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The nitric oxide synthase 3 G894T polymorphism associated with Alzheimer’s disease risk: a meta-analysis

The association between the G894T polymorphism (Glu298Asp) of nitric oxide synthase 3 (NOS3) and risk of Alzheimer’s disease (AD) was explored by performing a meta-analysis of case-control studies. Bibliographical searches were conducted in the MEDLINE, EMBASE, and China National Knowledge Infrastructure (CNKI) databases without any language limitations. Two investigators independently assessed abstracts for relevant studies, and reviewed all eligible studies. We adopted regrouping in accordance with the most probably appropriate genetic model. Odds ratios (ORs) with 95% confidence intervals (CIs) were used to assess the strength of this association. We performed a meta-analysis including 21 published articles with 23 case-control studies (5,670 cases and 5,046 controls). In the analyses, we found significant association between G894T polymorphism and AD risk under a complete overdominant model (GG + TT vs. GT) (OR = 1.18; 95%CI, 1.04–1.35; P = 0.010). When stratified by time of AD onset, we found the association between this polymorphism and AD susceptibility to be more substantial among late onset patients than among early onset patients (OR for late vs. early onset: 1.33 vs. 1.02, P interaction = 0.049). The meta-analysis showed that the polymorphism G894T of NOS3 was associated with risk of AD.

AD incurrence 4 . NO in endothelial cells mainly was synthesized from L-arginine by NOS3. Therefore, NOS3 may be a pivotal protein involved in a complex cascade of events in the oxidative stress.
NOS3, gene encoding for nitric oxide synthase 3, is located on chromosome 7q35 5 and has been widely studied in several AD populations. Dahiyat et al. 6 first found a significant effect of the G allele and the GG genotype of NOS3 G894T polymorphism on AD development. Subsequently, this association has been studied in many studies 7,8 , but with inconsistent findings. Therefore, we conducted a meta-analysis of the existing epidemiologic studies by using a comprehensive search strategy to determine whether there was an association between G894T polymorphism of NOS3 and risk of AD.

