kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def round(self, ndigits=0): """ Rounds the amount using the current ``Decimal`` rounding algorithm. """ if ndigits is None: ndigits = 0 return self.__class__( amount=self.amount.quantize(Decimal('1e' + str(-ndigits))), currency=self.currency)	[ "def", "round", "(", "self", ",", "ndigits", "=", "0", ")", ":", "if", "ndigits", "is", "None", ":", "ndigits", "=", "0", "return", "self", ".", "__class__", "(", "amount", "=", "self", ".", "amount", ".", "quantize", "(", "Decimal", "(", "'1e'", "...	34.444444	13.777778
def _make_input(self, action, old_quat): """ Helper function that returns a dictionary with keys dpos, rotation from a raw input array. The first three elements are taken to be displacement in position, and a quaternion indicating the change in rotation with respect to @old_quat. ...	[ "def", "_make_input", "(", "self", ",", "action", ",", "old_quat", ")", ":", "return", "{", "\"dpos\"", ":", "action", "[", ":", "3", "]", ",", "# IK controller takes an absolute orientation in robot base frame", "\"rotation\"", ":", "T", ".", "quat2mat", "(", "...	47.909091	24.818182
def bump(args: argparse.Namespace) -> None: """ :args: An argparse.Namespace object. This function is bound to the 'bump' sub-command. It increments the version integer of the user's choice ('major', 'minor', or 'patch'). """ try: last_tag = last_git_release_tag(git_tags()) except N...	[ "def", "bump", "(", "args", ":", "argparse", ".", "Namespace", ")", "->", "None", ":", "try", ":", "last_tag", "=", "last_git_release_tag", "(", "git_tags", "(", ")", ")", "except", "NoGitTagsException", ":", "print", "(", "SemVer", "(", "0", ",", "1", ...	29.142857	15.238095
def stitch_block_rows(block_list): ''' Stitches blocks together into a single block rowwise. These blocks are 2D tables usually generated from tableproc. The final block will be of dimensions (sum(num_rows), max(num_cols)). ''' stitched = list(itertools.chain(*block_list)) max_length = max...	[ "def", "stitch_block_rows", "(", "block_list", ")", ":", "stitched", "=", "list", "(", "itertools", ".", "chain", "(", "*", "block_list", ")", ")", "max_length", "=", "max", "(", "len", "(", "row", ")", "for", "row", "in", "stitched", ")", "for", "row"...	43.181818	23.363636
def load_stock_links(self): """ Read stock links into the model """ links = self.__get_session().query(dal.AssetClassStock).all() for entity in links: # log(DEBUG, f"adding {entity.symbol} to {entity.assetclassid}") # mapping stock: Stock = Stock(entity.symbol...	[ "def", "load_stock_links", "(", "self", ")", ":", "links", "=", "self", ".", "__get_session", "(", ")", ".", "query", "(", "dal", ".", "AssetClassStock", ")", ".", "all", "(", ")", "for", "entity", "in", "links", ":", "# log(DEBUG, f\"adding {entity.symbol} ...	46.428571	15.5
def freeze(wait, force_kill): '''Freeze manager.''' if wait and force_kill: print('You cannot use both --wait and --force-kill options ' 'at the same time.', file=sys.stderr) return with Session() as session: if wait: while True: resp = sess...	[ "def", "freeze", "(", "wait", ",", "force_kill", ")", ":", "if", "wait", "and", "force_kill", ":", "print", "(", "'You cannot use both --wait and --force-kill options '", "'at the same time.'", ",", "file", "=", "sys", ".", "stderr", ")", "return", "with", "Sessio...	32.892857	19.892857
def read_tx_body(ptr, tx): """ Returns {'ins': [...], 'outs': [...]} """ _obj = {"ins": [], "outs": [], 'locktime': None} # number of inputs ins = read_var_int(ptr, tx) # all inputs for i in range(ins): _obj["ins"].append({ "outpoint": { "hash": read...	[ "def", "read_tx_body", "(", "ptr", ",", "tx", ")", ":", "_obj", "=", "{", "\"ins\"", ":", "[", "]", ",", "\"outs\"", ":", "[", "]", ",", "'locktime'", ":", "None", "}", "# number of inputs", "ins", "=", "read_var_int", "(", "ptr", ",", "tx", ")", "...	23.903226	17.83871
def _try_b32_decode(v): """ Attempt to decode a b32-encoded username which is sometimes generated by internal Globus components. The expectation is that the string is a valid ID, username, or b32-encoded name. Therefore, we can do some simple checking on it. If it does not appear to be formatt...	[ "def", "_try_b32_decode", "(", "v", ")", ":", "# should start with \"u_\"", "if", "not", "v", ".", "startswith", "(", "\"u_\"", ")", ":", "return", "None", "# usernames have @ , we want to allow `u_foo@example.com`", "# b32 names never have @", "if", "\"@\"", "in", "v",...	28.40625	21.96875
