{'fraction_non_alphanumeric': 0.03496140758569176, 'fraction_numerical': 0.02757490248153374, 'mean_word_length': 5.051858362631843, 'pattern_counts': {'":': 0, '<': 2, '<?xml version=': 0, '>': 1, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
Temperature and pH control on lipid composition of silica sinters from diverse hot springs in the Taupo Volcanic Zone, New Zealand

Microbial adaptations to environmental extremes, including high temperature and low pH conditions typical of geothermal settings, are of interest in astrobiology and origin of life investigations. The lipid biomarkers preserved in silica deposits associated with six geothermal areas in the Taupo Volcanic Zone were investigated and variations in lipid composition as a function of temperature and pH were assessed. Lipid analyses reveal highly variable abundances and distributions, reflecting community composition as well as adaptations to extremes of pH and temperature. Biomarker profiles reveal three distinct microbial assemblages across the sites: the first in Champagne Pool and Loop Road, the second in Orakei Korako, Opaheke and Ngatamariki, and the third in Rotokawa. Similar lipid distributions are observed in sinters from physicochemically similar springs. Furthermore, correlation between lipid distributions and geothermal conditions is observed. The ratio of archaeol to bacterial diether abundance, bacterial diether average chain length, degree of GDGT cyclisation and C31 and C32 hopanoic acid indices typically increase with temperature. At lower pH, the ratio of archaeol to bacterial diethers, degree of GDGT cyclisation and C31 and C32 hopanoic acid indices are typically higher. No trends in fatty acid distributions with temperature or pH are evident, likely reflecting overprinting due to population influences.


Introduction
The study of geothermal environments and their microbial inhabitants is crucial to unravelling the origins and diversification of life on Earth and the discovery of life elsewhere in the universe (e.g. Stetter 1996). Geothermal systems are populated by diverse and deeply branching thermophilic and hyperthermophilic bacteria and archaea, occurring as planktonic cells in geothermal fluids, and as biofilms and biomats on the surfaces of, and encased within, mineral deposits. Of particular interest are geothermal silica sinters which form rapidly, through abiogenic and biogenic processes, preserving a chemical signature of the local microbial community. Silica deposits and associated microbiology have been studied in hot springs from diverse settings, including Yellowstone National Park, USA (Jahnke et al. 2001;Guidry and Chafetz 2003;Pepe-Ranney et al. 2012), Krisuvik, Iceland (Schultzelam et al. 1995;Konhauser et al. 2001;Tobler and Benning 2011) and the Taupo Volcanic Zone (TVZ), New Zealand (Jones et al. 2001;Mountain et al. 2003;Pancost et al. 2005, Childs et al. 2008Kaur et al. 2011a, b).
The diverse and characteristic hydrocarbon structures of lipids have a high preservation potential and are entrained Abstract Microbial adaptations to environmental extremes, including high temperature and low pH conditions typical of geothermal settings, are of interest in astrobiology and origin of life investigations. The lipid biomarkers preserved in silica deposits associated with six geothermal areas in the Taupo Volcanic Zone were investigated and variations in lipid composition as a function of temperature and pH were assessed. Lipid analyses reveal highly variable abundances and distributions, reflecting community composition as well as adaptations to extremes of pH and temperature. Biomarker profiles reveal three distinct microbial assemblages across the sites: the first in Champagne Pool and Loop Road, the second in Orakei Korako, Opaheke and Ngatamariki, and the third in Rotokawa. Similar lipid distributions are observed in sinters from physicochemically similar springs. Furthermore, correlation between lipid distributions and geothermal conditions is observed. The ratio of archaeol to bacterial diether abundance, bacterial diether average chain length, with information on biological diversity, environmental conditions and post-depositional alteration history. Cyclisation and methylation, especially within membrane lipids (and their hydrocarbon derivatives), in addition to structural variations in heterocompounds (e.g. terpenoids) are well preserved throughout geological time, and thus represent high-priority targets for early life and astrobiological investigations (Simoneit 2002). Several workers have utilised archaeal and bacterial lipid distributions and carbon isotopic compositions to characterise communities in a range of microbialites (Pancost et al. 2001;Thiel et al. 2001), and to profile mat-building organisms in geothermal systems (Zeng et al. 1992a, b;van der Meer et al. 2000;Jahnke et al. 2004). Moreover, our recent work confirmed the preservation of a wide range of diagnostic lipid biomarkers in geothermal silica sinters and demonstrated their potential in the reconstruction of geothermal microbiology Kaur et al. 2008Kaur et al. , 2011a.
Microbial diversity in geothermal settings is fundamentally controlled by the maximum temperature and pH limits of organisms and the environmental conditions (Brock 1978). Although some bacteria are well adapted for survival at extremes of temperature and pH (Brock 1978;Zeng et al. 1992a, b;Rothschild and Mancinelli 2001), Archaea tend to predominate at high temperatures and low pH (Robertson et al. 2005). There is also extensive evidence that environmental conditions can directly influence lipid biosynthesis (Gliozzi et al. 1983;Rothschild and Mancinelli 2001;Schouten et al. 2007), via homeoviscous and homeoproton permeability adaptations to maintain membrane integrity at environmental extremes (Sinensky 1974;Hazel 1995, Albers et al. 2000. For example, at low pH levels, acidophiles modify their lipid composition (e.g. by incorporating membrane-spanning tetraether lipids, Macalady et al. 2004) to maintain a high pH gradient across the cell membrane and the same cytoplasm pH as their mesophilic relatives. To maintain optimal membrane fluidity at high temperatures, thermophiles adjust the membrane lipid composition, incorporating structural motifs that yield more thermally stable membranes (e.g. saturated and long chain fatty acids, Shen et al. 1970; tetraether lipids with cyclopentyl moieties, Gliozzi et al. 1983). Moreover, the ether bonds in archaeal and some bacterial membrane lipids are more stable since they are less readily hydrolysable, particularly under high temperature and low pH. While the effect of temperature and pH on the lipid composition of cultured microorganisms is well documented, little is known on the effect of such conditions on lipid compositions in complex geothermal communities.
In this paper, we examine the lipids preserved in silica sinters associated with six distinct geothermal areas in the TVZ, and assess the relationship between geothermal environment-specifically temperature and pH-and lipid composition. We hypothesise that different environmental conditions will result in distinct lipid profiles reflecting changes in microbial assemblage and/or homeoviscous adaptations.

