Cannabis industry. However, without robust and reproducible in vitro regeneration systems the widespread application of plant biotechnologies remains unfeasible. In C. sativa, the majority of micropropagation studies rely on shoot multiplication from existing meristems found in the apical and axillary buds [6]. Numerous protocols report regeneration from meristematic tissues at levels greater than 70% [4,[7][8][9], with the most effective of these protocols rely on existing meristems found in the nodal tissues of vegetative cuttings. In vitro cultures of these tissues can be used to establish multiple shoot cultures (MSC), which have been reported to produce upwards of 9 to 13 shoots from a single nodal segment [4,8]. Unfortunately, most existing protocols are developed using only one high-THC genotype of C. sativa. Often the most successful methods have used the genotype MX from the University of Mississippi [7,[10][11][12]. Recent evidence suggests that micropropagation protocols developed using a single genotype of C. sativa may not be replicable when tested on other genotypes, instead resulting in significantly lower multiplication rates [13]. Notably, most micropropagation protocols published in the United States are developed with Cannabis supplied by the University of Mississippi, who is funded through the National Institute on Drug Abuse (NIDA) as the sole licensed facility to supply Cannabis for research purposes in the United States [14,15]. There is mounting evidence that NIDA supplied Cannabis may not be representative of the broader population of Cannabis which can be obtained from commercial producers [14][15][16], and given this apparent discrepancy it is unknown if methods developed using NIDA supplied Cannabis will work effectively for commercially relevant genotypes.
Plant biotechnologies such as inter-specific hybridization via protoplast fusion or targeted genome editing using CRISR-CAS9 (clustered regularly interspaced short palindromic repeats-CRISPR associated protein 9) have been well established in many commercially important plant species. However, these technologies have not been successfully applied in C. sativa due to a lack of reliable and robust regeneration protocols that are required to regenerate plants from somatic cells or protoplasts [17]. In addition to applications in biotechnologies, regeneration from somatic tissues would increase multiplication rates due to the wider range of responsive tissues compared to MSCs, and could be valuable for micropropagation. While most published methods using non-meristematic tissue of Cannabis report low levels of regeneration [3,5,[18][19][20][21][22], a three-part regeneration system reported by Lata et al. [12] has shown success in leaf explants from a high-THC genotype, MX. In this protocol, the authors report optimized callogenesis on Murashige & Skoog (MS) [23] medium with 0.5 μM of α-naphthaleneacetic acid (NAA) and 1.0 μM thidiazuron (TDZ). Regeneration was most successful by transferring cultures to MS medium with 0.5 μM TDZ, resulting in 96.6% of cultures responding with an average of 12.3 shoots per culture [12]. Rooting was subsequently achieved on medium consisting of half-strength MS salts and 2.5 μM indole-3-butyric acid (IBA) [12].
As with many shoot induction methods, this protocol was only tested on MX, but the authors suggest their methodology may be suitable for both male and female plants of any other genotype in the species [12]. Despite the publication of this protocol over a decade ago and the implications it has for advances in Cannabis biotechnology, it has not been replicated in subsequent publications by any independent research groups or the original authors. There has been an increasing awareness of what is dubbed the 'reproducibility crisis' in scientific literature and over 50% of biologists have reported that they have failed to reproduce published research [24]. This crisis has been attributed to structures in academia that base hiring of faculty, promotion and tenure on the novelty, impact and volume of published literature and to journals who strive to publish "ground-breaking" research often resulting in the refusal to publish validation or replication studies, especially those studies showing negative results [24][25][26]. The incentivization of novel results arising from clean research narratives has been linked to incomplete reporting of methodologies and the omission of negative results [25] and with a rising number of retractions occurring each year [27] there is a case for more accountability through replication studies and 'open data' initiatives. These aforementioned incentives promote novel results with succinct storylines at the expense of robust reporting of methodologies and conducting replication studies. Publication of replication studies is necessary and can prove especially beneficial to emerging fields such as Cannabis micropropagation where the body of literature is limited, and existing studies are based on a narrow genetic base from relatively few research groups.
