A comparison of methods for the analysis of binomial proportion data in   behavioral research
  In behavioral and psychiatric research, data consisting of a per-subject proportion of "successes" and "failures" over a finite number of trials often arise. This kind of clustered binary data are usually non-normally distributed, which can cause issues with parameter estimation and predictions if the usual general linear model is applied and sample size is small. Here we studied the performances of some of the available analytic methods applicable to the analysis of proportion data; namely linear regression, Poisson regression, beta-binomial regression and Generalized Linear Mixed Models (GLMMs). We report the conclusions from a simulation study evaluating power and Type I error rates of these models in scenarios akin to those met by behavioral researchers and differing in sample size, cluster size and fixed effects parameters; plus, we describe results from the application of these methods on data from two real behavioral experiments. Our results show that, while GLMMs and beta-binomial regression are powerful instruments for the analysis of clustered binary outcomes, linear approximation can still provide reliable hypothesis testing in this context. Poisson regression, on the other hand, can suffer heavily from model misspecification when used to model proportion data. We conclude providing some guidelines for the choice of appropriate analytical instruments, sample and cluster size depending on the conditions of the experiment. 
Alberto Ferrari and Mario Comelli
q-bio.QM q-bio.NC stat.ME