Site and sample description
Sinters were collected from six active geothermal systems in the TVZ (Fig. 1). The environmental conditions associated with the analysed sinters are given in Table 1 with further details on the different sites summarised below.

Champagne Pool
Champagne Pool is located in the Waiotapu geothermal system. The pool water is anoxic and of a mildly acid chloride type, with a pH of 5.5 and a constant temperature of approximately 75 °C. It is supersaturated with respect to amorphous silica (430 mg kg −1 SiO 2 ; Mountain et al. 2003) and has relatively high H 2 S concentrations. It also contains a wide array of trace elements, including Au, Ag, Sb, W and As (Jones et al. 2001 (Kaur et al. 2011a). These samples represent newly formed sinter (<10 year old). Comparisons were made with sinter (WT1) from previous studies . WT1 was also sampled from Champagne Pool and comprised subaqueous domal stromatolite and subaerial spicular sinter .

Opaheke Pool
Opaheke spring is located in the Reporoa Caldera situated approximately 6 km south of the Waiotapu geothermal field. These two fields are believed to be hydrologically linked (Nairn et al. 1994). Water temperature here is approximately 98 °C, with a pH of 7.2 and 270 mg kg −1 SiO 2 . Two active sinters were collected from the edge of Opaheke Pool, OP2 and OP3. These samples were collected from different regions of the pool, where a small temperature difference is measured (OP2 90 °C, OP3 98 °C). The pH at both sites is 7.2.

Loop Road
Loop Road hot springs are situated in a flat, low-lying alluvial plain, a few kilometres south of Waiotapu. LRa1-LRa4 were sampled from active spicular silica sinter from the margins of a Loop Road hot spring. Water temperature is approximately 70 °C and has a pH of 5.6.

Orakei Korako
The Orakei Korako geothermal region is approximately 2 km 2 in area and is located on the eastern margin of the Moroa Volcanic Centre. The waters here are near neutral chloride with high bicarbonate concentrations (Mountain et al. 2003). OK1 was sampled from the edge of Fred and Maggie Pool, whilst OK2 and OK3 were sampled from the outflow channel, where a temperature drop of approximately 15 °C every 10 m was observed. The pool has a temperature of 98 °C and a pH of 7.0. OK1D, discussed in previous studies , originates from Diamond Geyser which has a temperature of 78 °C and a pH of 9.0.

Rotokawa
The Sinter Flat area of Rotokawa is a cluster of geothermal springs on the northern margin of Lake Rotokawa that have created a flat terrace, mostly covered in hot pools (Krupp and Seward 1990). Geothermal pools in this region are generally of the acid-sulphate type (Krupp and Seward 1990). Samples were collected from an ebullient hot spring along the northeast margin of the sinter flat. The water temperature was approximately 85 °C in the centre of the pool and dropped to about 60 °C over several metres as the water flowed out in a thin sheet <1 cm in depth. RK1F (80 °C, pH 2.5; Pancost et al. 2005Pancost et al. , 2006, composed of spicular silica microstromatolites, was collected from this spring, whereas RK6A (82 °C, pH 3.7; Pancost et al. 2005Pancost et al. , 2006 was collected from the south shore of the main upflow zone. The outflow of the Rotokawa hot spring is host to numerous isolated microstromatolites, composed of a multitude of laminations (Mountain et al. 2003). The microstromatolites appear to have grown simultaneously, each from a pumice core, growing outwards and upwards creating coral-shaped structures (Mountain et al. 2003). One of these structures, RK1a (75 °C, pH 2.8), was sampled from the outflow of the hot spring.

Ngatamariki
The Ngatamariki geothermal field is located 15 km northeast of Wairakei and 7 km south-east of Orakei Korako (Fig. 1), covering an area of approximately 10 km 2 . 1 3 NGM-49 was sampled from a hot spring in the Ngatamariki field. The spring has a temperature of 93.4 °C and a pH of 6.7.