As the regulatory landscape evolves to facilitate research in this nascent field, there is growing interest in Cannabis regeneration (Fig 1) and an increasing need for reliable methods. Despite growing interest, the number of drug-type genotypes used in protocol development has historically been very low [5,12,21,28] and only recently have five or more genotypes been included in a single study [13,29]. In stark contrast, regeneration studies on commercial hemp varieties can boast up to 12 genotypes and has identified significant genotypic variability [18]. Generalizing conclusions based on single-genotype studies has faced scrutiny, and this is particularly poignant given the chemical and genetic differences identified between the genotypes used for research purposes and commercially relevant germplasm [14][15][16]. Despite growing evidence of the diversity of Cannabis, there have been limited in vitro attempts to assess the effects of this genetic diversity on replicability of existing tissue culture methods [13]. The objective of this study was to replicate the Lata et al., 2010 [11] methods as closely as possible across 10 different genotypes to assess the reproducibility of this protocol and to provide insight into the variability in genotypic response.

Regeneration from leaf-derived explants
Plant material. All leaf material was sourced from in vitro shoots maintained within a long-term in vitro germplasm at the University of Guelph. All explants used in this experiment were from Stage 2 in vitro grown shoots maintained as previously described [6,13]. The plants had been in a state of vegetative growth for at least 6 months and were routinely subcultured ever 4-6 weeks. The clonal genotypes used in the study (GRC, U22, U31, U37, U38, U42, U61, U82 and U91) were obtained from Hexo Corp. (Gatineau, Quebec) and the heterogenous seed-derived genotype (RTG) was obtained from RotoGrow (Bolton, Ontario). Prior to the experiments all plants had been maintained on semisolid medium composed of DKW nutrients (Phytotechnology Laboratories, KS, USA), 3% sucrose and 6 g/L agar in a controlled atmosphere growth chamber, under a 16-hr photoperiod at 25˚C. These plants were maintained in We-V boxes (We Vitro Inc., Guelph, ON) each containing between 8 and 12 female explants. To ensure consistent sampling, leaf explants were taken from young, fully expanded leaves found no lower than 3 nodes below the apical tip of the shoot. The first experiment included two drug-type genotypes: GRC and RTG. After these two genotypes failed to regenerate, the protocol was repeated using a more comprehensive genetic pool of 10 unique genotypes. For the second replication of the experiment, GRC and RTG were selected again, alongside 8 additional clonal genotypes: U22, U31, U37, U38, U42, U61, U82 and U91.  [23] (MS; M524 Phytotechnology Laboratories, KS, USA) nutrients, 3% sucrose, 0.8% (w/v) type E agar (Sigma Aldrich, St. Louis, MO), and pH adjusted to 5.7 using 1 M NaOH and 1 M HCl [12]. The callus induction medium (hereafter referred to as LT-C) consisted of MS (M524; Phytotechnology Laboratories) nutrients, 3% sucrose, 0.8% (w/v) type E agar (Sigma Aldrich), 0.5 μM NAA (Sigma Aldrich), and 1.0 μM TDZ (Caisson Laboratories, Inc., Smithfield, UT) adjusted to a pH of 5.7 [12]. The shoot induction medium (hereafter referred to as LT-S) consisted of MS (M524; Phytotechnology Laboratories) nutrients, 3% sucrose, 0.8% (w/v) type E agar (Sigma Aldrich), 0.5 μM TDZ (Caisson) and adjusted to a pH of 5.7 [12]. Each glass culture vessel (9.05 cm high × 5.8 cm diameter baby food jars; Phytotechnology Laboratories) contained 25 mL of media which were sterilized by autoclaving for 20 minutes at 121˚C and 18 PSIG.
Callogenesis. Callogenesis was carried out on LT-C media, along with MS-0 as a negative control. Since some details of explant preparation and culture methods were not specified in the original protocol published by Lata et al., 2010 [11], decisions were made based on the information provided (See Table 1 for specific comparison of methods). Leaf explants were excised into 1 cm 2 squares using a sterile scalpel in a biological safety cabinet. All leaf explants were taken along the central axis of the leaflet, so as to include mid-rib tissues (Fig 2A) and excluded petioles. The abaxial side of one explant was carefully placed onto the medium in each glass jar culture vessel and gently tapped down to the surface of the media to maximize contact and mitigate unwanted movement while handling. Ten explants of each genotype were assigned to each treatment (n = 10). The capped jars were wrapped twice with Micro-pore™ tape (3M™, St. Paul, MN), randomized, and placed together in a controlled atmosphere growth chamber, under a 16-hr photoperiod at 25˚C. Photosynthetically active radiation (PAR) and light spectral data (S1 Fig) were obtained using an Ocean Optics Flame Spectrometer (Ocean Optics, FL, USA; raw spectral data available on the OSF database: https://osf.io/ kdc72/?view_only=5d8879ca2f2e479eb3b7635e1f6e3941). The average PAR of the experimental area was 48.74 ± 3.53 μmol s -1 m -2 . Explants were maintained under these conditions for 8 weeks and checked weekly for callus development. Callus mass and percent response were measured after 8 weeks of culture on LT-C and prior to moving calli to the shoot initiation medium.
