First-principles study of tunnel current between scanning tunneling   microscopy tip and hydrogen-adsorbed Si(001) surface
  A scanning tunneling microscopy (STM) image of a hydrogen-adsorbed Si(001) surface is studied using first-principles electron-conduction calculation. The resultant STM image and scanning tunneling spectroscopy spectra are in agreement with experimental results. The contributions of the $\pi$ states of bare dimers to the tunnel current are markedly large, and the $\sigma$ states of the dimers rarely affect the STM images. The tunnel currents do not pass through the centers of the dimers but go through the edges of the dimers with local loop currents. In addition, when the tip exists above the hydrogen-adsorbed dimer, there are certain contributions from the $\pi$ state of the adjacing bare dimers to the tunnel current. This leads to the STM image in which the hydrogen-adsorbed dimers neighboring bare dimers look higher than those surrounded by hydrogen-adsorbed dimers. These results are consistent with the experimental images observed by STM. 
Tomoya Ono, Shinya Horie, Katsuyoshi Endo, and Kikuji Hirose