Lipid analysis
Samples were extracted with dichloromethane (DCM)/ MeOH (1:1 v/v) prior to work-up, to remove surface contamination and external biofilms such that the compounds identified likely derived from microorganisms encased in the silica matrix . Lipids were present in these extracts, but in lower abundance than in the samples, suggesting that background contamination of the latter was minimal. Samples were dried, ground to fine powder and sequentially extracted by sonication using DCM, DCM/MeOH (1:1 v/v) and MeOH. Activated Cu turnings were added to the extracts, which were left for 24 h to remove elemental sulphur. An aliquot (50 %) of the total extract was fractionated using aminopropyl solid phase extraction (SPE) columns (Phenomenex; NH 2 , 500 mg, 6 ml). The fractions were eluted sequentially with DCM/isopropanol (12 ml, 2:1 v/v; neutral fraction containing hydrocarbons, bacterial diethers, archaeol, GDGTs), 5 % acetic acid in ether (12 ml; acid fraction containing free fatty acids, hopanoic acids) and MeOH (24 ml, polar and inferred phospholipid and glycolipid fraction). Subsequently, 5α-androstane and hexadecan-2-ol (200 ng) were added to the neutral fraction as internal standards. This fraction was then separated into neutral apolar (containing hydrocarbons) and neutral polar (containing alcohols, bacterial diethers, archaeol, GDGTs) fractions by elution through an activated Al 2 O 3 column with hexane/DCM (9:1 v/v) and DCM/MeOH (1:2 v/v), respectively. The glycolipid and phospholipid fatty acid components were released by saponification. The acid and polar fractions were heated (1 h) with fresh 0.5 M 95 % methanolic NaOH (1 ml) at 70 °C. The hydrolysed mixture was left to cool and acidified to pH 1-2 with 1 M HCl (ca. 1 ml) and extracted with hexane (3 × 2 ml). The combined extracts were evaporated under N 2 . The fatty acids were methylated using BF 3 /MeOH (100 μl) at 70 °C for 1 h. After cooling, double-distilled water (1 ml) was added. The methyl esters were extracted with DCM (3 × 2 ml) and the combined extracts dried under N 2 . The fatty acid methyl esters (FAMEs) were dissolved in DCM (ca. 1 ml) and eluted through a pre-washed anhydrous Na 2 SO 4 column to remove residual water. A n-C 19 standard was added and the fractions were dried under N 2 . Neutral polar and methylated acid and polar fractions were derivatised with pyridine (25 μl) and bis(trimethylsilyl)trifluoroacetamide (BSTFA; 25 μl, 70 °C, 1 h) to convert OH groups into trimethylsilyl derivatives.

Gas chromatography (GC) and GC-mass spectrometry (GC-MS)
Samples were analysed using a Carlo Erba Instrument HRGC 5300 Megaseries gas chromatograph equipped with a Chrompack CP SIL-5CB column (50 m × 0.32 mm i.d., 0.12 μm film, dimethylpolysiloxane equivalent) and a flame ionisation detector. H 2 was used as carrier gas, and samples were injected at 70 °C with a temperature programme of 20 °C min −1 -130 °C and 4 °C min −1 -300 °C (held 25 min). GC-MS was performed using a Thermo Finnigan Trace gas chromatograph interfaced to a Trace mass spectrometer. The GC column and temperature programme were as above. Electron impact ionisation (70 eV) was used, and full scan spectra were obtained by scanning m/z 50-800 at 1 scan s −1 . The limits of detection vary amongst compound class but typically range from 10 to 100 ng g −1 (dw).

Liquid chromatography-MS (LC-MS)
Samples were analysed using high-performance liquid chromatography/atmospheric pressure chemical ionisation-MS (HPLC/APCI-MS) based on a procedure modified from Hopmans et al. (2000) using an Agilent 1100 series/ Hewlett-Packard 1100 MSD series instrument equipped with an autoinjector and Chemstation software. Separation was achieved with a Prevail Cyano column (2.1 mm i.d. × 150 mm, 3 μm; Alltech) at 30 °C. Typical injection volume was 10 μl. Glycerol dialkyl glycerol tetraethers (GDGTs) were eluted isocratically with 99 % hexane and 1 % isopropanol for 5 min, followed by a linear gradient to 1.6 % isopropanol for 40 min. Flow rate was 0.2 ml/min. After each analysis, the column was cleaned by back-flushing hexane/propanol (95:5, v/v) at 0.2 ml/min for 10 min. Detection was achieved using positive ion APCI. Conditions for the Agilent 1100 APCI-MS instrument were: nebulizer pressure 60 psi, vaporiser temperature 400 °C, drying gas (N 2 ) flow 6 l/min and temperature 200 °C, capillary voltage −3.5 kV, corona current 5 μA. Positive ion spectra were generated by scanning from m/z 900 to 1400.

Champagne Pool
The likely sources of lipids in the Champagne Pool sinters are discussed in detail in Kaur et al. 2011a. Briefly, bacterial non-isoprenoidal diethers were attributed to Thermodesulfobacteriales (Thermodesulfbacterium hydrogeniphilum) and Aquificales (Venenivibrio stagnispumantis) ( Table 2), consistent with DNA analyses of Champagne Pool sinters and waters (Hetzer et al. 2007;Childs et al. 2008), whereas archaeol and GDGTs were attributed to Sulfolobales (Sulfurisphaera ohwakuensis) and/or Thermofilum-like populations ( Table 2; Hetzer et al. 2007). Lowmolecular weight (LMW) fatty acids have a range of potential sources, although branched fatty acids were attributed to Thermodesulfobacteriales (Langworthy et al. 1983). Neither Aquificales nor Thermodesulfobacteriales are known to synthesise hopanoids; instead these compounds have been attributed to a Bacillales and Burkholderiales source (Gibson et al. 2014).

Loop Road
The Loop Road spring sinters contain a variety of archaeal and bacterial lipids, which can be used to tentatively define the microbial community structure. The bacterial lipids are characterised by the predominance of diethers, particularly the C 17 /C 18 and C 18 /C 18 components, and an absence of monoethers. A variety of fatty acids (including branched, unsaturated and hydroxylated components) and hopanoids, present in a range of stereoisomers, were also identified. Archaeal lipids include archaeol and GDGTs, with a predominance of tetraethers lacking cyclopentyl moieties. This biomarker assemblage is similar to that observed in the active Champagne Pool sinters (Table 2). Indeed, preliminary bacterial DNA analyses of Loop Road spring reveal the presence of Aquificales and Thermodesulfobacteriales (Stott, personal communication), the main bacterial orders identified in Champagne Pool. The dialkyl glycerol diethers predominant in the Loop Road sinters likely derive from Aquificales and Thermodesulfobacteriales. The fatty acids can be attributed to multiple sources; however, the LMW branched-chain components (i-C 15:0 and a-C 15:0 , and i-C 17:0 and a-C 17:0 ) are most likely of a thermodesulfobacterial origin (Langworthy et al. 1983), while the LMW unsaturated components (specifically C 18:1 ) likely derive from Aquificales (Jahnke et al. 2001). Hopanoids are also detected in the Loop Road sinters; their origin remains unclear, possibly deriving from an anaerobic organism, given the anoxic waters, or from an aerobic microbial strain living near the air-water interface. Archaeal lipids in the Loop Road sinters include archaeol and GDGTs. Archaeol is ubiquitous in the Loop Road sinters, suggesting a significant contribution from archaea. The lack of cyclopentane-bearing GDGTs and the predominance of the acyclic GDGT suggest a euryarchaeotal source (Schouten et al. 2007).

