On stabilizing the variance of dynamic functional brain connectivity   time series
  Assessment of dynamic functional brain connectivity (dFC) based on fMRI data is an increasingly popular strategy to investigate temporal dynamics of the brain's large-scale network architecture. Current practice when deriving connectivity estimates over time is to use the Fisher transform which aims to stabilize the variance of correlation values that fluctuate around varying true correlation values. It is however unclear how well the stabilization of signal variance performed by the Fisher transform works for each connectivity time series, when the true correlation is assumed to be fluctuating. This is of importance because many subsequent analyses either assume or perform better when the time series have stable variance or adheres to an approximate Gaussian distribution. In this paper, using simulations and analysis of resting-state fMRI data, we analyze the effect of applying different variance stabilization strategies on connectivity time-series. We here focus our investigation on the Fisher transform, the Box Cox transform and an approach that combines both transforms. Our results show that, if the intention of stabilizing the variance is to use metrics on the time series where stable variance or a Gaussian distribution is desired (e.g. clustering), the Fisher transform is not optimal and may even skew connectivity time series away from being Gaussian. Further, we show that the suboptimal performance of the Fisher transform can be substantially improved by including an additional Box-Cox transformation after the dFC time series has been Fisher transformed. 
William Hedley Thompson and Peter Fransson
q-bio.NC