Shoot initiation and rooting. Attempting to initiate shoot organogenesis from the calli, 8-week-old calli cultured on LT-C were moved to baby food jars containing 25 mL of LT-S medium and maintained under the previously described conditions. Control explants from the callogenesis phase (grown on MS-0) which were still living were subcultured to baby food jars containing 25 mL of new MS-0 media following 8 weeks of culture. In the original study by   [11], callus cultures were maintained on LT-S until shoots exceeded 2.5 cm in height at which point they were moved to a root induction medium [12]. In the present study, no calli underwent shoot regeneration within the 4 months that they were maintained on LT-S (see Results & Discussion). Calli which had died ( Fig 2B; further discussed in the Results & Discussion), or had stopped growing were considered to be non-responsive and destroyed after four months.

Simple Sequence Repeat (SSR) analysis of cultivars
Plant material. Fresh stem tissue obtained from in vitro grown explants was used for all DNA extractions. For each clonal genotype (U22, U31, U37, U38, U42, U61, U82, U91 and GRC) three, 1 cm stem segments each obtained from three separate clonal explants were pooled together. Due to the heterozygous nature of the RTG plants, a 2 cm segment was taken from each of the twelve in vitro explants used in both experiments and each of these 12 samples were processed separately. The approximate weight of each of these fresh tissue samples was 100 mg.
DNA extraction. DNA extraction was performed using NucleoSpin1 Plant II Mini (Macherey-Nagel, Dürin, Germany) as per manufacturer's instructions with minor modifications. The following modifications were made to the manufacturer's procedure: PL1 and RNase A buffers were added to tissue samples in a 2.0 mL microcentrifuge tube prior to homogenizing. Samples were homogenized using a SPEX SamplePrep 1600MiniG1 homogenizer (SPEX, Metuchen, NJ) at 1500 RPM for 1 minute. Following homogenization samples were briefly centrifuged to settle the lysate. Samples were gently resuspended and incubated for 15 minutes at 65˚C and extraction was subsequently performed as per manufacturer's instructions. Extracted DNA was stored at -20˚C prior to SSR analysis. SSR genotyping. Purified DNA was thawed at 4˚C and gently vortexed prior to quantification. DNA concentration and purity were measured with a NanoDrop ND-1000 spectrophotometer (Thermo Scientific, Waltham, MA). Eleven SSR markers (Table 2) developed by Alghanim & Almirall were used for genotyping [30]. PCR amplification was performed based  [11,12]. See Fig 3. for the genotypes used in the current study.
Explant Source Young, fully expanded in vitro leaves, found no lower than 3 nodes below the shoot apex.
Young ex vitro leaves from plants grown in a controlled environment growth room.

Explant Type and
Preparation: Young leaves, cut into squares using sterile disposable scalpels.  Waltham, MA). A dye-labeled size standard (GeneScan 500-LIZ, Life Technologies, Burlington, ON, Canada) was used as the internal size standard, and PCR fragment sizes were determined using a DNA fragment analysis software (GeneMarker, SoftGenetics LLC, State College PA). SSR data processing. SSR data (available on OSF database: https://osf.io/skd2f/?view_ only=2bb948dec29a4a1db3ad4cf7eaece9bb) was analyzed and sorted using GeneMarker (Soft-Genetics LLC, State College PA). Results of the SSR allele-call analysis were organized via Microsoft Excel (Microsoft Corp., WA, USA) and imported into GraphicalGenoTyping (GGT 2.0, Wageningen University, NL) and a relative genetic distance matrix was developed to compare pair-wise distance values (available on the OSF database: https://osf.io/skd2f/?view_only= 2bb948dec29a4a1db3ad4cf7eaece9bb). This matrix was visually represented as a NJ dendrogram (Fig 3).

