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Correlation between Activation of PI3K/AKT/mTOR Pathway and Prognosis of Breast Cancer in Chinese Women

Background Abnormal activation of PI3K/AKT/mTOR (PAM) pathway, caused by PIK3CA mutation, KRAS mutation, PTEN loss, or AKT1 mutation, is one of the most frequent signaling abnormalities in breast carcinoma. However, distribution and frequencies of mutations in PAM pathway are unclear in breast cancer patients from the mainland of China and the correlation between these mutations and breast cancer outcome remains to be identified. Methods A total of 288 patients with invasive ductal breast cancer were recruited in this study. Mutations in PIK3CA (exons 4, 9 and 20), KRAS (exon 2) and AKT1 (exon 3) were detected using Sanger sequencing. PTEN loss was measured by immunohistochemistry assay. Correlations between these genetic aberrations and clinicopathological features were analyzed. Results The frequencies of PIK3CA mutation, KRAS mutation, AKT1 mutation and PTEN loss were 15.6%, 1.8%, 4.4% and 35.3%, respectively. However, except for PTEN loss, which was tied to estrogen receptor (ER) status, these alterations were not associated with other clinicopathological features. Survival analysis demonstrated that PIK3CA mutation, PTEN loss and PAM pathway activation were not associated with disease-free survival (DFS). Subgroup analysis of patients with ER positive tumors revealed that PIK3CA mutation more strongly reduced DFS compared to wild-type PIK3CA (76.2% vs. 54.2%; P = 0.011). PIK3CA mutation was also an independent factor for bad prognosis in ER positive patients. Conclusions AKT1, KRAS and PIK3CA mutations and PTEN loss all exist in women with breast cancer in the mainland China. PIK3CA mutation may contribute to the poor outcome of ER positive breast carcinomas, providing evidence for the combination of PI3K/AKT/mTOR inhibitors and endocrine therapy.


Introduction
The PI3K/AKT/mTOR (PAM) pathway is central to the control of cell transcription, translation, migration, metabolism, proliferation and survival [1]. Epidemiological and preclinical studies have confirmed that PAM pathway plays an important role in the progression of human tumors [2], and that it is a key factor to regulate tumor angiogenesis and tumor cell metabolism. Abnormal activation of PAM pathway is one of the most common tumor-related signaling abnormalities that can be detected in a variety of tumors including breast cancer, colorectal cancer, endometrial carcinoma, lung cancer and glioblastoma [1,[3][4][5]. This abnormal activation involves multiple molecular alterations, mainly including PIK3CA mutation, PTEN loss and AKT1 mutation. In addition, KRAS mutation and BRAF mutation from the MAPK pathway can also result in PAM activation [6][7][8].
Mutation in PIK3CA, a phosphatidylinositol 3-kinase (PI3K) subunit encoding p110α, is the most frequent type of PI3K alteration. It occurs with a mutation frequency of 18-40% in breast cancer, and has mutational hot spots at E542K, E545K (exon 9), and H1047R (exon20) [9][10][11]. PIK3CA mutation enhances the activity of PI3K lipase and thus upregulates the downstream AKT activity. As a negative feedback regulating factor of PAM pathway, PTEN is absent in 25% and mutated in less than 5% breast cancer patients [12]. And also, PTEN inactivation correlates with increased phosphorylation of AKT, mTOR and S6K1. Mutation of AKT1, a downstream molecule of PI3K, occurs in 5-24% breast cancers [13]. This mutation activates AKT1 by means of PI3K-independent localization to the plasma membrane and stimulates downstream mTOR signaling [14]. Approximately 5% of breast cancer patients harbor KRAS mutations in the MAPK pathway, leading to continuous activation of PI3K [15], and the frequency of KRAS mutation is 1.56% in the COSMIC database (http://cancer.sanger.ac.uk/ cancergenome/projects/cosmic/). All of these alterations result in PAM pathway activation, which is vital for tumor development.
A preclinical study has demonstrated that PAM pathway inhibition has anti-proliferative activity in a variety of breast cancer cell lines, including HER2 over-expressing cells resistant to trastuzumab and lapatinib [16]. Currently, several agents targeted at PAM pathway have entered phase I, II or III clinical trials, including PI3K inhibitor, mTOR inhibitor, PI3K/mTOR inhibitor and AKT inhibitor. Systematic determination of molecular changes in this pathway is sure to help us understand the exact mechanism of these inhibitors and guide their clinical application. Reports on the distribution and frequency of mutations in PAM pathway are still rare in breast cancer patients from the Chinese mainland and the correlation between mutations in the pathway and outcome of breast cancer remains to be identified. Therefore, we conducted this study to determine the frequencies of PIK3CA, AKT and KRAS mutations and PTEN loss, and analyze the relationship of the mutations with clinicopathological features and prognosis.