Opaheke spring
The Opaheke spring sinters are characterised by a predominance of bacterial diethers, particularly the C 18 /C 18 and C 18 /C 19 components. Monoethers, fatty acids (including branched, unsaturated and hydroxylated components) and various hopanoids were also identified. Archaeal lipids comprise archaeol and GDGTs, with a predominance of tetraethers bearing 3 or 4 cyclopentane rings. Dialkyl glycerol diethers are predominant membrane lipids in thermophilic bacteria including the Aquificales (Huber et al. 1992), Ammonifex degensii (Huber et al. 1996) and Thermodesulfobacterium commune (Langworthy et al. 1983). The high temperature of this system is inconsistent with a Thermodesulfobacteriales or Ammonifex degensii source (Wagner and Wiegel 2008), suggesting an Aquificales origin (Table 2). Previous studies reveal different alkyl chain distributions for different Aquificales cultures: Huber et al. (1992) reported C 16 /C 16 , C 17 /C 17 and C 17 /C 18 as the dominant diethers in Aquifex pyrophilus (optimum growth 85 °C, pH 6.8), whereas Jahnke et al. (2001) reported C 18 /C 18 , C 18 /C 20 and C 18 /C 21:1 as the main components in a range of Aquificales cultures including Aquifex aeolicus, Aquifex pyrophilus and Thermocrinis ruber (85 °C, pH 6.8). The distribution observed here, dominated by the C 18 /C 18 and C 18 /C 19 components, appears to fall between these two end members. The presence of additional biomarkers for Aquificales, such as monoethers, is consistent with an Aquificales origin (Jahnke et al. 2001).
The fatty acids identified in the Opaheke sinters likely derive from multiple sources: high-molecular weight (HMW) components deriving from both plant and bacterial sources and LMW fatty acids (i.e. C 14 -C 20 ) deriving from a variety of bacterial sources. LMW unsaturated components such as C 18:1 can be attributed to an Aquificales source (Jahnke et al. 2001), while branched-chain fatty acids, i-C 15:0 and a-C 15:0 , and i-C 17:0 and a-C 17:0 , can derive from diverse sources including sulphate-reducing bacteria and Gram-positive bacteria (Langworthy et al. 1983;Zelles 1999). β-OH fatty acids are associated with the lipopolysaccharides of Gram-negative bacteria, but can also be present as the fatty acyl components of PLFAs (Zelles 1999). Hopanoids, although present in subordinate abundance, are also detected in the Opaheke sinters; the source of these compounds is unclear. Bacteriohopanepolyols (biological precursors of hopanoids) of inferred cyanobacterial and methanotrophic bacterial origin were previously detected in an inactive sinter from Opaheke spring (Gibson et al. 2008). In this study, the high temperature of the active system is inconsistent with a cyanobacterial source, and the hopanoic acids possibly derive from methanotrophic bacteria.
Archaeal lipids in the Opaheke sinters include archaeol and GDGTs. Archaeol is present in abundances comparable to the other compounds in these sinters, indicating a significant contribution from archaea. The tetraethers are dominated by components bearing 3 or 4 cyclopentane rings. GDGTs with 0-4 cyclopentane moieties are dominant in (hyper)thermophilic Crenarchaeota and Euryarchaeota, including the crenarchaeotal order Thermoproteales (Schouten et al. 2007), whereas those bearing 4-8 cyclopentane rings are relatively uncommon and likely derive from the euryarchaeotal order Thermoplasmatales and the crenarchaeotal order Sulfolobales (Schouten et al. 2007). Thus, the archaeal GDGT distributions in these sinters are consistent with a range of Crenarchaeota and Euryarchaeota sources.