Experimental design and statistical analysis
Regeneration experiments were two-way cross-classified factorials with a completely random design testing two factors: genotype and media. The first experiment was a 2×2 factorial design testing two genotypes (GRC and RTG) against the previously described media MS-0 and LT-C according to the methods laid out by Lata et al. [12]. The experiment was replicated as a 10×2 two-way cross-classified factorial with the inclusion of 8 additional genotypes (U22, U31, U37, U38, U42, U61, U82, U91) in addition to GRC and RTG. Each treatment consisted of 10 experimental units (glass culture vessels; n = 10), each containing one explant (sampling unit). All statistical analyses were performed using SAS Studio software (v9.4, SAS Institute Inc., Cary, NC, USA). The ANOVA was performed using PROC GLIMMIX and a means comparison of the callus mass of responding treatments was obtained using the LSMEANS statement (α = 0.05). Missing data (due to contaminated cultures) were replaced with '.' in the dataset

SSR analysis finds the selected C. Sativa genotypes are genetically distinct
As shown in (Fig 3), the results of the SSR analysis identify all 10 genotypes as genetically unique. The genotypes are organized into three predominant clusters. As expected, the most closely related samples were found within the seed-derived lineage of RTG-X, however samples RTG-7 and RTG-8 present as outliers and lend support to the argument that Cannabis seed is highly heterogeneous. Clustering patterns also suggest genetic relatedness between U3X and RTG-X groups. The information displayed in (Fig 3) demonstrates that the material used in this study represents genetically distinct genotypes of C. sativa.

Recalcitrance of Cannabis to shoot induction medium
The aim of this study was to replicate the regeneration protocol from leaf derived callus published by Lata et al. in 2010 [11] and assess its robustness across multiple genotypes as closely as possible. However, it should be noted that some aspects of the published method could not

PLOS ONE
be accurately replicated due to a lack of detail in the original method and some regulatory restrictions, and these differences could have impacted the outcome. A comprehensive comparison of methods is presented in Table 1. In our hands, callus was successfully induced in all 10 genotypes (Fig 2C-2E), however the subsequent transfer of calli to shoot induction medium failed to initiate shoot organogenesis in any of the 10 tested genotypes (Fig 2F-2H). As such, it can be concluded that either this method is not suitable for inducing de novo regeneration across different genotypes, or that one or more of the details that could not be accurately replicated (Table 1) are critical for success. Regardless, these data highlight previous observations that Cannabis is a relatively recalcitrant species [6,9,13,22,32] and care must be taken to include multiple genotypes and detailed descriptions of experimental designs to ensure reproducible methods. When calli developed on LT-C medium was transferred to LT-S medium [12], no shoot organogenesis was observed and instead the calli declined. This was characterized by browning of medium and calli, and death within four months of transfer (Fig 2F-2H). The callus induction rate was 100% across all 10 tested genotypes grown on the LT-C medium (data available on the OSF database: https://osf.io/kevu4/?view_only=1bfc16548f10495d9a20579111a076a0), which is comparable to the callusing rate reported by Lata et al. [12]. Callus formation was observed as soon as one week after induction in the earliest genotype, with all genotypes producing callus within two weeks. All genotypes continued to grow callus during the two-month callus induction phase (Fig 2C-2E). No callus formation was observed in any leaf explants in any of the 10 genotypes cultured on the control medium (MS-0) and within 2-month of transfer onto fresh MS-0, all control explants turned brown and died (Fig 2I).
Callusing in the absence of PGRs is uncommon in Cannabis and Lata et al. (2010) [11] similarly reported no callusing on MS medium without PGRs [12]. Callus formation and appearances have previously been shown to vary across C. sativa genotypes. Early work from Mandolino & Ranalli [18] looking at the induction of embryogenic callus found that callusing was easily achieved in leaf tissues of 12 hemp genotypes. However, leaf tissues failed to regenerate in most cases, with only hypocotyls from 1 of the 12 tested genotypes regenerating [18]. Ślusarkiewicz-Jarzina et al. [3] similarly reported that callogenesis frequency and appearance varied in their screening of explant tissues for organogenic potential in 5 hemp genotypes. They reported that young leaves were most responsive to callusing with 52% of explants responding, however only 1.35% of the calli regenerated [3]. The results of our study confirm that the tested LT-C medium was more effective than previous methods at inducing callogenesis, reaching 100% response across all 10 tested genotypes. This high response rate compared to previous callogenesis studies on hemp could indicate that drug-type genotypes are more responsive to callusing than some industrial hemp genotypes, or that the medium itself is more effective, and future studies to understand how industrial hemp and drug-type genotypes vary in their callogenesis response are warranted.
