Extracting Biological Pathway Models From NLP Event Representations
  This paper describes an an open-source software system for the automatic conversion of NLP event representations to system biology structured data interchange formats such as SBML and BioPAX. It is part of a larger effort to make results of the NLP community available for system biology pathway modelers. 
Michael Spranger and Sucheendra K. Palaniappan and Samik Ghosh
cs.CL q-bio.MN