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Migration dynamics of juvenile southern bluefin tuna

Large scale migrations are a key component of the life history of many marine species. We quantified the annual migration cycle of juvenile southern bluefin tuna (Thunnus maccoyii; SBT) and spatiotemporal variability in this cycle, based on a multi-decadal electronic tagging dataset. Behaviour-switching models allowed for the identification of cohesive areas of residency and classified the temporal sequence of movements within a migration cycle from austral summer foraging grounds in the Great Australian Bight (GAB) to winter foraging grounds in the Indian Ocean and Tasman Sea and back to the GAB. Although specific regions within the Indian Ocean were frequented, individuals did not always return to the same area in consecutive years. Outward migrations from the GAB were typically longer than return migrations back to the GAB. The timing of individual arrivals to the GAB, which may be driven by seasonality in prey availability, was more cohesive than the timing of departures from the GAB, which may be subject to the physiological condition of SBT. A valuable fishery for SBT operates in the GAB, as do a number of scientific research programs designed to monitor SBT for management purposes; thus, understanding SBT migration to and from the area is of high importance to a number of stakeholders.

juvenile SBT to: characterize movement rates conditional on behavioural state (resident or migrating); quantify the extent and synchronicity of the migrations of individuals to and from the GAB; and determine key areas of residency and, by association, potentially important habitat. The GAB supports a valuable large-scale fishery for SBT, as well as a number of scientific research programs designed to monitor SBT for international management purposes (Hillary et al. 18 ). Thus, understanding SBT migration to and from the area is of high importance to an international fishery, and more broadly, it contributes to a better understanding of the entire region, which is one of Australia's most valuable marine ecosystems 19 .

Results
Behavioural classification of movement. The movements from 110 individual juvenile SBT were estimated spanning the period 1998-2011. Cyclic migrations were a defining feature of all estimated archival tag tracks ( Fig. 1) with a total of 44 full cycles describing movements outwards and back to the GAB recorded from tags at liberty for a year or more. Only one individual migrated westwards into the Indian Ocean (IO) and remained there for the subsequent summer period rather than returning to the GAB. Juvenile SBT ventured large distances from the GAB (mean 4,262 km, SD 2,181 km, maximum distance 10,251 km) in both westerly and easterly directions (Fig. 1A). The duration of each migration from and back to the GAB varied substantially between individual SBT and ranged from 61-481 days (mean 172 days, SD 89 days). Hidden Markov models (HMMs) showed cyclical migrations in all years of the data set (Fig. 1B).
Individuals demonstrated considerable variability in migratory patterns between years (Fig. 1B). For example, one SBT tagged at age 2 made four return migrations between the GAB and the IO across the period 2006-2010, travelling as far west as approximately 80°E (Fig. 2). Its migrations away from the GAB during the first two years were rapid and directed, punctuated by periods of residency before similarly rapid migrations eastwards were initiated. After the first two years of tag deployment, the behaviour of this individual changed: less time was spent in the GAB during the summer period across 2007/08 and 2008/09. Similar patterns were also observed in other long term deployments (Fig. 1B) and indicate that, as juvenile SBT age, they progressively spend less time in the shelf waters of the GAB. Also, in its third and fourth years after tagging, rather than departing the GAB and heading west into the IO as per the previous two years, this SBT moved east and into the Tasman Sea for a period before then heading west into the IO (Fig. 2). This westward migration was also punctuated by a higher occurrence of periods of residence than in the first two years of the deployment. Although this particular fish migrated further west in its second year after tagging than the next two, individuals typically showed greater maximum westward movement in later (older) years of multi-year tag deployments relative to earlier (younger) periods, with the average western-most longitude visited increasing almost linearly with age from 122.7°E at age 1 to 54.4°E at age 6. This trend of increased westward and southward extent of migrations with age was apparent throughout the data-set (see Fig. S5, Table S3). Overall the SBT shown in Fig. 2  HMMs classified SBT as being in a resident mode for nearly 60% of the time observed, with outward migrations from the GAB containing more periods of residence than inward migrations to the GAB (Table 1). There was a high persistence within a state ( Fig. 3) with >90% probability of remaining in the current state between two consecutive steps. Run lengths within states showed similar distributions -typically <10 movement stepsalthough the resident mode had a predominance of longer run lengths (Fig. 3). Although quite variable, the time individuals were classified as migrating demonstrated a positive relationship with the maximum distance to the GAB (Fig. 3), suggesting that the further individual SBT roam from the GAB, the more time they spend migrating. On leaving the GAB, most juvenile SBT (84%) moved westwards into the IO rather than eastwards towards the Tasman Sea. Average distances within movement mode were estimated to be 25% higher during movements away from the GAB compared to return movements (Table 1), but with high variance relative to mean movement distance. Residency in the GAB was generally confined to the first 150 days of the calendar year with departure dates of individuals being highly variable. Departures generally began in February with overall residency in the GAB starting to decline by the end of March (Fig. 4).