Materials and Methods
Patients and specimens More than 9,000 patients were registered in the Breast Cancer Information Management System of West China Hospital, Sichuan University. In this study, patients with ductal breast cancer were recruited from 1084 patients, who had undergone surgery in the Department of Thyroid and Breast Surgery of West China Hospital, Sichuan University from January 2005 to May 2008. Patients (a total of 796 cases) who failed follow-up, underwent neoadjuvant chemotherapy, lacked complete clinical information or were unable to provide a sufficient amount of tumor tissue sample were excluded from the study. Thus, 288 patients were finally included. Histological diagnosis of breast cancer was confirmed by experienced pathologists at the Department of Pathology, West China Hospital, Sichuan University. Formalin fixed paraffin-embedded tumor tissues were prepared from each patient and tumor content of over 80% were confirmed. A total of 120μm of tissue sections from each case were used for DNA extraction and sequencing to detect mutations in PIK3CA (exons 4,9,20), KRAS (exon 2) and AKT1 (exon 3). Five tissue slides, 4μm for each, were prepared for PTEN loss detection. The study was approved by the independent Clinical Trials and Biomedical Ethics Special Committees, West China Hospital, Sichuan University, and written informed consent of the patients was obtained. Comprehensive postoperative treatments (chemotherapy, radiation therapy, endocrine therapy and targeted therapy) were administered according to NCCN guidelines. Clinicopathological features are summarized in Table 1. Follow-up (physical examination, blood tests, X-ray mammography, CT scan of head, chest and abdomen, and bone scintigraphy) was performed every three months within the first 2 years after surgery, and then every 6 months. The cut-off of follow-up was May 2013.
Analysis of PIK3CA, AKT1 and KRAS mutations DNA extraction from the paraffin-embedded tissue sections was performed using TIANamp FFPE DNA Kit (TIANGEN BIOTECH, Beijing, China), according to the manufacturer's instruction. PCR was performed for amplification of PIK3CA exons 4, 9, 20, AKT1 exon 3 and KRAS exon 2. The primers used are listed in Table 2. PCR products were sequenced using an ABI 3730XL sequencer. The sequencing peak chromatogram files were imported into SMD software (Sequence Mutation Detector, CapitalBio Corporation) and compared with the reference sequences of PIK3CA (accession no.NC_000003.11), AKT1 (accession no.NC_000014.8) and KRAS (accession no.NC_000012.11) in Genbank to determine mutations.

Immunohistochemistry of PTEN expression
Immunohistochemistry (IHC) for PTEN expression was performed as previously described [17]. After deparaffinization and rehydration, the tissue slides were incubated away from light in 3% H 2 O 2 solution for 15 minutes. A 40-min incubation at 98°C with Target Retrieval Solution pH 9 (EDTA, pH 9, Gene Tech, Shanghai, China) was performed in a water bath. The slides were then cooled to room temperature (for at least 30 min). Next, a 4°C overnight incubation with monoclonal mouse anti-human PTEN antibody (dilution 1:100, clone 6H2.1, Dako) was performed, followed by a 30-min incubation with peroxidase-labeled polymer conjugated to goat anti-mouse immunoglobulins (EnVision/HRP, Dako). The final step was a chromogenic reaction using 3, 3'-diaminobenzidine chromogen solution. The IHC assay for each sample was repeated 5 times. Normal breast tissues, obtained from Cancer Molecular Diagnostics Laboratory of West China Hospital, Sichuan University, served as positive controls, and homotype mouse anti-human IgGa (BioLegend) as negative control. Senior pathologists were responsible for interpretation and scoring of the IHC results. The scoring system was described previously [17]. Normal surrounding epithelium served as internal control. Tumor tissues were scored as the following: score 2 = same staining intensity as that of normal epithelium; score 1 = staining intensity weaker than normal; score 0 = no staining. We defined scores 0 and 1 as loss of PTEN.

Statistical analysis
Chi-square (χ 2 ) test and Fisher's exact test were performed to assess significance of the association between variables (PIK3CA, AKT, KRAS mutations and PTEN loss in breast cancer tissues) and clinical characteristics. Kaplan-Meier survival curve was drawn and tested by Logrank test to evaluate the differences in disease-free survival between the variables. The effect of mutations on prognosis was analyzed by univariate and COX multivariate risk models. Statistical difference was defined as P<0.05.