def get_config_tuple_from_egrc(egrc_path): """ Create a Config named tuple from the values specified in the .egrc. Expands any paths as necessary. egrc_path must exist and point a file. If not present in the .egrc, properties of the Config are returned as None. """ with open(egrc_path, 'r'...	[ "def", "get_config_tuple_from_egrc", "(", "egrc_path", ")", ":", "with", "open", "(", "egrc_path", ",", "'r'", ")", "as", "egrc", ":", "try", ":", "config", "=", "ConfigParser", ".", "RawConfigParser", "(", ")", "except", "AttributeError", ":", "config", "="...	35.171875	20.921875
def tag_autocomplete_js(format_string=None): """format_string should be ``app_label model counts`` renders 'tagging_ext/tag_autocomplete_js.html""" if format_string: context_list = format_string.split(' ') context = { 'app_label':context_list[0],'model':context_list[1], 'cou...	[ "def", "tag_autocomplete_js", "(", "format_string", "=", "None", ")", ":", "if", "format_string", ":", "context_list", "=", "format_string", ".", "split", "(", "' '", ")", "context", "=", "{", "'app_label'", ":", "context_list", "[", "0", "]", ",", "'model'"...	37.583333	21.5
def compute_integrated_acquisition_withGradients(acquisition,x): ''' Used to compute the acquisition function with gradients when samples of the hyper-parameters have been generated (used in GP_MCMC model). :param acquisition: acquisition function with GpyOpt model type GP_MCMC. :param x: location wher...	[ "def", "compute_integrated_acquisition_withGradients", "(", "acquisition", ",", "x", ")", ":", "acqu_x", "=", "0", "d_acqu_x", "=", "0", "for", "i", "in", "range", "(", "acquisition", ".", "model", ".", "num_hmc_samples", ")", ":", "acquisition", ".", "model",...	38.380952	31.047619
def _render_item(self, depth, key, value = None, *settings): """ Format single list item. """ strptrn = self.INDENT depth lchar = self.lchar(settings[self.SETTING_LIST_STYLE]) s = self._es_text(settings, settings[self.SETTING_LIST_FORMATING]) lchar = self.fmt...	[ "def", "_render_item", "(", "self", ",", "depth", ",", "key", ",", "value", "=", "None", ",", "", "", "settings", ")", ":", "strptrn", "=", "self", ".", "INDENT", "*", "depth", "lchar", "=", "self", ".", "lchar", "(", "settings", "[", "self", "."...	36.235294	19.647059
def _expand_formula_(formula_string): """ Accounts for the many ways a user may write a formula string, and returns an expanded chemical formula string. Assumptions: -The Chemical Formula string it is supplied is well-written, and has no hanging parethneses -The number of repeats occurs after the el...	[ "def", "_expand_formula_", "(", "formula_string", ")", ":", "formula_string", "=", "re", ".", "sub", "(", "r'[^A-Za-z0-9\\(\\)\\[\\]\\·\\.]+',", " ", "',", " ", "ormula_string)", "", "hydrate_pos", "=", "formula_string", ".", "find", "(", "'·')", "", "if", "hydr...	44.94	15.78
def run_location(self, value): """The run_location property. Args: value (string). the property value. """ if value == self._defaults['runLocation'] and 'runLocation' in self._values: del self._values['runLocation'] else: self._values[...	[ "def", "run_location", "(", "self", ",", "value", ")", ":", "if", "value", "==", "self", ".", "_defaults", "[", "'runLocation'", "]", "and", "'runLocation'", "in", "self", ".", "_values", ":", "del", "self", ".", "_values", "[", "'runLocation'", "]", "el...	33.3	15.7
def compute_file_hashes(file_path, hashes=frozenset(['md5'])): """ Digests data read from file denoted by file_path. """ if not os.path.exists(file_path): logging.warning("%s does not exist" % file_path) return else: logging.debug("Computing [%s] hashes for file [%s]" % ('...	[ "def", "compute_file_hashes", "(", "file_path", ",", "hashes", "=", "frozenset", "(", "[", "'md5'", "]", ")", ")", ":", "if", "not", "os", ".", "path", ".", "exists", "(", "file_path", ")", ":", "logging", ".", "warning", "(", "\"%s does not exist\"", "%...	36.25	20.875