Orakei Korako
A range of bacterial and archaeal biomarkers were detected in the sinters from Fred and Maggie Pool and its outflow channel. Dominant bacterial biomarkers include free fatty acids, inferred 1,2-diacylglycerophospholipids, bacterial diethers, monoethers and various hopanoids. Archaeal lipids include archaeol and GDGTs. This biomarker assemblage is similar to that observed in the Opaheke sinters (Sect. "Opaheke spring"; Table 2), and can be used to tentatively define the microbial community structure (Table 2). Previous lipid analyses of sinter from Diamond Geyser in Orakei Korako (OK1D), revealed the presence of C 18 , C 20 and C 20:1 monoethers, biomarkers inferred to derive largely from Aquificales . Members of this order represent bacteria with the highest growth temperatures, with Aquifex pyrophilus having an upper growth temperature of 95 °C (Wagner and Wiegel 2008). Indeed, the bacterial ether lipids present here, specifically the C 18 / C 19 diether and C 18 and C 20 monoethers, and the physical conditions at Fred and Maggie Pool are consistent with an Aquificales source. The LMW alkanoic acids observed likely derive from a mixing of various bacterial sources. However, C 18:0 , C 18:1 and C 20:1 fatty acids have been identified in a variety of Aquificales cultures (Jahnke et al. 2001), and in the Orakei Korako sinters these compounds could derive from these organisms, consistent with ether lipid analyses and previous studies . The LMW branched-chain fatty acids and the hopanoic acids, however, likely derive from an alternate bacterial source since Aquificales are not known to synthesise these compounds. Indeed, Talbot et al. (2005) detected bacteriohopanetetrol and bacteriohopanepentol in a previous study of OK1D, and attributed these compounds to a cyanobacterial origin.
Archaeal lipids in the Orakei Korako sinters include archaeol and GDGTs. Archaeol occurs in concentrations comparable to those of the bacterial ether lipids, suggesting a significant contribution from archaea, consistent with the high water temperature at this site. In addition, a range of GDGTs was observed, with a predominance of components bearing 0-4 cyclopentane rings, suggesting a euryarchaeotal and/or crenarchaeotal origin; however, the specific sources are unclear (Schouten et al. 2007). Biomarkers for cyanobacteria (e.g. n-alkenes and monomethyl alkanes) were also detected, albeit in subordinate abundance. Since the temperature at Fred and Maggie Pool is considerably higher than the maximum growth temperatures for cyanobacteria (73 °C), these biomarkers likely represent an allochthonous cyanobacterial input from the surrounding sinter flat.
Ngatamariki NGM-49 contains a range of archaeal and bacterial lipids. Bacterial lipids include free fatty acids (mostly LMW saturated and unsaturated components), inferred 1,2-diacylglycerophospholipids, hopanoids, monoethers and a suite of non-isoprenoidal diethers. As discussed in Sect. "Opaheke spring", diethers in the presence of monoethers suggest an Aquificales source . Members of the Aquificales order represent bacteria with the highest growth temperatures (Wagner and Wiegel 2008). The bacterial ether lipids detected here, specifically the C 17 /C 18 and C 18 / C 18 diethers and C 18 and C 20 monoethers, in addition to the high water temperature at Ngatamariki are all consistent with an Aquificales origin. The LMW fatty acids (i.e. C 14 -C 20 ) derive from a variety of bacterial sources; however, it is possible that the C 18:0 , C 18:1 and C 20:1 fatty acids detected here also derive from Aquificales (Jahnke et al. 2001). The hopanoids likely derive from an alternate unknown bacterial source.
Archaeal lipids detected include archaeol and GDGTs. Archaeol is once again present in concentrations comparable to the bacterial ether lipids, consistent with the high temperature at this site. A range of GDGTs were also detected, with a predominance of tetraethers bearing 3 or 4 cyclopentane rings, suggesting a crenarchaeotal and/or euryarchaeotal source (Schouten et al. 2007). This biomarker assemblage is similar to that observed in the physicochemically similar Orakei Korako (OK1) and Opaheke sinters (Table 2).

Rotokawa
The Rotokawa stromatolite (RK1a) contains a range of archaeal and bacterial lipids, including free fatty acids, inferred 1,2-diacylglycerophospholipids, various hopanoids, archaeol and GDGTs. In previously analysed sinters, RK1F and RK6A, bacterial non-isoprenoidal diethers and macrocyclic diethers were also detected . Preliminary DNA analyses reveal Aquificales (Hydrogenobaculum) and Thermoprotei (Sulfolobus and Sulfurisphaera) in a variety of Rotokawa hot springs (Stott, personal communication). The bacterial diether lipids in RK1F and RK6A most likely derive from Aquificales; the source of the macrocyclic analogues remains unknown, but likely deriving from a thermoacidophilic source . The fatty acids identified in the stromatolite likely derive from multiple sources: HMW components deriving from both plant and bacterial sources, consistent with carbon isotopic values recorded by Pancost et al. (2005), and LMW fatty acids (i.e. C 14 -C 20 ) deriving from a variety of bacterial sources. Hopanoids were also detected in a range of stereoisomers, albeit in subordinate abundance; the source of these compounds is unclear. The predominance of GDGTs bearing 0-4 cyclopentane rings and the conditions at Rotokawa spring are also consistent with a thermoacidophilic Thermoprotei source (Perevalova et al. 2010).

Summary
The overall biomarker profiles reveal three diverse assemblages across the TVZ sites, correlating with three distinct geochemical environments: the first in the Champagne Pool and Loop Road sinters (slightly acidic, ~70 °C), the second in the Orakei Korako, Opaheke and Ngatamariki sinters (neutral pH, ≥90 °C), and the third in the sinters from Rotokawa (highly acidic, ~80 °C). This suggests that comparable temperature and pH conditions, even across different settings, result in similar microbial communities and subsequently similar biomarker distributions.