Little is known about the effect of genotype on callogenesis and regeneration of drug-type C. sativa. To our knowledge, this study represents the largest attempt to replicate an existing C. sativa regeneration protocol, and expands upon the original paper's scope by incorporating 10 SSR-characterized genotypes of C. sativa. While we found that callusing was obtained on LT-C medium across all 10 tested genotypes, rates of callogenesis were genotype specific (Figs 4 &  S2). The average mass of callus differed significantly among genotypes with the most responsive, U61 producing~5.5-fold more callus than the least responsive genotype, RTG (6448 vs. 1180 milligrams: Fig 4). Callus appearance also varied across genotypes from a friable creamy colour (Fig 2C) to hard nodular green callus (Fig 2D). These differences were apparent within a month of callus induction. Callus growth persisted for the duration of the callus induction phase (2 months; Fig 2E). Our findings that callus formation is not uniform across the genotypes tested suggest that the response is not universal across C. sativa genotypes, which could also reflect regenerative capacity. Piunno et al. [5] tested regeneration potential from three drug-type genotypes and achieved callogenesis and low levels of regeneration in 2/3 of the genotypes, but was unclear from this initial report if this was de novo regeneration or proliferation of existing meristems [5]. A subsequently published study showed that shoot proliferation from C. sativa inflorescences occurs from existing meristematic tissues rather than occurring via de novo [33]. A genotype effect was also demonstrated by Wielgus et al.(2008) in industrial hemp, who demonstrated that while a callogenesis response existed across the species, the ability to regenerate was genotype specific [20]. These findings were echoed by Chaohua et al., who found that the regeneration response was partly genotype dependent [34].
High callusing levels are not uncommon in Cannabis despite low to no regeneration. It has been suggested that these high callusing levels are due to elevated levels of endogenous auxins, further supported by the strong apical dominance and rooting capacity of the species [8]. Regeneration of explants from somatic tissue requires the right auxin: cytokinin ratio. High endogenous levels of auxin may contribute to callus production across the10 tested genotypes, but no regeneration occurred; however, further research is required to evaluate this hypothesis The variability in cultivars response to MS media with TDZ for callogenesis and regeneration was recently demonstrated by Chaohua et al. [34] whose callogenesis and shoot induction protocol used MS medium supplemented with TDZ and NAA for both callogenesis and shoot induction, rather than separate callogenesis and shoot induction media as proposed by Lata et al. [12]. Chaohua et al. reported this media reduced the shoot induction period reported by Lata et al. from 2 months to 4 weeks, however rates of regeneration were considerably lower [34]. Work by Page et al. [13] has shown that the use of DKW basal salts with TDZ [35] may promote increased levels of callogenesis in some Cannabis genotypes, suggesting that the interaction between media composition and genotype may affect the formation of callus and subsequent regeneration potential. Smýkalová et al. [8] and Wróbel et al. [9] have also suggested that frequent subculture is required in order to maintain the regenerative potential of callus cultures of Cannabis; however, as no mention of subculturing during callus or shoot induction phases was made in the author's original work, they were not performed in this replication study [12].
Within 2 months of culture onto the LT-S medium calli began producing phenolic compounds in the media (Fig 2F), a response indicative of stress. It is important to note that a smaller number of explants showed a plateau in growth and no signs of stress ( Fig 2G). By 4 months on the LT-S media, most calli showed signs of necrosis and phenolic production ( Fig  2H), while those not producing phenolics were considered to be non-responsive to the shoot induction treatment as replicated from Lata et al. [12] and were destroyed. We suggest that frequent subculturing, as suggested by Smýkalová et al. [8] and Wróbel et al. [9] may have reduced the stress of cultures and helped promote regeneration in this study. While outside of the scope of this replication study, we suggest that future C. sativa regeneration studies assess the effect of subculturing on regeneration from somatic tissues.