Material and Methods
Study selection. Methodology advocated by the MOOSE guideline was followed to perform this meta-analysis 9 . We conducted a systematically electronic search using the following terms "(Alzheimer* or AD) and (NOS* or nitric oxide synthase*) and (polymorphism* or genotype* or variant*)" in the PubMed database (from 1966 to May, 2015). We subsequently repeated this search in the EMBASE, CNKI (http://www.cnki.net) and GOOGLE Scholar (http://scholar.google.com/). Reference lists of relevant articles were reviewed manually to search for more studies.
For inclusion, studies included in the meta-analysis had to meet the following criteria: (1) studies were designed as the case-control type; (2) reported outcomes included AD; and (3) polymorphism included G894T (Glu298Asp) polymorphism. Studies were excluded if: (1) no detailed genotype frequency; and (2) insufficient information for data extraction. When multiple publications from the same patient population resource or overlapping data sets were available, only the most recent or largest sample size study was included in the meta-analysis.
Data extraction. The citations (titles and abstracts) search and data extraction were carried out independently by two reviewers, and disagreements were resolved by consensus. The following information was collected in a predefined data collection form: the first author's name, year of publication, country of origin, ethnicity, AD diagnosis method, source of controls, proportion of men in cases and controls, total number of cases and controls, mean (range) age of cases and controls, time of AD onset, and number of cases and controls with different genotypes. The quality of each study selected for inclusion in the meta-analysis was assessed by quality assessment criteria, which was derived from previously published meta-analysis of molecular association studies 10 . Total scores range from 0 to 15, with 15 being the maximum. Quality was assigned as optimal with 10-15 points and suboptimal with 0-9 points 11 .
Quality scores of studies ranged from 0 (lowest) to 15 (highest). Studies with scores ≤ 9 were categorized into low quality, while those with scores > 9 were considered as high quality 11 . Genotype based mRNA expression analysis. We used the data of NOS3 G894T genotypes from the International HapMap Project (http://hapmap.ncbi.nlm.nih.gov/) for the 209 subjects, and their corresponding mRNA expression levels data were available from SNPexp (http://app3.titan.uio.no/biotools/ help.php?app= snpexp) as described previously 12,13 . Statistical analysis. We used crude Odds ratios (ORs) with their 95% confidence intervals (CIs) to assess the strength of association between G894T polymorphism and AD risks. OR1, OR2, and OR3 were calculated for the genotypes GG vs. TT, GT vs. TT, and GG vs. GT for G894T polymorphism, respectively. The most appropriate genetic model was determined by the above pairwise differences: If OR1 = OR3 ≠ 1 and OR2 = 1, then a recessive model (GG vs. GT + TT) is suggested; If OR1 = OR2 ≠ 1 and OR3 = 1, then a dominant model (GG + GT vs. TT) is suggested; If OR2 = 1/OR3 ≠ 1 and OR1 = 1, then a complete overdominant model (GG + TT vs. GT) is suggested; If OR1 > OR2 > 1 and OR1 > OR3 > 1 (or OR1 < OR2 < 1 and OR1 < OR3 < 1), then a codominant model (GG vs. GT vs. TT) is suggested 14 . We also performed subgroup analysis according to time of AD onset, APOE ε4 polymorphism, ethnicity, HWE in controls, control population source, year of publication, and quality score, respectively.
The departure of frequencies in controls from expectation under Hardy-Weinberg equilibrium (HWE) was assessed by chi-square test. We calculated the false-positive report probability (FPRP) to evaluate the significant findings as described previously 15 . 0.2 was set as an FPRP threshold and assigned a prior probability of 0.1 to detect an odds ratio (OR) of 0.67/1.50 (protective/risk effects) for an association with genotypes under investigation. An FPRP value < 0.2 was considered as a noteworthy finding. Sensitivity analysis for the overall effect was performed by influence-analyses to evaluate whether a single or more studies might markedly affect the results 16 . Statistical heterogeneity between studies was determined by the Q-test and P < 0.05 was considered statistically significant. With lack of heterogeneity among studies, the pooled OR estimate was merged by the fixed effects model 17 . Otherwise, the random effects model was applied 18 . Publication bias was investigated with Egger's and Begg's regression asymmetry test and funnel plot 19,20 . We used independent t-test to test the differences of mRNA expression between genotypes. All statistical analyses were completed using Stata Version 11.0 (College Station, TX, USA).

Results
Studies characteristics. A total of 142 articles were achieved by literature search from the Pubmed, Embase, CNKI and other searching methods, using different combinations of key words (Fig. 1 case-control studies from 21 publications 2,6-8,21-37 including 5,670 cases and 5,046 controls were used to evaluate the association of G894T polymorphism with AD risk (Table 1). Sample sizes ranged from 102 to 1,369 (median 365). 17 studies included populations of Caucasian, and 6 of Asian. The mean ages at study for cases and controls were 71.4 years and 73.7 years, and the mean ages at onset of AD cases were 75.4 years. Fewer men were observed for all individual studies (percentages of men range from 25.6% to 100%, median was 38.4%). The criteria for AD diagnosis for 17 studies was the National Institute of Neurological Disorders and Stoke-Alzheimer Diseases and Related Disorders Association criteria (NINCDS/ADRDA criteria), 1 was used the fourth Diagnostic and Statistical Manual of Mental Disorders criteria (DSM-III-R criteria), and 5 for both. 9 studies only included late-onset AD cases, 2 for early-onset, and 12 for both. For most studies (n = 19), controls came from population-based settings, and 4 studies from hospital-based. The control group in 5 studies was not in HWE (Table 2).
When stratified by time of AD onset, we found the association between this polymorphism and AD susceptibility to be more substantial among participants with late onset of AD than among those with early onset (OR for late onset vs. early onset: 1.33 vs. 1.02, P interaction = 0.049) ( Table 3). No significant interaction were observed for ethnic descent, APOE ε 4 + /− , HWE in controls, control population source, time of publication, and quality score (all P interactions > 0.05).