The numbers of juvenile SBT returning to the GAB increased from November, peaking in December-January and continuing through to March (Fig. 4), reflecting the extended period of residency associated with the GAB. There was evidence of a secondary peak in return times to the GAB in May but this may be due to increased variability through reduced sample sizes (N = 44 return dates). The departure of juvenile SBT from the GAB began in late February and early March and trailed off into September (Fig. 4). There was some evidence of a secondary peak in departures in July. Although there were more observations of departures, as the large majority of tags were released in the GAB (N = 131), the sample sizes were relatively small and further data is required to determine whether there is finer structure in GAB departure and arrival dates. There was little evidence of a relationship with age and the timing of departure and arrival in the GAB ( Supplementary Fig. S6).

Areas of residence and relationships with habitat descriptors.
Examining only the east-west components of movement with respect to time of year shows the clear residency period in the GAB followed by a propensity to move to longitudes between 70-100°E (Fig. 5A). Kernel density estimation refined this general    Table 1. The proportion of time spent in each behavioural state, associated interquartile range (IQR) and state dependent distribution parameters (mean and standard deviation (SD)) estimated by the hidden Markov model based on all estimated tracks from tagged juvenile southern bluefin tuna.
pattern and identified three areas associated with residency of juvenile SBT in the eastern IO (north EIO), western GAB and central GAB. For comparison we also considered habitat in adjacent areas of the southern EIO, the upwelling area along the Bonney coastline in western Victoria, which is an area of locally high productivity, and the Tasman Sea (Fig. 5). Juvenile SBT in our dataset were absent from the Tasman Sea in summer despite this being, historically, an area of high summer catches of SBT via a surface purse seine fishery 12 and also an important winter residence area for sub-adult and adult SBT 20,21 .  Productivity in all residency regions demonstrated a clear seasonal cycle, with productivity in the north and south EIO areas tending to be reduced relative to other residency areas ( Supplementary Fig. S4). The GAB consistently had higher surface chlorophyll maximums and a stronger seasonal cycle in comparison to the other residency areas, with maxima occurring during the austral winter. Chlorophyll maximums in the GAB were also out of phase with the three most distant residency areas, with maxima in the north EIO, south EIO and Tasman Sea tending to occur across the austral spring and summer months. Of all areas, the magnitude of the seasonal signal in surface productivity was lowest in the north EIO.
Mean sea surface temperatures (SST) were more temporally consistent between regions (Fig. 6). If we consider the central GAB (CGAB) as the "core" summer region for juvenile SBT, and compare SST from the CGAB with  the EIO and Tasman Sea, the south EIO was on average (across all years and months) 4.3 °C cooler (SD = 0.61 °C), the north EIO was on average 1.7 °C warmer (SD = 0.67 °C), and the Tasman Sea was on average 0.75 °C cooler (SD = 0.43 °C) than the CGAB (Fig. 6). While the SBT tagged in this study are all juvenile, there were substantial changes in size over the age classes contained in this data (ages 1-6). The spatial distribution changed accordingly with SBT progressively migrating further west and into cooler water as they aged (Supplementary Materials Fig. S5, Table S3).