Clinicopathological characteristics
The clinicopathological characteristics of the 288 cases of sporadic breast cancer were listed in Table 1. Median follow up duration was 66 months (range, 3-87 months). Out of the 288 PIK3CA, AKT and KRAS mutations and PTEN loss in 288 sporadic breast cancer patients PIK3CA, AKT, KRAS mutation and PTEN loss rates are shown in Table 3. One specimen carried PIK3CA gene double mutations in exon 9 and exon 20. The IHC scoring based on PTEN expression assessed for 278 patients showed 51 cases of score 0, 47 cases of score 1, and 180 cases of score 2 ( Fig. 1). The other 10 cases fell into failure of staining or nonassessable results. PTEN loss (scores 0 and 1) occurred in 35.3% of sporadic breast cancer patients, including 4 who presented with both PTEN loss and PIK3CA mutation. By defining that mutation in PIK3CA, AKT1 or KRAS, or loss of PTEN expression will lead to PAM pathway activation, 146 of the 288 patients were discovered to have PAM activation in their tumors. The correlation between clinicopathological characteristics and overall PAM activation, PIK3CA mutation and PTEN loss is presented in Table 4. PAM pathway activation and  Fig. 2D). Univariate and multivariate analysis of 152 ER positive breast cancer patients (the baseline was summarized in Table 5) revealed that PIK3CA mutation was an independent predictive factor for worse prognosis (Table 6).

Mutation frequencies in relapsed patients and relapse-free patients
We further conducted subgroup analysis and compared the mutation frequencies in 48 patients who relapsed within 3 years after surgery and 75 patients who were relapse-free over 6 years. Table 7 presents basic clinicopathological information of the two groups. The relapsed patients appeared to have larger tumor size and higher positive hormone receptor rate, but they were not significantly different from relapse-free patients in other clinicopathological features. Mutation rates of PIK3CA and PIK3CA/AKT/KRAS were statistically higher in the relapsed subgroup than that in the relapse-free subgroup, but there was no significant difference in PTEN loss between the two subgroups. Further analysis of the 48 relapsed patients revealed that  (Table 8).

