All aircraft wearing the old livery were repainted or retired. It was also repainted in LNER livery. In addition, the unit has been specially repainted in old BR blue livery. By 2001, all except one locomotive had been repainted in this livery. All have since been repainted into ScotRail's standard Saltire livery. All aircraft in such livery were repainted or retired. It was repainted into the standard livery in 2014. During this refit, the ship's underwater hull was repainted and inspected. The PANYNJ also repainted H&M stations into the new PATH livery. The aircraft was repainted to the standard livery in December 2003. "Tornado" would be repainted into British Railways express passenger blue livery. The six remaining FP45 units were thereafter similarly repainted and renumbered. Later "Our Lady" was repainted in oil paint. It was repainted to the standard livery in March 2014. All were repainted and had their marker lights removed.