Bacterial diether lipids
A range of bacterial diether lipids comprising straightchain non-isoprenoidal alkyl components were identified in the geothermal sinters, with their respective alkyl components tentatively identified on the basis of retention times and mass spectra (Pancost et al. 2001. Nonisoprenoidal diethers have been identified in a variety of marine (Pancost et al. 2001;Bouloubassi et al. 2006) and terrestrial environments, including geothermal sinters from the TVZ  and in Yellowstone National Park (Zeng et al. 1992a, b;Jahnke et al. 2001). Total bacterial diether abundances range from 0.031 in OK2 to 2.7 mg g −1 TOC in CPa1 (Table 3; note that for samples RK1a, RK1F, RK6A, RK020211-1, PK020211-1, WT1, OK1D and NGM-49, TOC-normalised abundances are unavailable; distributions are comparable and are discussed subsequently). Total diether lipid concentrations exhibit no correlation with temperature or pH (Fig. 2a, b). If the range of samples is restricted to hot springs with a pH in the range 5.5-7.2, there is still no correlation of diether concentration with temperature. Furthermore, no correlation with pH is apparent when samples are restricted to those within the temperature range of 68-82 °C.
In contrast, relationships between bacterial diether average chain length (ACL) and both temperature and pH are apparent (Fig. 3a-d). For the entire dataset, the correlation between diether ACL and temperature is poor (Fig. 3a). This is partly due to the very low diether ACLs in the Rotokawa sinters (characterised by low pH), high diether ACLs in the Diamond Geyser sinter (characterised by high pH), and the varying diether ACLs from the Orakei Korako outflow channel. Although the latter do increase with temperature, the relationship is different from that of the larger data set (Fig. 3a), perhaps arising from the different hydrological regime-narrow outflow channels with fast flowing waters as opposed to pools. Removing the extreme pH samples and the Orakei Korako outflow samples results in a much stronger relationship (Fig. 3c).
For the entire dataset, a weak correlation between diether ACL and pH is observed (R 2 = 0.48, Fig. 3b). The outliers comprise a high diether ACL in sinter from Fred and Maggie Pool (characterised by high temperature) and varying diether ACLs in sinters from its outflow channel, likely reflecting the different hydrological regime. Removing the extreme temperature sinters and Orakei Korako outflow samples results in a much stronger correlation between diether ACL and pH (R 2 = 0.79, Fig. 3d).
Different organisms appear to have significantly different distributions of non-isoprenoidal diethers; for example, Jahnke et al. (2001) reported C 18 /C 18 , C 18 /C 20 and C 18 /C 21:1 as the main components in Aquificales cultures, while Langworthy et al. (1983) identified C 16 /C 16 , C 16 / C 17 , C 17 /C 17 , C 17 /C 18 , C 18 /C 18 as the principle diethers in Thermodesulfotobacterium commune, although we note that these were also grown under different temperatures (85 and 65 °C, respectively, but the same pH 6.8). Thus, at least some of the observed variation in these sinters could reflect differences in the microbial community. Nonetheless, the correlation of diether ACL with temperature suggests that there could be a partial environmental control. Although little is known about the role of bacterial diethers in homeoviscous adaptation, the acyl chain length of phospholipids has been shown to increase at higher growth temperatures (e.g. Russell 1984), and a similar effect could occur for the bacterial diethers. Higher molecular weight diethers would have higher thermostabilities, helping to maintain optimal membrane fluidity at higher temperatures and this could explain the observed high diether ACL at elevated temperatures. Previous researchers have also reported an increase in fatty acid acyl chain length at lower pH (Drici-Cachon et al. 1996), and a similar effect might be expected for diether ACLs. However, the opposite is observed in this work, with higher diether ACLs associated with sinters deposited under neutral rather than acidic pH. This could reflect a different role for diether lipids in regulating membrane stability than that played by glycerol acyl lipids; however, it is likely to reflect the different inferred community assemblages in the different pools governing the relationship shown in Fig. 3d.

Archaeol
Archaeol is widely distributed amongst archaea (DeRosa and Gambacorta 1988), and has been previously identified in geothermal environments (Ward et al. 1985;Pancost et al. 2005Pancost et al. , 2006. The abundance of archaeol in the silica sinters is highly variable ranging from 0.008 in CPa3 to 0.86 mg g −1 TOC in OP2 (Table 3). Archaeol is typically less abundant than the bacterial diethers, except in the most acidic sinters (see below). Archaeol concentrations exhibit no trend with temperature or pH (Fig. 2), and similarly no correlation is observed between pH or temperature and archaeol to bacterial diether ratios (Fig. 4a, b; Table 3). However, with respect to temperature, this lack of correlation is largely due to the very high ratio in one acidic Rotokawa sample. If this and other pH extreme samples are excluded, a correlation between the archaeol to bacterial diether ratio and temperature is apparent, with ratios generally increasing with temperature (Fig. 4c).
No strong correlation is observed between this ratio and pH in either the entire or temperature-constrained datasets (Fig. 4b, d); however, the highest concentrations of archaeol relative to the bacterial diethers do occur in the most acidic sinters, RK1F, RK1a, RK020211-1 and PK020211-1 (Table 3). In the latter three, this arises from the absence of non-isoprenoidal diethers. High archaeol abundances and archaeol to bacterial diether ratios were also noted in our previous study for a sinter deposited under acidic conditions at Champagne Pool (Kaur et al. 2011a). Archaea, well adapted to survival at extremes, tend to predominate over bacteria at high temperatures and low pH (Robertson et al. 2005), likely explaining these observations. It is intriguing that these relationships persist even when focussing on a subset of the bacterial population (i.e. diether producers) that are also adapted to environmental extremes. Indeed, Reysenbach et al. (2005) reported the survival of only one genus of Aquificales in acidic conditions (Hydrogenobaculum), which could account for the high relative archaeol concentrations observed in these sinters.