def refresh_products(self, **kwargs): """ Refresh a product's cached info. Basically calls product_get with the passed arguments, and tries to intelligently update our product cache. For example, if we already have cached info for product=foo, and you pass in names=["bar...	[ "def", "refresh_products", "(", "self", ",", "", "", "kwargs", ")", ":", "for", "product", "in", "self", ".", "product_get", "(", "", "", "kwargs", ")", ":", "updated", "=", "False", "for", "current", "in", "self", ".", "_cache", ".", "products", ...	40.217391	18.652174
def set_result(self, job_id, result): """Set the result for a job. This will overwrite any existing results for the job. Args: job_id: The ID of the WorkItem to set the result for. result: A WorkResult indicating the result of the job. Raises: KeyError: ...	[ "def", "set_result", "(", "self", ",", "job_id", ",", "result", ")", ":", "with", "self", ".", "_conn", ":", "try", ":", "self", ".", "_conn", ".", "execute", "(", "'''\n REPLACE INTO results\n VALUES (?, ?, ?, ?, ?)\n ...	35	18.318182
def ethnicities_clean(): """ Get dictionary of unformatted ethnicity types mapped to clean corresponding ethnicity strings """ eths_clean = {} fname = pkg_resources.resource_filename(__name__, 'resources/Ethnicity_Groups.csv') with open(fname, 'rU') as csvfile: reader = csv.reader(csvfile, delimiter = ',')...	[ "def", "ethnicities_clean", "(", ")", ":", "eths_clean", "=", "{", "}", "fname", "=", "pkg_resources", ".", "resource_filename", "(", "__name__", ",", "'resources/Ethnicity_Groups.csv'", ")", "with", "open", "(", "fname", ",", "'rU'", ")", "as", "csvfile", ":"...	32.411765	17.764706
def generate_table_from(data): "Output a nicely formatted ascii table" table = Texttable(max_width=120) table.add_row(["view", "method", "status", "count", "minimum", "maximum", "mean", "stdev", "queries", "querytime"]) table.set_cols_align(["l", "l", "l", "r", "r", "r", "r", "r", "r", "r"]) for i...	[ "def", "generate_table_from", "(", "data", ")", ":", "table", "=", "Texttable", "(", "max_width", "=", "120", ")", "table", ".", "add_row", "(", "[", "\"view\"", ",", "\"method\"", ",", "\"status\"", ",", "\"count\"", ",", "\"minimum\"", ",", "\"maximum\"", ...	46.565217	31.173913
def appliance_time_and_locale_configuration(self): """ Gets the ApplianceTimeAndLocaleConfiguration API client. Returns: ApplianceTimeAndLocaleConfiguration: """ if not self.__appliance_time_and_locale_configuration: self.__appliance_time_and_locale_confi...	[ "def", "appliance_time_and_locale_configuration", "(", "self", ")", ":", "if", "not", "self", ".", "__appliance_time_and_locale_configuration", ":", "self", ".", "__appliance_time_and_locale_configuration", "=", "ApplianceTimeAndLocaleConfiguration", "(", "self", ".", "__conn...	43.8	22.4
def tagReportCallback(llrpMsg): """Function to run each time the reader reports seeing tags.""" global tagReport tags = llrpMsg.msgdict['RO_ACCESS_REPORT']['TagReportData'] if len(tags): logger.info('saw tag(s): %s', pprint.pformat(tags)) else: logger.info('no tags seen') ret...	[ "def", "tagReportCallback", "(", "llrpMsg", ")", ":", "global", "tagReport", "tags", "=", "llrpMsg", ".", "msgdict", "[", "'RO_ACCESS_REPORT'", "]", "[", "'TagReportData'", "]", "if", "len", "(", "tags", ")", ":", "logger", ".", "info", "(", "'saw tag(s): %s...	40.15	16.8
def _get_deltas(self, rake): """ Return the value of deltas (delta_R, delta_S, delta_V, delta_I), as defined in "Table 5: Model 1" pag 198 """ # delta_R = 1 for reverse focal mechanism (45<rake<135) # and for interface events, 0 for all other events # delta_S = 1 ...	[ "def", "_get_deltas", "(", "self", ",", "rake", ")", ":", "# delta_R = 1 for reverse focal mechanism (45<rake<135)", "# and for interface events, 0 for all other events", "# delta_S = 1 for Strike-slip focal mechanisms (0<=rake<=45) or", "# (135<=rake<=180) or (-45<=rake<=0), 0 for all other e...	36.925926	18.62963
def minimize_matrix(self): """ This method finds and returns the permutations that produce the lowest ewald sum calls recursive function to iterate through permutations """ if self._algo == EwaldMinimizer.ALGO_FAST or \ self._algo == EwaldMinimizer.ALGO_BE...	[ "def", "minimize_matrix", "(", "self", ")", ":", "if", "self", ".", "_algo", "==", "EwaldMinimizer", ".", "ALGO_FAST", "or", "self", ".", "_algo", "==", "EwaldMinimizer", ".", "ALGO_BEST_FIRST", ":", "return", "self", ".", "_recurse", "(", "self", ".", "_m...	49.555556	19.111111