In contrast to younger (age 1) SBT, which remained year round in the highest productivity shelf waters 22 within and to the west of the GAB (Supplementary Materials Fig. S5), older fish showed more complex patterns with regard to productivity. Juvenile SBT aged 2+ were resident in the GAB during periods of lower productivity and higher SST when compared to productivity and SST in other areas, and absent from the GAB during the period when the GAB's highest surface measurements of chlorophyll were observed (Figs 6 and S4). During their migrations to the IO, juvenile SBT encountered a range of SST conditions that varied predictably with latitude. Periods of residence in the IO were characterized by lower surface productivity and cooler temperatures than those of the GAB at the same time. Individuals migrating into the Tasman Sea appeared to experience relatively consistent SST and chlorophyll surface conditions when compared with other areas.

Discussion
The migration and distribution patterns presented here show that, in common with other large animals utilizing temperate latitudes, juvenile SBT undertake long distance migrations. Where SBT, like other bluefin, are perhaps atypical, is that these zonal cyclic migrations are specific to juveniles, and there is no obvious latitudinal (meridional) component that could be associated with seasonal temperature. Nor did we find evidence of correlation with environmental drivers such as SST and surface chlorophyll that have been found to be important in migration for other species. While many juvenile SBT were observed to consistently migrate to key areas, such as the central IO during winter, individuals were observed to vary where they spent their winter period from year to year and even within a year. A number of individuals were observed to spend one winter in the IO and the next in the Tasman Sea or even displaying periods of residence in both locations within the same winter period. Similarly, the departure and arrival dates of juvenile SBT to and from the GAB differed markedly between individuals. Yet despite this variability between individuals, juvenile SBT consistently return to the GAB over the age-classes tagged, even if they spend subsequent winters in different oceanic regions. In addition, their summer spatial usage within the GAB is relatively stable across the two decades for which electronic tagging data has been collected. There was evidence of reduced usage of the GAB during summer in the age 5+ SBT, which is consistent with the notion of the thermal niche of SBT with growth.
The estimated differences in speed of inward and outward movement (Table 1) may result from a higher searching time (and therefore a need to cover greater distances) required when locating inter-annually variable winter foraging grounds. Inward migrations to the GAB, being a return to a "known" and geographically confined region, may require less search effort and, in association, the need to cover lower distances in the annual movement cycle.
Unlike many other migrating species, such as 23,24 that demonstrate remarkably synchronized timing of movements, the dates at which individual SBT departed and returned to the GAB were highly variable. This suggests that the cues for juvenile SBT to depart from, or return to, the GAB may be related to environmental variability rather than fixed cues such as day-length. For a fast growing, immature but, ultimately large, ocean predator, such as juvenile SBT, identifying abundant food sources and maximizing growth is likely to be the key driver of their behaviour. If movements are related to prey availability, then movements may be triggered by declines in prey at the current location, or anticipation of higher prey levels at the destination.
