Node Aware Sparse Matrix-Vector Multiplication
  The sparse matrix-vector multiply (SpMV) operation is a key computational kernel in many simulations and linear solvers. The large communication requirements associated with a reference implementation of a parallel SpMV result in poor parallel scalability. The cost of communication depends on the physical locations of the send and receive processes: messages injected into the network are more costly than messages sent between processes on the same node. In this paper, a node aware parallel SpMV (NAPSpMV) is introduced to exploit knowledge of the system topology, specifically the node-processor layout, to reduce costs associated with communication. The values of the input vector are redistributed to minimize both the number and the size of messages that are injected into the network during a SpMV, leading to a reduction in communication costs. A variety of computational experiments that highlight the efficiency of this approach are presented. 
Amanda Bienz, William D. Gropp, Luke N. Olson
cs.DC cs.MS