def save_as_plt(self, fname, pixel_array=None, vmin=None, vmax=None, cmap=None, format=None, origin=None): """ This method saves the image from a numpy array using matplotlib :param fname: Location and name of the image file to be saved. :param pixel_array: Numpy pixel array, i.e. ``num...	[ "def", "save_as_plt", "(", "self", ",", "fname", ",", "pixel_array", "=", "None", ",", "vmin", "=", "None", ",", "vmax", "=", "None", ",", "cmap", "=", "None", ",", "format", "=", "None", ",", "origin", "=", "None", ")", ":", "from", "matplotlib", ...	37.9	14.566667
def process_full_position(data, header, var_only=False): """ Return genetic data when all alleles called on same line. Returns an array containing one item, a tuple of five items: (string) chromosome (string) start position (1-based) (array of strings) matching dbSNP entries ...	[ "def", "process_full_position", "(", "data", ",", "header", ",", "var_only", "=", "False", ")", ":", "feature_type", "=", "data", "[", "header", "[", "'varType'", "]", "]", "# Skip unmatchable, uncovered, or pseudoautosomal-in-X", "if", "(", "feature_type", "==", ...	37.056604	12.264151
def diff_aff(self): """Symmetric diffusion affinity matrix Return or calculate the symmetric diffusion affinity matrix .. math:: A(x,y) = K(x,y) (d(x) d(y))^{-1/2} where :math:`d` is the degrees (row sums of the kernel.) Returns ------- diff_aff : array-like,...	[ "def", "diff_aff", "(", "self", ")", ":", "row_degrees", "=", "np", ".", "array", "(", "self", ".", "kernel", ".", "sum", "(", "axis", "=", "1", ")", ")", ".", "reshape", "(", "-", "1", ",", "1", ")", "col_degrees", "=", "np", ".", "array", "("...	36.956522	23.869565
def seed_url(self): """A URL that can be used to open the page. The URL is formatted from :py:attr:`URL_TEMPLATE`, which is then appended to :py:attr:`base_url` unless the template results in an absolute URL. :return: URL that can be used to open the page. :rtype: str ...	[ "def", "seed_url", "(", "self", ")", ":", "url", "=", "self", ".", "base_url", "if", "self", ".", "URL_TEMPLATE", "is", "not", "None", ":", "url", "=", "urlparse", ".", "urljoin", "(", "self", ".", "base_url", ",", "self", ".", "URL_TEMPLATE", ".", "...	30.21875	19.46875
def main(*argv): """ main driver of program """ try: adminUsername = argv[0] adminPassword = argv[1] siteURL = argv[2] username = argv[3] groupName = argv[4] # Logic # # Connect to AGOL # sh = arcrest.AGOLTokenSecurityHandler(ad...	[ "def", "main", "(", "*", "argv", ")", ":", "try", ":", "adminUsername", "=", "argv", "[", "0", "]", "adminPassword", "=", "argv", "[", "1", "]", "siteURL", "=", "argv", "[", "2", "]", "username", "=", "argv", "[", "3", "]", "groupName", "=", "arg...	40.272727	18.181818
def rows(self): """ Return/yield tuples or lists corresponding to each row to be inserted. """ with self.input().open('r') as fobj: for line in fobj: yield line.strip('\n').split('\t')	[ "def", "rows", "(", "self", ")", ":", "with", "self", ".", "input", "(", ")", ".", "open", "(", "'r'", ")", "as", "fobj", ":", "for", "line", "in", "fobj", ":", "yield", "line", ".", "strip", "(", "'\\n'", ")", ".", "split", "(", "'\\t'", ")" ]	34	12.571429
def move_up(self): """Move up one level in the hierarchy, unless already on top.""" if self.current_item.parent is not None: self.current_item = self.current_item.parent for f in self._hooks["up"]: f(self) if self.current_item is self.root: for f in s...	[ "def", "move_up", "(", "self", ")", ":", "if", "self", ".", "current_item", ".", "parent", "is", "not", "None", ":", "self", ".", "current_item", "=", "self", ".", "current_item", ".", "parent", "for", "f", "in", "self", ".", "_hooks", "[", "\"up\"", ...	33.818182	13.818182
def get_time_index_range(self, date_search_start=None, date_search_end=None, time_index_start=None, time_index_end=None, time_index=None): """ Generates a time...	[ "def", "get_time_index_range", "(", "self", ",", "date_search_start", "=", "None", ",", "date_search_end", "=", "None", ",", "time_index_start", "=", "None", ",", "time_index_end", "=", "None", ",", "time_index", "=", "None", ")", ":", "# get the range of time bas...	40.94958	20.563025