The duration or spatial extent of residency did not directly coincide with seasonal cycles in surface primary productivity. Areas where SBT were predominantly in resident mode were consistently associated with low surface productivity, a finding that is consistent with previous studies on SBT 17 , but inconsistent with studies on other bluefin tunas where movements were found to track seasonal productivity maxima 25,26 . Several explanations are possible. First, it is possible, that juvenile SBT, being visual predators, prefer to hunt their prey in clear waters away from areas of high turbidity associated with high levels of primary productivity [27][28][29] . Second, the energy transfer from primary to intermediate levels in the food web of pelagic predators, such as SBT, involves a time lag. As intermediate trophic species increase in abundance, resources of primary species are consumed and decline in abundance and, as a result, the presence of higher order predators may be offset from high levels of primary productivity 30,31 . Third, areas of concentrated productivity are likely to operate at smaller spatial scales than those at the scale that residency associations were investigated. Eastern parts of the GAB and the area of the Bonney coastline east of the GAB are areas of seasonal coastal upwelling driven by south-easterly winds primarily during the austral summer and autumn, leading to enhanced phytoplankton biomass 32 . These upwelling features tend to be spatially limited and may only operate across short temporal scales of only a few days 33,34 . Finally, satellite-derived indices of productivity only provide an indication of productivity in the surface waters. Productivity maxima in the GAB are often at depth 34 , suggesting that total productivity may not be highly correlated with satellite measurements. In other regions, the distributions of pelagic predators such as tuna have been associated with physical features of the ocean such as bathymetry, frontal features and subsurface structure of the water column 28,35 . It may be more appropriate to investigate the interaction between this sort of physical features and sub-surface water-masses, rather than indicators of surface primary productivity as potential drivers of large-scale migration patterns.
A number of seasonal populations of small pelagic fish have been observed to occur in the GAB. A large fishery primarily targeting Australian sardine or pilchard (Sardinops sagax) occurs in the region throughout the austral summer and early autumn months when the species is spawning [36][37][38] . This coincides with when juvenile SBT are in the GAB and populations of these species almost certainly provide an important seasonal prey resource for SBT 37,38 . Consumption of spawning, energy-rich small pelagic fish may result in faster growth for juvenile SBT than might be attained by foraging on equivalent or greater biomass of alternative prey sources elsewhere. Once these energy-rich prey conclude spawning, migration to areas outside the GAB may be favored. Studies on Pacific and Atlantic bluefin tuna support this hypothesis 39,40 , suggesting specialization on high calorie forage species such as sardine, herring and anchovy when abundant. However, little is known of the diet of juvenile SBT outside of the GAB, with the small amount of information available suggesting that their diet is more varied in areas outside the GAB 41 . A better understanding of the intermediate trophic links and the efficiency of trophic transfer from primary production into SBT prey species, as well as measures of prey ingestion and body condition during their residence within the GAB, might provide greater insight into the drivers of residence and migration behaviours.
Thermal regimes could also be important for growth and may provide additional drivers for the seasonal utilization of the GAB by juvenile SBT. Growth studies of juvenile SBT have shown that a large proportion of annual growth occurs over the months when fish are likely in the GAB 42 . This could indicate that higher temperatures infer physiological benefits, via enhanced digestive throughput 43 , without imposing metabolic costs. Quantitative assessments of the influence of water temperature on growth rates and digestion in tunas are largely lacking 44,45 , with most understanding of the influence of temperature on growth based on modelling approaches.
Patterns of historical fisheries exploitation of the species may also play a role in determining residence areas observed. Reduction in the average recruitment associated with overfishing and the depleted state of the stock 46 has likely impacted the distribution of juvenile SBT. Data from the scientific aerial survey used to monitor recruitment to the stock since the early 1990s 47 revealed juveniles are largely confined to the shelf waters and away from the western GAB. This distribution was particularly evident during a period of historically low recruitments from the late 1990s through to around 2007. In the years after 2007, the distribution started to expand, with the distribution in 2010 and 2013-2016 being similar to the period of higher average recruitment prior to the late 1990s. Recent years have seen indications of relatively strong recruitment 48 . Should this trend continue, the associated increase in the abundance of juvenile SBT may result in changes to the distribution of this component of the population.