Sensitivity analysis and bias diagnosis.
We did sensitivity analysis to explore whether modification of included studies in the meta-analysis could influence the overall effects, and these results were unchanged in terms of magnitude and significance. The OR (95% CI) ranged from 1.16 (1.02, 1.31) to 1.21 (1.06, 1.38), which implied no other single study affected the summary risks qualitatively. The Egger's, Begg's test, and funnel plot were performed to access the publication bias. Ultimately, Both Egger's and Begg's test revealed that no significant biases existed (P value: 0.335 and 0.597). And the funnel plot also indicated no evidence of publication bias (Fig. 3).
The mRNA expression by NOS3 G894T genotypes. The difference of mRNA expressions levels between genotypes were explored for three ethnic groups (i.e., CEU, YRI and Asian) and the total sample (Table 4). Significant higher mRNA expression was observed for individuals with GG genotype than those with GT genotype among YRIs (P = 0.007). No significant alteration in the mRNA expression levels was found for Caucasian, Asians, and total sample.

Discussion
Our meta-analysis included a total of 5,670 AD case and 5,046 control subjects from 23 published case control studies for the G894T polymorphism. The results from the meta-analysis showed that there was a significant association between the polymorphism of NOS3 and risk of AD (overdominant model: P < 0.001, OR = 1.18, 95%CI = 1.08-1.29), which contrasts with the results from previous meta-analyses 38,39 that observed a null association between the G894T polymorphism and AD risk. Several reasons may explain the different results: First, our meta-analysis included more case-control studies than the previous meta-analysis, thus our study was more powerful and the conclusion may be more reliable. Second, we selected an optimal genetic model to illustrate the inheritance in the complex disease gene by adopting an effective statistical method that did not a priori assume a genetic model and avoided the problem of multiple comparisons.
The production of basal vascular wall NO is mainly determined by the key NOS 3 enzyme 40 . NO may react with reactive oxygen species to produce peroxynitrate, which can cause oxidative stress associated with neurodegenerative diseases including Alzheimer's disease 41 . Therefore, NOS 3 enzyme involved in oxidative stress plays an important role in the pathophysiology of AD development. Evidence has been obtained showing that the G894T polymorphism in the NOS3 influences NOS3 activity and basal NO production 42,43 . Increased expression of NOS3 results in altered mitochondrial function in neurons 44 . It may be explained that the polymorphism is involved in AD development through modifying the expression of NOS 3 that caused the excessive production of NO.

