A Generator of Protein Folding Kinetics States for the   Diffusion-Collision Model
  Two separate algorithms for calculating the intermediate states, using cellular automata and the initial conditions in the rate matrix for the diffusion-collision model are introduced. They enable easy and fast calculations of the folding probabilities of the intermediate states, even for a very large number of microdomains. 
Zlatko K. Vasilkoski and David L. Weaver