def deploy_app(self, site_folder, runtime_type=''): ''' a method to deploy a static html page to heroku using php ''' title = '%s.deploy_php' % self.__class__.__name__ # validate inputs input_fields = { 'site_folder': site_folder, 'runtime_type': runtime_t...	[ "def", "deploy_app", "(", "self", ",", "site_folder", ",", "runtime_type", "=", "''", ")", ":", "title", "=", "'%s.deploy_php'", "%", "self", ".", "__class__", ".", "__name__", "# validate inputs\r", "input_fields", "=", "{", "'site_folder'", ":", "site_folder",...	41.958333	20.275
def resample(self, indexer: Optional[Mapping[Hashable, str]] = None, skipna=None, closed: Optional[str] = None, label: Optional[str] = None, base: int = 0, keep_attrs: Optional[bool] = None, loffset=None, **indexer_kwargs: str): ...	[ "def", "resample", "(", "self", ",", "indexer", ":", "Optional", "[", "Mapping", "[", "Hashable", ",", "str", "]", "]", "=", "None", ",", "skipna", "=", "None", ",", "closed", ":", "Optional", "[", "str", "]", "=", "None", ",", "label", ":", "Optio...	43.129032	22.072581
def stop_button_click_handler(self): """Method to handle what to do when the stop button is pressed""" self.stop_button.setDisabled(True) # Interrupt computations or stop debugging if not self.shellwidget._reading: self.interrupt_kernel() else: self...	[ "def", "stop_button_click_handler", "(", "self", ")", ":", "self", ".", "stop_button", ".", "setDisabled", "(", "True", ")", "# Interrupt computations or stop debugging\r", "if", "not", "self", ".", "shellwidget", ".", "_reading", ":", "self", ".", "interrupt_kernel...	43.5	7.5
def follow(self, login): """Make the authenticated user follow login. :param str login: (required), user to follow :returns: bool """ resp = False if login: url = self._build_url('user', 'following', login) resp = self._boolean(self._put(url), 204...	[ "def", "follow", "(", "self", ",", "login", ")", ":", "resp", "=", "False", "if", "login", ":", "url", "=", "self", ".", "_build_url", "(", "'user'", ",", "'following'", ",", "login", ")", "resp", "=", "self", ".", "_boolean", "(", "self", ".", "_p...	30.545455	17.181818
def create_metric_definition(self, metric_type, metric_id, tags): """ Create metric definition with custom definition. tags should be a set of tags, such as units, env .. :param metric_type: MetricType of the new definition :param metric_id: metric_id is the string index of ...	[ "def", "create_metric_definition", "(", "self", ",", "metric_type", ",", "metric_id", ",", "", "", "tags", ")", ":", "item", "=", "{", "'id'", ":", "metric_id", "}", "if", "len", "(", "tags", ")", ">", "0", ":", "# We have some arguments to pass..", "dat...	34.821429	19.392857
def set(self, key: Any, value: Any) -> None: """ Sets the value of a key to a supplied value """ if key is not None: self[key] = value	[ "def", "set", "(", "self", ",", "key", ":", "Any", ",", "value", ":", "Any", ")", "->", "None", ":", "if", "key", "is", "not", "None", ":", "self", "[", "key", "]", "=", "value" ]	39.75	7
async def send_heartbeat(self, name): """Send a heartbeat for a service. Args: name (string): The name of the service to send a heartbeat for """ await self.send_command(OPERATIONS.CMD_HEARTBEAT, {'name': name}, MESSAGES.HeartbeatResponse, ti...	[ "async", "def", "send_heartbeat", "(", "self", ",", "name", ")", ":", "await", "self", ".", "send_command", "(", "OPERATIONS", ".", "CMD_HEARTBEAT", ",", "{", "'name'", ":", "name", "}", ",", "MESSAGES", ".", "HeartbeatResponse", ",", "timeout", "=", "5.0"...	35.777778	23.222222
def _brahmic(data, scheme_map, **kw): """Transliterate `data` with the given `scheme_map`. This function is used when the source scheme is a Brahmic scheme. :param data: the data to transliterate :param scheme_map: a dict that maps between characters in the old scheme and characters in the...	[ "def", "_brahmic", "(", "data", ",", "scheme_map", ",", "", "", "kw", ")", ":", "if", "scheme_map", ".", "from_scheme", ".", "name", "==", "northern", ".", "GURMUKHI", ":", "data", "=", "northern", ".", "GurmukhiScheme", ".", "replace_tippi", "(", "tex...	34.064103	20.871795
def p_CommentOrEmptyLineList(p): ''' CommentOrEmptyLineList : \| CommentOrEmptyLine \| CommentOrEmptyLineList CommentOrEmptyLine ''' if len(p) <= 1: p[0] = CommentOrEmptyLineList(None, None) elif len(p) <= 2: p[0] = CommentOrEmptyL...	[ "def", "p_CommentOrEmptyLineList", "(", "p", ")", ":", "if", "len", "(", "p", ")", "<=", "1", ":", "p", "[", "0", "]", "=", "CommentOrEmptyLineList", "(", "None", ",", "None", ")", "elif", "len", "(", "p", ")", "<=", "2", ":", "p", "[", "0", "]...	32.333333	18.5