GDGTs
Isoprenoid glycerol dialkyl glycerol tetraethers (GDGTs) are the predominant membrane lipids of hyperthermophilic archaea and have been identified in geothermal sinters, mats and sediment (Ward et al. 1985;Zhang et al. 2006;Pancost et al. 2006;Schouten et al. 2007). However, they are not exclusive to these organisms and have also been observed in non-thermophilic environments Weijers et al. 2006). Previous studies reveal that thermophilic archaea respond to high temperature and low pH conditions by increasing the ratio of GDGTs to diethers, and the proportion of GDGTs with cyclopentyl moieties in their membranes (Gliozzi et al. 1983). These components help stabilise the cell membrane, maintaining optimal membrane fluidity and reducing proton permeability (Albers et al. 2000). A selection of sinters was analysed for GDGTs but concentrations were not determined. A range of isoprenoid tetraether lipids, with a total number of cyclopentyl rings ranging from 0 to 8, was identified on the basis of retention times and mass spectra. From previous biomarker classes, it is clear that by constraining the temperature and pH ranges, distribution trends become more apparent, and this is the approach taken for GDGT and subsequent comparisons. GDGT distributions correlate with both temperature and pH (Fig. 5). For a given pH range (5.5-7.2), the average number of cyclopentyl rings in the biphytanyl chains typically increases with temperature (Fig. 5a). Distributions also vary with pH; for a given temperature range (68-82 °C), the average number of cyclopentane rings is significantly higher in the Rotokawa sinters, which precipitated in much more acidic waters (Fig. 5b). These distribution trends could reflect variations in microbial assemblage due to the varying environmental conditions. This is particularly true for the observed pH relationship given the fact that it is largely driven by differences between the Rotokawa sinters from all the others. Biomarker distributions from Champagne Pool and Loop Road suggest similar microbial populations at these sites as do the distributions at Orakei Korako, Opaheke and Ngatamariki, such that the relationships between the number of cyclopentane rings and  Fig. 3 Bacterial diether ACL versus a temperature and b pH. In c, diether ACLs have been plotted against temperature where samples have been restricted to those from hot springs with a pH range of 5.5-7.2; in d diether ACLs have been plotted against pH where samples have been restricted to those associated with a temperature range of 68-82 °C temperature within those respective groups likely reflect homeoviscous adaptive responses.

Fatty acids
Fatty acids are important constituents of bacterial and eukaryotic cell membranes and are, therefore, ubiquitous in terrestrial and marine settings (e.g. Zelles 1999;Zhang et al. 2005;Bouloubassi et al. 2006). Fatty acids have previously been identified in geothermal environments, including silica deposits and microbial mats (Shiea et al. 1991;Jahnke et al. 2001;Pancost et al. 2005Pancost et al. , 2006Zhang et al. 2007). The effect of temperature on the structures and distributions of fatty acids has been well documented. Studies reveal that thermophilic microorganisms tend to increase their average fatty acid chain length (Weerkamp and Heinen 1972;Oshima and Miyagawa 1974;Russell 1984), decrease the degree of unsaturation and degree of branching (Daron 1970;Ray et al. 1971;McElhaney and Souza 1976), and increase the ratio of iso to anteiso branched fatty acids (Shen et al. 1970;Oshima and Miyagawa 1974), in response to elevated temperatures.
The concentrations and distribution of the fatty acids vary considerably in the sinters analysed. Total concentrations of the bacterial fatty acids (C 14 -C 20 ) range from 0.44 in LRa3 to 16.8 mg g −1 TOC in OK1 (Table 4). Total fatty acid concentrations are highly variable and show no relationship with temperature or pH (Table 4). Furthermore, no trends in the fatty acid ACL and the proportions of branched and unsaturated fatty acids with temperature and pH are evident (Table 4; Fig. 6a-d). There is a low positive correlation between the C 17 iso to anteiso ratio and temperature and pH, albeit with low R 2 values (0.37 and 0.36, respectively) (Fig. 6e, f). Nonetheless, clustering of samples within a particular site is evident (Fig. 6a-f). For example, all Champagne Pool samples exhibit high fatty acid ACLs, whereas sinters  (Fig. 6a, b), despite the similar temperature and pH conditions of these pools. Furthermore, Loop Road samples have significantly higher proportions of branched fatty acids than those from Champagne Pool (Fig. 6c, d). This suggests that the setting and thus the microbial assemblage are the major controls on fatty acid distributions. We argued above that the similarity of biomarkers' assemblages was evidence for similar microbiological communities at particular hot springs. However, fatty acids are ubiquitous in bacteria and have low biological specificity; thus, the observed distributions likely record the mixing of a much more complex range of bacterial inputs than that recorded by the more taxonomically restricted ether lipids. In this case, even subtle variations in microbial community structure could obscure any effect of temperature and pH on fatty acid composition. Although controls on fatty acid distributions in the geothermal sinters are clearly complex, it is critical to recognise that fatty acid ACLs > 18 are uncommon in mesophilic environments and even geothermal environments characterised by   (Shen et al. 1970). Thus, high ACLs, such as those observed at Champagne Pool, are likely due to high temperatures. However, more subtle variations will be difficult to detect and the Loop Road, Rotokawa and Opaheke data clearly indicate that low ACLs are not necessarily indicative of low temperature environments.

