ModuLand plug-in for Cytoscape: determination of hierarchical layers of   overlapping network modules and community centrality
  Summary: The ModuLand plug-in provides Cytoscape users an algorithm for determining extensively overlapping network modules. Moreover, it identifies several hierarchical layers of modules, where meta-nodes of the higher hierarchical layer represent modules of the lower layer. The tool assigns module cores, which predict the function of the whole module, and determines key nodes bridging two or multiple modules. The plug-in has a detailed JAVA-based graphical interface with various colouring options. The ModuLand tool can run on Windows, Linux, or Mac OS. We demonstrate its use on protein structure and metabolic networks. Availability: The plug-in and its user guide can be downloaded freely from: http://www.linkgroup.hu/modules.php. Contact: csermely.peter@med.semmelweis-univ.hu Supplementary information: Supplementary information is available at Bioinformatics online. 
Mate Szalay-Beko, Robin Palotai, Balazs Szappanos, Istvan A. Kovacs,   Balazs Papp and Peter Csermely
physics.comp-ph cond-mat.dis-nn cs.SI q-bio.MN