def _compute_projection(self, X, W): """Compute the LPP projection matrix Parameters ---------- X : array_like, (n_samples, n_features) The input data W : array_like or sparse matrix, (n_samples, n_samples) The precomputed adjacency matrix Return...	[ "def", "_compute_projection", "(", "self", ",", "X", ",", "W", ")", ":", "# TODO: check W input; handle sparse case", "X", "=", "check_array", "(", "X", ")", "D", "=", "np", ".", "diag", "(", "W", ".", "sum", "(", "1", ")", ")", "L", "=", "D", "-", ...	32.833333	18.875
def start_event_loop_qt4(app=None): """Start the qt4 event loop in a consistent manner.""" if app is None: app = get_app_qt4(['']) if not is_event_loop_running_qt4(app): app._in_event_loop = True app.exec_() app._in_event_loop = False else: app._in_event_loop = Tr...	[ "def", "start_event_loop_qt4", "(", "app", "=", "None", ")", ":", "if", "app", "is", "None", ":", "app", "=", "get_app_qt4", "(", "[", "''", "]", ")", "if", "not", "is_event_loop_running_qt4", "(", "app", ")", ":", "app", ".", "_in_event_loop", "=", "T...	31.3	10.9
def focusOutEvent( self, event ): """ Overloads the focus out event to cancel editing when the widget loses focus. :param event \| <QFocusEvent> """ super(XNavigationEdit, self).focusOutEvent(event) self.cancelEdit()	[ "def", "focusOutEvent", "(", "self", ",", "event", ")", ":", "super", "(", "XNavigationEdit", ",", "self", ")", ".", "focusOutEvent", "(", "event", ")", "self", ".", "cancelEdit", "(", ")" ]	28.5	16.7
def updateCurrentValue(self, value): """ Disables snapping during the current value update to ensure a smooth transition for node animations. Since this can only be called via code, we don't need to worry about snapping to the grid for a user. """ xsnap = None ys...	[ "def", "updateCurrentValue", "(", "self", ",", "value", ")", ":", "xsnap", "=", "None", "ysnap", "=", "None", "if", "value", "!=", "self", ".", "endValue", "(", ")", ":", "xsnap", "=", "self", ".", "targetObject", "(", ")", ".", "isXSnappedToGrid", "("...	39.047619	18.571429
def get_votes_comment(self, args, kwargs): """ :allowed_param: 'commentId' """ return bind_api( api=self, path='/comments/{commentId}/votes', payload_type='vote', payload_list=True, allowed_param=['commentId'] )(args, **kwar...	[ "def", "get_votes_comment", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "return", "bind_api", "(", "api", "=", "self", ",", "path", "=", "'/comments/{commentId}/votes'", ",", "payload_type", "=", "'vote'", ",", "payload_list", "=", "T...	31.4	8
def pec(self, value): """True if Packet Error Codes (PEC) are enabled""" pec = bool(value) if pec != self._pec: if ioctl(self._fd, SMBUS.I2C_PEC, pec): raise IOError(ffi.errno) self._pec = pec	[ "def", "pec", "(", "self", ",", "value", ")", ":", "pec", "=", "bool", "(", "value", ")", "if", "pec", "!=", "self", ".", "_pec", ":", "if", "ioctl", "(", "self", ".", "_fd", ",", "SMBUS", ".", "I2C_PEC", ",", "pec", ")", ":", "raise", "IOError...	35.714286	10
def other_set_producer(socket, which_set, image_archive, patch_archive, groundtruth): """Push image files read from the valid/test set TAR to a socket. Parameters ---------- socket : :class:`zmq.Socket` PUSH socket on which to send images. which_set : str Whic...	[ "def", "other_set_producer", "(", "socket", ",", "which_set", ",", "image_archive", ",", "patch_archive", ",", "groundtruth", ")", ":", "patch_images", "=", "extract_patch_images", "(", "patch_archive", ",", "which_set", ")", "num_patched", "=", "0", "with", "tar_...	44.111111	19.333333
def fill_key_info(self, key_info, signature_method): """ Fills the KeyInfo node :param key_info: KeyInfo node :type key_info: lxml.etree.Element :param signature_method: Signature node to use :type signature_method: str :return: None """ x509_data...	[ "def", "fill_key_info", "(", "self", ",", "key_info", ",", "signature_method", ")", ":", "x509_data", "=", "key_info", ".", "find", "(", "'ds:X509Data'", ",", "namespaces", "=", "constants", ".", "NS_MAP", ")", "if", "x509_data", "is", "not", "None", ":", ...	42.62069	14
