Diseases with rooted staggered quarks
  Calculations using staggered quarks augmented with a root of the fermion determinant to reduce doubling give a qualitatively incorrect behavior in the small quark mass region. Attempts to circumvent this problem for the continuum limit involve an unproven combination of unphysical states, a loss of unitarity, and a rather peculiar non-commutation of limits. 
Michael Creutz