First author
Year Country Ethnicity However, it might be argued that the identified association between NOS3 G894T polymorphism and AD risk is due to heterogeneity. Therefore, subgroup analyses were performed to explore the stability of the association.
It is well established that APOE є4 plays an important role in the pathogenic mechanism of AD by regulating the formation of Aβ and the APOE є4 is the only established genetic risk factor for AD 45 . Only 10 studies performed the stratification analysis to evaluate the association between NOS3 G894T polymorphism and AD risk by the APOE є4 status in the included studies. When stratified by APOE є4 status, the results from stratification analyses showed that the significant differences in genotype (overdominant model) of the polymorphism in the APOE є4(+) sample and the APOE є4(−) sample were disappeared between case group and the control group. This negative result may be because that few studies stratified by APOE є4 status were included in the meta-analysis or APOE є4 actually exerted an effect on association between NOS3 and AD. Subsequently, we performed a comparison on risk of NOS3 G894T polymorphism for AD development between APOE є4(+) group and APOE є4(−) group to explore the potential effect of APOE є4 status. However, the statistical difference for risk comparison between the two subgroup (P= 0.925) was not found, which excluded the possibility that APOE є4 status exerted an effect on association between NOS3 and AD, and speculated that the negative result may be yielded by lowed power of few included studies.
Age is very important factors for AD development. Most often, AD is diagnosed in people over 65 years of age, and every five years after the age of 65, the risk of the disease incurrence approximately doubles 46 . Moreover, some authors also reported that AD mainly affected 10% of the population with a predilection for more than 65 years 6 . Results from the stratification analysis showed that the AD risk was associated with late onset with a significant overdominant model (OR = 1.33, 95%CI = 1.07, 1.66, P = 0.01). Further, the findings from heterogeneity analysis showed that there was a statistical difference among age groups (P = 0.049). Therefore, the NOS3 G894T polymorphism may be age-dependently associated with AD risk. In fact, a possible explanation for the age-dependent association could be the different plasma homocysteine level, an important factor in AD pathogenesis, as the onset time of AD was affected by the heterologous amino acid 47 . The findings from Italian study demonstrated that plasma homocysteine levels were significantly increased in late-onset AD compared with early-onset AD 29 . Moreover, plasma homocysteine levels were closely associated with NOS3 genotype 29 . Therefore, the mechanism by which the different genotypes may affect plasma homocysteine levels may explain the age-dependent association. The different ethnic background is a well-known confounding factor in genetic studies. Variations in the frequency of NOS3 T allele among different ethnic groups have been reported. Evidence has been shown that NOS3 T allele was more common in Whites than in African Americans or Asians 48 . The results from our study showed that distribution frequency of the NOS3 T allele was 42.71-70.81% in Caucasian populations, which was lower than that in Asian populations (69.24-92.56%). However, the statistical difference was not found in Caucasian populations with an overdominant model (OR = 1.15, 95%CI = 0.99-1.34, P = 0.075) and in Asian populations with an overdominant model (OR = 1.31, 95% = 1.03-1.67, P = 0.03) for AD risk in the stratified analysis by ethnicity (P = 0.246).

P a (HWE) G/G G/T T/T G/G G/T T/T
There are some limitations: (i) we had no ability to ascertain whether studies included in our review had an adequate sample size. The Genetic Power Calculation often is a measure to evaluate the sample size in genetic analysis on association between polymorphisms and diseases while no study reported an a priori sample size calculation in the included studies. Inadequate choice of sample size may lead to chance and exaggerate (or dilute) the association between NOS3 and AD. (ii) It is a pity that the stratification by gender could not be performed in the meta-analysis because of unavailable information in the included case control studies. It is well known that the gender is as an important factor as the age, and gender-dependent genetic effects on risk of AD have been reported in many studies. Kim 50 . Therefore, it needs to explore the effect of gender on association between NOS3 and AD in the future studies. There are some strengths: (i) the association on the NOS3 polymorphism and AD has been reported in many studies; however, because of limitation of sample size, the power may be lower to assess the NOS3 G894T polymorphism and AD risk. Therefore, the meta-analysis is a good measure to explicitly explore the effect of NOS3 G894T polymorphism on the AD incurrence. (ii) we assessed studies comparing the genotype and allele distribution of NOS3 G894T polymorphism in case group with these in various control types separately because individual control types may address different questions. Hospital-based population as a control is intended to be compared with the study group as a convenience sample. However, the limitation of the hospital-based population is inability to generalize the results to other populations and yield the selection bias. In our meta-analysis, population-based control type was used in 19 of 23 studies (83%) and a significantly statistical difference was found in the subgroup analysis (P = 0.018), which suggested the ability to generalize the results to other populations. Thus, the result has a robust stability to support the association. (iii) compared to other meta-analyses, more studies with larger sample size were included to make the result powerful and an effective method for meta-analysis  of molecular association studies was adopted to pool data in a way that reflects the biology of gene effects and genetic models in our study.
In conclusion, result from our meta-analysis might provide evidence that the G894T polymorphism of NOS3 is associated with AD susceptibility, especially late onset AD susceptibility. The findings from the meta-analysis on the genetic polymorphism of NOS3 G894T may be used to potentially evaluate individual susceptibility and explore the effective measures of control and prevention for AD.