Hopanoic acids
Hopanoids are pentacyclic triterpenoids and membrane components of a variety of bacteria, including cyanobacteria, methanotrophs and aerobic heterotrophic bacteria (Rohmer et al. 1984;Farrimond et al. 2000), as well as some anaerobic bacteria ( Fig. 6 Fatty acid ACL versus a temperature and b pH; proportion of branched components versus c temperature and d pH; C 17 iso to anteiso fatty acid ratio versus e temperature and f pH. For variations with temperature, samples have been limited to those with pH in the range 5.5-7.2; for variations with pH, samples have been limited to those within the temperature range 68-82 °C Fischer et al. 2005). They occur in a range of settings, including geothermal environments, and have been identified in silica sinters and microbial mats (Talbot et al. 2005;Pancost et al. 2005Pancost et al. , 2006Zhang et al. 2007;Gibson et al. 2008Gibson et al. , 2014. Previous studies reveal that total hopanoid abundance increases with growth temperature in the thermoacidophilic bacterium Alicyclobacillus acidocaldarius (Poralla et al. 1984), the ethanologenic Zymomonas mobilis (Schmidt et al. 1986), and an acetic acid bacterium Frateuria aurantia (Joyeux et al. 2004). Hopanoids regulate membrane fluidity and have been argued to induce order in the phospholipid membrane (Kannenberg and Poralla 1999), such that higher hopanoid abundances would act to stabilise the membrane at higher temperatures. Joyeux et al. (2004) also reported the biosynthesis of penta-functionalised hopanoids in response to thermal stress in Frateuria aurantia, which produced higher amounts of C 31 hydroxylated hopanoids (derived from pentafunctionalised bacteriohopanoids) at higher growth temperatures. More recently, Welander et al. (2009) demonstrated that hopanoids play a role in maintaining membrane integrity and pH homeostasis in a study of a hopanoid deletion mutant in Rhodopseudomonas palustris TIE-1. In this study, the mutant strain, no longer able to produce hopanoids, displayed increased membrane permeability and sensitivity to acidic and alkaline conditions relative to the wild-type strain.
A range of hopanoic acids (C 30 -C 34 ) was identified in the geothermal silica sinters. These compounds typically derive from the oxidative cleavage of vicinal diols in bacteriohopanoids (Rohmer et al. 1984;Farrimond et al. 2000). Total hopanoic acid abundances are highly variable in the geothermal sinters, ranging from 0.0043 in CPa3 to 1.2 mg g −1 (TOC) in OK1 and LRa1 (Table 5). As with the other biomarker classes, concentrations exhibit no relationship with temperature or pH (Table 5). In contrast, their distributions vary significantly between the sinters and in some instances appear to be related to environmental conditions. For example, even though the C 31 /C 32 hopanoid ratio shows no correlation with temperature (Fig. 7a), at lower pH conditions it is typically higher (Fig. 7b). Given the very different inferred microbial assemblages at Rotokawa, it is difficult to assess whether the higher ratios at lower pH are a result of adaptive responses or a change in community composition.
The hopanoids are also present as a range of stereoisomers in the silica sinters. The biological 17β,21β(H) isomer is typically dominant, but the more thermally stable 17α,21β(H) and 17β,21α(H) isomers are also present and differences in their distributions are evident. The C 31 and C 32 indices, defined as the (αβ + βα)/ββ ratio, are both typically elevated at high temperature and low pH (Fig. 7cf). Although Rosa-Putra et al. (2001) demonstrated the de novo synthesis of 17α,21β(H) hopanoids in Frankia strains; in these settings, the thermally stable isomers are likely alteration products of biological precursors. The stereochemical transformation of the biological 17β,21β(H) configuration to the 17α,21β(H) and 17β,21α(H) configurations is directly related to high temperature and low pH conditions (Peters and Moldowan 1991;Pancost et al. 2003). This is consistent with the generally elevated C 31 and C 32 indices at higher temperatures and lower pH, demonstrating its potential use as an environmental indicator. Crucially, these transformations are post-mortem chemical changes and, therefore, unlikely to be affected by differences in microbial community structure.

Conclusions
The abundances and distributions of lipid biomarkers are highly variable in the geothermal silica sinters from the TVZ and can be used to tentatively define microbial community structure. Biomarker profiles reveal three distinct microbial assemblages corresponding to three diverse geochemical environments: the first in the Champagne Pool and Loop Road sinters, the second in the Orakei Korako, Opaheke and Ngatamariki sinters, and the third in the sinters from Rotokawa. Biomarker concentrations appear to have minimal diagnostic value, and we suggest that this is due to processes unrelated to the microbial community, i.e. rates of sinter formation. However, several aspects of the biomarker distributions appear to reflect homeoviscous adaptations to extremes of pH and temperature, whilst others reflect community composition. Specifically, the archaeol to bacterial diether ratio, bacterial diether ACL, degree of cyclisation in the biphytanyl For variations with temperature, samples have been limited to those with pH in the range 5.5-7.2; for variations with pH, samples have been limited to those within the temperature range 68-82 °C chains of the GDGTs and the C 31 and C 32 hopanoic acid indices typically increase with temperature. Archaea typically dominate at high temperatures (Robertson et al. 2005), and studies reveal an increased proportion of cyclic GDGTs (Gliozzi et al. 1983) and increased amounts of the thermally stable 17α,21β(H) hopanoid stereoisomer at higher growth temperatures, consistent with these findings. The changes in diether ACL are a new observation, but are nonetheless consistent with previous lipid studies. Furthermore, the archaeol to bacterial diether ratio, degree of GDGT cyclisation and the C 31 and C 32 hopanoic acid indices are typically higher at lower pH. Again, this is consistent with previous findings which report the predominance of archaea (Robertson et al. 2005), and a greater proportion of cyclic GDGTs (Gliozzi et al. 1983) and the 17α,21β(H) hopanoid stereoisomer (Pancost et al. 2003 at low pH levels. In contrast, bacterial diether ACL generally increases at higher pH, likely reflecting a change in community structure. No trends in fatty acid ACL, and proportions of branched and unsaturated fatty acids with temperature and pH are evident, likely reflecting overprinting due to population influences.
The consistency of many of these results with previous biomarker analyses of pure cultures illustrates that adaptive behaviour in cultured organisms extends to, and can be identified in, complex geothermal communities. Additional proxies based on the post-mortem alteration of hopanoid stereochemistry also appear robust within and between geothermal sites. However, caution is required when interpreting lipid distributions in geothermal environments unless both pH and temperature are constrained. Furthermore, it is clear that the effects of both homeoviscous adaptations and changes in microbial population need to be considered. Nonetheless, this work represents an expanded understanding of the diversity of lipid biomarkers in geothermal environments and reveals the potential use of microbial lipid biomarkers in profiling environmental conditions and microbial community structure.