Discussion
PAM pathway is central to the control of cell growth, migration and survival. Given the fact that abnormal activation of PAM pathway closely correlates with the efficacy of medical treatment for breast carcinoma including endocrine therapy, anti-HER2 therapy and chemotherapy, research in this area is clinically important. In the present study, the mutation rate of PIK3CA in breast carcinoma was 15.6% (39/250), lower than that reported in white [9,18] and Japanese populations [19]. In agreement with literature, our study also found that PIK3CA mutations occurred at hot spots E545K and H1047R. The mutation rate of KRAS and AKT in our study was 1.8% and 4.4%, respectively, again consistent with that in the literature. However, in our patients, the mutation rate of PIK3CA in the ER positive breast cancer patients was found to be only 15.8% (24/152), which is significantly lower than that of 28-47% in the literature [9,13,20,21]. This observation might be potentially attributed to ethic differences. PAM pathway plays an important role in resistance to anti-HER2 therapy in HER2-positive breast cancer. In early or advanced HER2-positive breast cancer, PIK3CA mutation or PAM pathway activation is associated with poor prognosis [22][23][24]. We chose 33 cases of HER-2 positive breast cancer frozen tissue (18 cases with Lumina B like, 15 cases with HER2-positive type) for sequencing of 58 exons of the mTOR gene (next generation sequencing, Ion Torrent), nevertheless mutations that could cause an amino acid change were not found (data not shown). Indeed, mTOR is a key downstream molecule of the PAM pathway, and the mutation rate of the mTOR gene is extremely rare in the reported data. In the COSMIC database, mTOR mutation was found in 20 breast cancers; moreover, the frequency of mTOR mutation was only 2.45% in all types of tumors that have been reported. Therefore, a larger number of samples with statistical significance are required in order to determine the role of mTOR mutation in PAM pathway activation.
Loss of PTEN can also activate the PAM pathway. The occurrence of PTEN loss is approximately 25% in breast cancers. In ER positive tumors, it reaches 37-44% [20,25,26]. The relationship of this mutation to clinicopathological markers and prognosis remains unknown, but it was found to have a correlation with lymph node involvement, loss of ER staining, higher tumor grade, TNM staging and disease-related death [27,28]. Loss of PTEN was associated with shorter relapse-free survival in Tamoxifen-treated ER positive patients [26]; however, most of the research did not reveal an association between PTEN loss and prognosis. In addition, Iqbal et al reported that loss of PTEN protein predicted early recurrence in triple-negative breast cancer [29]. In the present study, the rate of PTEN loss was 35.3%, and PTEN loss was associated with ER status. We did not find an association between PTEN loss and prognosis in 54 triple-negative breast cancers (data not shown).
It was found that PIK3CA mutation was associated with ER positive, small size, negative HER2 status [20], but correlation between this mutation and patient prognosis is still to be determined. Actually, the effect of PIK3CA mutation on the prognosis of breast cancer should be assessed according to different cancer molecular subtypes. The relationship between PIK3CA mutation and outcome of ER positive breast cancer remains unclear. It had been reported that PIK3CA mutation was associated with better outcome in ER positive breast cancer [19][20][21]. But in other reports this association did not exist [13]. Li et al found that patients with PIK3CA mutation had a poorer outcome in ER positive breast cancer [30]. Studies have found that exon 20, encoding the kinase domain, was tied to the prognosis of patients; and exon 9, coding helical domains, was not associated with patients' outcome [21]. When exon 9 and exon 20 were analyzed together, PIK3CA mutation was not associated with prognosis in ER positive breast cancer patients [31]. But subgroup analysis revealed that PIK3CA mutants had a similar survival compared to the good-prognosis, low-proliferative subgroup (P>0.05) and a better outcome compared with the poor-prognosis, highly proliferative subtype (P<0.05) [31]. The present study indicated that ER positive breast cancer patients with PIK3CA mutation had poorer outcome. Univariate and multivariate analysis confirmed that this mutation is an independent adverse prognostic factor in ER positive breast carcinoma (57 cases with Lumina A like, 95 cases with Lumina B like). These results suggest that PIK3CA mutation may contribute to poor outcome or failure of medical treatment in ER positive early breast cancer patients. Subsequently, we further analyzed our results between the 48 patients with poorer prognosis (relapsed within 3 years after surgery) and the 75 patients with better outcome (over 6 years of relapse-free). It was found that mutation rates of PIK3CA and KRAS/PIK3CA/AKT in recurrent patients were significantly higher than those in relapse-free patients. In addition, PIK3CA and KRAS/PIK3CA/AKT mutations appeared to occur more frequently in hormone receptor or ER positive relapsed patients. All the results further validated that activation of PAM pathway correlates with poor outcome in ER positive cancers, indicating that ER positive breast cancer patients harboring these mutations are likely to have a poorer prognosis. In clinical practice, about 40% of patients failed to respond to or were resistant to routine endocrine therapy [32]. Resistance to endocrine therapy is a long process of accumulation, which might be affected by many factors. Increasing attention is paid to the connection between endocrine therapy resistance and the increased expression or signaling overaction of growth factor receptor pathways, including PAM [33]. Both preclinical and clinical studies indicated that resistance to endocrine therapy might be reversed by PAM pathway inhibitors. mTORC1 activates ER by a non-hormone-dependent mode [34]. Estradiol inhibits apoptosis by blocking PI3K/mTOR [35]. Endocrine-resistant breast cancer cells were found to carry high PAM pathway activation [36]. These studies revealed the interaction between ER and the PAM pathway, and this might explain why PIK3CA mutation only affected the ER positive patient population, but not the ER negative patients. In vitro, everolimus combined with tamoxifen, fulvestrant, letrozole in ER positive breast cancer cells showed a synergistic effect [37]. The results of BOLERO-2 showed that in hormone receptor positive advanced breast cancer, everolimus in combination with exemestane significantly improved PFS [38]. The present study confirmed that the PAM pathway is excessively activated in relapsed hormone receptor or ER positive breast cancer patients, suggesting that PAM pathway activation may contribute to the failure of endocrine treatment and that PAM pathway inhibitors may reverse endocrine therapy resistance, providing evidence for the combination of PAM pathway inhibitors and hormonal therapy.
Based on survival analysis of the PIK3CA mutation, AKT1 mutation, KRAS mutation and PTEN loss in the 152 ER positive breast cancer patients, we found that only PIK3CA mutation was a predictive factor. Furthermore, PAM activation in ER positive patients was not shown to  at other loci and their effects on prognosis are still to be studied. Third, we did not use paired normal tissue or blood samples as controls in this study, we relied upon the background information from previous studies to ensure that the mutations found were real, because as this was a retrospective study, normal control tissues had not been stored and were therefore unavailable. In addition, the relationship between mutations and molecular subtype of breast cancer and the internal molecular mechanism remains to be further elucidated.
In conclusion, this is the first study to investigate PAM pathway alterations in sporadic breast cancer in China. Results of the study preliminarily showed that PIK3CA mutation predicts outcome of ER positive tumors, providing biomolecular evidence for the combination use of PI3K inhibitors and endocrine therapy.