Multilevel Bayesian framework for modeling the production, propagation   and detection of ultra-high energy cosmic rays
  Ultra-high energy cosmic rays (UHECRs) are atomic nuclei with energies over ten million times energies accessible to human-made particle accelerators. Evidence suggests that they originate from relatively nearby extragalactic sources, but the nature of the sources is unknown. We develop a multilevel Bayesian framework for assessing association of UHECRs and candidate source populations, and Markov chain Monte Carlo algorithms for estimating model parameters and comparing models by computing, via Chib's method, marginal likelihoods and Bayes factors. We demonstrate the framework by analyzing measurements of 69 UHECRs observed by the Pierre Auger Observatory (PAO) from 2004-2009, using a volume-complete catalog of 17 local active galactic nuclei (AGN) out to 15 megaparsecs as candidate sources. An early portion of the data ("period 1," with 14 events) was used by PAO to set an energy cut maximizing the anisotropy in period 1; the 69 measurements include this "tuned" subset, and subsequent "untuned" events with energies above the same cutoff. Also, measurement errors are approximately summarized. These factors are problematic for independent analyses of PAO data. Within the context of "standard candle" source models (i.e., with a common isotropic emission rate), and considering only the 55 untuned events, there is no significant evidence favoring association of UHECRs with local AGN vs. an isotropic background. The highest-probability associations are with the two nearest, adjacent AGN, Centaurus A and NGC 4945. If the association model is adopted, the fraction of UHECRs that may be associated is likely nonzero but is well below 50%. Our framework enables estimation of the angular scale for deflection of cosmic rays by cosmic magnetic fields; relatively modest scales of $\approx\!3^{\circ}$ to $30^{\circ}$ are favored. Models that assign a large fraction of UHECRs to a single nearby source (e.g., Centaurus A) are ruled out unless very large deflection scales are specified a priori, and even then they are disfavored. However, including the period 1 data alters the conclusions significantly, and a simulation study supports the idea that the period 1 data are anomalous, presumably due to the tuning. Accurate and optimal analysis of future data will likely require more complete disclosure of the data. 
Kunlaya Soiaporn, David Chernoff, Thomas Loredo, David Ruppert, Ira   Wasserman
astro-ph.HE astro-ph.IM stat.AP