Conclusions
This paper has described the characteristics of the annual migration of juvenile SBT, showing alternating patterns of residence and migratory behavior. Our results provide important insights into the variability of migration behaviours between individuals within the same time period and within individuals across multiple years. The proximate drivers for these long-distance migrations remains unclear. Evolutionary arguments would suggest that SBT migrations are an evolved response to seasonal changes in resources. The complexity of migration routes, their timing and apparent mismatch to indices of ocean temperature and surface productivity suggests that greater understanding of the diet of juvenile SBT, the associated distribution of prey fields and their relationships to not only the marine environment, but the physiology of individuals, is required. Only with this understanding will the drivers of such a large scale migration and its fitness gains when compared to adopting a more resident strategy be revealed. Geolocation, the process of estimating position from light data collected by each archival tag, was performed using a state-space modelling approach detailed in 49 and following the general methodology detailed in 50,51 . The likelihood surfaces generated were then input to a grid-based HMM incorporating sea surface temperature and maximum depth to estimate a "most probable track" for each animal (see Supplementary Material). The outputs from the HMM were treated as locations for input to the behaviour switching models described next.

Methods
Hidden Markov models of migration. Hidden Markov Models (HMMs) 52,53 were used to estimate when individuals were migrating (directed fast movement covering large distances) and when individuals were resident (undirected slow movement with localized movements).
The longitudes estimated by the geolocation process and associated estimated tracks indicated that juvenile SBT undertake primarily east-west migrations within a relatively limited latitudinal range. The model used distance from a central location (32°S, 130°E) in the GAB (d GAB ) as a point of reference to determine whether SBT were resident (with no directed movement away from or toward the GAB), migrating outwards (i.e. demonstrating consistent increasing d GAB ) or undertaking a return migration (i.e. consistent decreasing d GAB ).
We constructed three-state HMMs, with latent states labelled (1) "resident", (2) "outward migration" and (3) "inward migration". We assume that the probabilities of switching from one state to another are constant over time, so that = − x Px t t 1 where the transition matrix P is defined as π π π π π π π =                  P 0 0 Here π i,j is the probability of moving from state i to state j. This transition matrix implies that individuals can go from the resident state to either of the migratory states, or remain resident. When in a migratory state, individuals can only remain in that state or transition to resident. Transitions between the two migratory states can only be via the resident state, but note this can occur after a single-time-step. Because the values in each row must sum to one, e.g., π π π = − − 1 1, 3 1 ,1 1,2 , this means only four parameters in the transition matrix need to be estimated. For those individuals that only made a migration in one direction (primarily because individuals were caught or their tag failed prior to return to the GAB), a two-state model (with resident and migration states only) was used. In this case, the transition matrix was a 2 × 2 matrix containing only the first two rows and columns of P above.
For the observation model, the likelihood function g(.) is given by a normal distribution with state-specific mean μ i and variance σ 2 , for example for state i and distance moved d t : μ σ πσ = Categorization and examination of migratory behaviour. Categorization of movements into the three states allowed for the calculation of: (i) time spent in each state; (ii) the run length of each state (time spent consecutively in each behavioural state); (iii) the proportion of the tagged fish in each behavioural state as a function of day of year; (iv) timing of the initiation of migration away from the GAB (as day of the year); (v) timing of the return of each individual to the GAB (as day of the year). The spatial distribution of behaviours was also mapped along the estimated track of each individual providing for an aggregate picture of intra-annual migration behaviours. Non parametric smoothing splines were used to detect annual trends 54 .
Because individual tracks of SBT can comprise resident periods interspersed with periods of migration, tracks were divided into "trips" based on a threshold of moving 500 km from the central GAB locus (chosen at 32°S, 130°E, as described above). Position estimates within this radius were classified as being within the GAB. We adopted the criteria that the beginning of a consecutive run of 120 positions where d GAB > 500 km was the departure date and the return was the date at which d GAB < 500 km. Empirical circular density distributions 55 were used to examine annual timing or departure and return of SBT to the GAB.
Association between areas of residence and environmental parameters. We applied kernel density estimation 56 to the mode of locations classified as resident to create a map of the core residence locations of SBT throughout their range. These were then used to guide extractions of remotely sensed values of SST and chlorophyll-a, as an indicator of productivity (see Supplementary Material). Once extracted, the characteristics of the ocean environment (based on SST and chlorophyll-a) were compared between areas of residence, and their relationship with residency behaviour in SBT examined.