def kill(self, unique_id, configs=None): """ Issues a kill -9 to the specified process calls the deployers get_pid function for the process. If no pid_file/pid_keyword is specified a generic grep of ps aux command is executed on remote machine based on process parameters which may not be reliable if mor...	[ "def", "kill", "(", "self", ",", "unique_id", ",", "configs", "=", "None", ")", ":", "self", ".", "_send_signal", "(", "unique_id", ",", "signal", ".", "SIGKILL", ",", "configs", ")" ]	52	23.555556
def fit(self, values, bins): """ Fit the transform using the given values (in our case ic50s). Parameters ---------- values : ic50 values bins : bins for the cumulative distribution function Anything that can be passed to numpy.histogram's "bins" argument ...	[ "def", "fit", "(", "self", ",", "values", ",", "bins", ")", ":", "assert", "self", ".", "cdf", "is", "None", "assert", "self", ".", "bin_edges", "is", "None", "assert", "len", "(", "values", ")", ">", "0", "(", "hist", ",", "self", ".", "bin_edges"...	36.428571	16.619048
def to_glyphs_background_image(self, ufo_glyph, layer): """Copy the background image from the UFO Glyph to the GSLayer.""" ufo_image = ufo_glyph.image if ufo_image.fileName is None: return image = self.glyphs_module.GSBackgroundImage() image.path = ufo_image.fileName image.transform = Tr...	[ "def", "to_glyphs_background_image", "(", "self", ",", "ufo_glyph", ",", "layer", ")", ":", "ufo_image", "=", "ufo_glyph", ".", "image", "if", "ufo_image", ".", "fileName", "is", "None", ":", "return", "image", "=", "self", ".", "glyphs_module", ".", "GSBack...	41.875	8.875
def items(self, folder_id, subfolder_id, ann_id=None): '''Yields an unodered generator of items in a subfolder. The generator yields items, which are represented by a tuple of ``content_id`` and ``subtopic_id``. The format of these identifiers is unspecified. By default (with `...	[ "def", "items", "(", "self", ",", "folder_id", ",", "subfolder_id", ",", "ann_id", "=", "None", ")", ":", "self", ".", "assert_valid_folder_id", "(", "folder_id", ")", "self", ".", "assert_valid_folder_id", "(", "subfolder_id", ")", "ann_id", "=", "self", "....	43.413793	18.172414
def from_json(json): """Creates a Track from a JSON file. No preprocessing is done. Arguments: json: map with the keys: name (optional) and segments. Return: A track instance """ segments = [Segment.from_json(s) for s in json['segments']] ...	[ "def", "from_json", "(", "json", ")", ":", "segments", "=", "[", "Segment", ".", "from_json", "(", "s", ")", "for", "s", "in", "json", "[", "'segments'", "]", "]", "return", "Track", "(", "json", "[", "'name'", "]", ",", "segments", ")", ".", "comp...	30.333333	20.083333
def phrase_replace(self, replace_dict): """ Replace phrases with single token, mapping defined in replace_dict """ def r(tokens): text = ' ' + ' '.join(tokens) for k, v in replace_dict.items(): text = text.replace(...	[ "def", "phrase_replace", "(", "self", ",", "replace_dict", ")", ":", "def", "r", "(", "tokens", ")", ":", "text", "=", "' '", "+", "' '", ".", "join", "(", "tokens", ")", "for", "k", ",", "v", "in", "replace_dict", ".", "items", "(", ")", ":", "t...	35	17.166667
def unexpanduser(path): r""" Replaces home directory with '~' """ homedir = expanduser('~') if path.startswith(homedir): path = '~' + path[len(homedir):] return path	[ "def", "unexpanduser", "(", "path", ")", ":", "homedir", "=", "expanduser", "(", "'~'", ")", "if", "path", ".", "startswith", "(", "homedir", ")", ":", "path", "=", "'~'", "+", "path", "[", "len", "(", "homedir", ")", ":", "]", "return", "path" ]	23.75	8.125
def load_segment(self, f, is_irom_segment=False): """ Load the next segment from the image file """ file_offs = f.tell() (offset, size) = struct.unpack('<II', f.read(8)) self.warn_if_unusual_segment(offset, size, is_irom_segment) segment_data = f.read(size) if len(segment...	[ "def", "load_segment", "(", "self", ",", "f", ",", "is_irom_segment", "=", "False", ")", ":", "file_offs", "=", "f", ".", "tell", "(", ")", "(", "offset", ",", "size", ")", "=", "struct", ".", "unpack", "(", "'<II'", ",", "f", ".", "read", "(", "...	52.727273	18.818182