Limitations of this study
The hallmark of a reproducible protocol is the thorough and complete reporting of the materials and methods. As has already been mentioned, efforts were made to replicate the conditions described by   [12], however; a number of critical details were omitted in the original publication, making a complete replication of the study impossible. These included the frequency of subculture (if any) during the stages of growth, light spectra used, growth conditions of the source plants, and details on explant preparation (Table 1). Light spectra have been shown to play an important role in the induction regeneration from calli in many species [36][37][38][39] and inclusion of spectral information is important to the accurate replication of a study on the induction of explant regeneration from somatic tissues (raw spectral data used in this study may be found on the OSF database at: https://osf.io/kdc72/?view_only= 5d8879ca2f2e479eb3b7635e1f6e3941). Tissue type plays an important role in regeneration and the methods presented in the 2010 protocol did not include sufficient details about the preparation of the leaf explants: neglecting to specify which tissue types, such as mid-ribs or petioles, were included in leaf explants; how the leaf explants were excised, and what position within canopy of the source plant they were collected from. As with any multi-lab replication, there are conditions which cannot be accounted for and this is particularly true for heavily regulated plants such as Cannabis. For example, the MX genotype from NIDA and the University of Mississippi used by  was omitted in this study, as it is not commercially available. Regardless of this omission, the authors of the 2010 study suggest that their methods were robust and should work for Cannabis in general [12]. However, this suggestion is inconsistent with emerging evidence from genetic, morphological and chemical studies of Cannabis showing considerable variation within commercially available Cannabis populations [15,16,40,41]. Furthermore, recent evicence has highlighted that NIDA supplied genotypes are chemically and genetically distinct from many commercially available drug-type Cannabis genotypes [14][15][16]. Together, these factors raise questions about the applicability of this protocol in commercially relevant drug-type genotypes.
Another potential cause for the observed recalcitrance could be the use of in vitro grown leaves rather than leaves collected from a controlled environment setting [12]. In vitro grown leaves were used in the present study due to legal restrictions preventing the use of greenhouse leaves in our research facilities at the time. This discrepancy could also contribute to the recalcitrance, but further research is needed. The outcome of this replication study may have also been influenced by what in vitro plant researchers have described anecdotally as "the local effect", wherein in vitro plant growth and responses vary between locations, lab environments or seasons despite the fact that they are maintained in vitro under controlled conditions. These local effects are speculated to be responsible for reducing the efficacy of well established methods when replicated in different locations. Although care was taken in the current study to closely replicate the the methods set out by   [11] it is possible that any one, or several of the differences we have highlighted (Table 1) could be critical for success and that regeneration could be achieved if they were addressed. As such, the lack of reproducibility found here could be a result of minor differences in our methodology instead of, or along with genotypic variability.
Despite these differences, we highlight that the protocol is difficult to reproduce and suggest that many genotypes of C. sativa may show recalcitrance to existing regeneration protocols. Recalcitrance of select genotypes to in vitro regeneration has been well documented across multiple agronomically important crops such as cotton, cereals and legumes and many studies have attempted to elucidate the underlying cause [42][43][44]. Despite decades of research, the factors involved in genotype specific recalcitrance in some species still elude researchers, forcing breeders to rely on backcrossing with more competent genotypes for the introduction of traits into recalcitrant cultivars of high agronomic value. As the development of future C. sativa regeneration protocols continues, incorporation of multiple genotypes is paramount to understanding the scope of recalcitrance in the species and potentially identifying responsive genotypes for breeding purposes.

Conclusion
This replication study is the first independent validation of the methods put forth by   [11] and expands beyond the scope of the original study by testing the method's replicability across 10 genetically unique drug-type Cannabis genotypes. We show that the most successful callus induction medium (MS with 1.0 μM TDZ+0.5 μM NAA) proposed by Lata et al. effectively induced callus growth in all 10 tested drug-type Cannabis genotypes, although the callus growth and quantity was found to be species-specific. Despite the successful induction of callus using their 2010 method, we were unable to successfully initiate regeneration by transferring callus to MS medium supplemented with 0.5 μM TDZ in any of the 10 tested genotypes. The failure of this part of the method, which originally reported regeneration levels exceeding 96%, raises doubts about the original authors' claims that this protocol can be used on any genotype of the species. These findings suggest that regeneration of Cannabis from somatic tissues is highly genotype specific. As new evidence emerges showing the genetic and chemical nonuniformity of the species, we suggest that the development of methods meant for the entire genus using single genotypes may no longer represent a viable path forward in Cannabis tissue culture.
Supporting information S1 Fig. Light spectrum used for in vitro growth of plant materials. A representative light spectrum of the lighting used in the controlled environment growth chamber. The average photosynthetically active radiation (PAR) over the experimental area was 48.74 ± 3.53 μmol s -1 m -2 using an OceanOptics. Average PAR was calculated using Excel ™. Full raw spectral data is available at: https://osf.io/kdc72/?view_only=5d8879ca2f2e479eb3b7635e1f6e3941.