Information profiles for DNA pattern discovery
  Finite-context modeling is a powerful tool for compressing and hence for representing DNA sequences. We describe an algorithm to detect genomic regularities, within a blind discovery strategy. The algorithm uses information profiles built using suitable combinations of finite-context models. We used the genome of the fission yeast Schizosaccharomyces pombe strain 972 h- for illustration, unveilling locations of low information content, which are usually associated with DNA regions of potential biological interest. 
Armando J. Pinho, Diogo Pratas, and Paulo J. S. G. Ferreira
q-bio.GN cs.IT math.IT