def load_values(self): """ Go through the env var map, transferring the values to this object as attributes. :raises: RuntimeError if a required env var isn't defined. """ for config_name, evar in self.evar_defs.items(): if evar.is_required and evar.name not...	[ "def", "load_values", "(", "self", ")", ":", "for", "config_name", ",", "evar", "in", "self", ".", "evar_defs", ".", "items", "(", ")", ":", "if", "evar", ".", "is_required", "and", "evar", ".", "name", "not", "in", "os", ".", "environ", ":", "raise"...	43.703704	18.222222
def _dispense_during_transfer(self, vol, loc, **kwargs): """ Performs a :any:`dispense` when running a :any:`transfer`, and optionally a :any:`mix`, :any:`touch_tip`, and/or :any:`blow_out` afterwards. """ mix_after = kwargs.get('mix_after', (0, 0)) rate = kwargs....	[ "def", "_dispense_during_transfer", "(", "self", ",", "vol", ",", "loc", ",", "", "", "kwargs", ")", ":", "mix_after", "=", "kwargs", ".", "get", "(", "'mix_after'", ",", "(", "0", ",", "0", ")", ")", "rate", "=", "kwargs", ".", "get", "(", "'rat...	36.625	14.25
def cred_def_id(self, issuer_did: str, schema_seq_no: int) -> str: """ Return credential definition identifier for input issuer DID and schema sequence number. :param issuer_did: DID of credential definition issuer :param schema_seq_no: schema sequence number :return: credential...	[ "def", "cred_def_id", "(", "self", ",", "issuer_did", ":", "str", ",", "schema_seq_no", ":", "int", ")", "->", "str", ":", "return", "'{}:3:CL:{}{}'", ".", "format", "(", "# 3 marks indy cred def id, CL is sig type", "issuer_did", ",", "schema_seq_no", ",", "self"...	39.230769	21.846154
def apply_attribute(node: Node, attr: XmlAttr): """Maps xml attribute to instance node property and setups bindings""" setter = get_setter(attr) stripped_value = attr.value.strip() if attr.value else '' if is_expression(stripped_value): (binding_type, expr_body) = parse_expression(stripped_value...	[ "def", "apply_attribute", "(", "node", ":", "Node", ",", "attr", ":", "XmlAttr", ")", ":", "setter", "=", "get_setter", "(", "attr", ")", "stripped_value", "=", "attr", ".", "value", ".", "strip", "(", ")", "if", "attr", ".", "value", "else", "''", "...	51.555556	17.777778
def check_auth(user): ''' Check if the user should or shouldn't be inside the system: - If the user is staff or superuser: LOGIN GRANTED - If the user has a Person and it is not "disabled": LOGIN GRANTED - Elsewhere: LOGIN DENIED ''' # Initialize authentication auth = None person = ...	[ "def", "check_auth", "(", "user", ")", ":", "# Initialize authentication", "auth", "=", "None", "person", "=", "None", "# Check if there is an user", "if", "user", ":", "# It means that Django accepted the user and it is active", "if", "user", ".", "is_staff", "or", "us...	34.472222	22.138889
def _create_array(self, arr: np.ndarray) -> int: """Returns the handle of a RawArray created from the given numpy array. Args: arr: A numpy ndarray. Returns: The handle (int) of the array. Raises: ValueError: if arr is not a ndarray or of an unsupported d...	[ "def", "_create_array", "(", "self", ",", "arr", ":", "np", ".", "ndarray", ")", "->", "int", ":", "if", "not", "isinstance", "(", "arr", ",", "np", ".", "ndarray", ")", ":", "raise", "ValueError", "(", "'Array is not a numpy ndarray.'", ")", "try", ":",...	34.358974	21.333333
def collapse_focussed(self): """ Collapse currently focussed position; works only if the underlying tree allows it. """ if implementsCollapseAPI(self._tree): w, focuspos = self.get_focus() self._tree.collapse(focuspos) self._walker.clear_cache(...	[ "def", "collapse_focussed", "(", "self", ")", ":", "if", "implementsCollapseAPI", "(", "self", ".", "_tree", ")", ":", "w", ",", "focuspos", "=", "self", ".", "get_focus", "(", ")", "self", ".", "_tree", ".", "collapse", "(", "focuspos", ")", "self", "...	33.9	8.7
def _send_bootstrap_request(self, request): """Make a request using an ephemeral broker connection This routine is used to make broker-unaware requests to get the initial cluster metadata. It cycles through the configured hosts, trying to connect and send the request to each in turn. Th...	[ "def", "_send_bootstrap_request", "(", "self", ",", "request", ")", ":", "hostports", "=", "list", "(", "self", ".", "_bootstrap_hosts", ")", "random", ".", "shuffle", "(", "hostports", ")", "for", "host", ",", "port", "in", "hostports", ":", "ep", "=", ...	43.479167	26.25
def filter(self, dict_name, priority_min='-inf', priority_max='+inf', start=0, limit=None): '''Get a subset of a dictionary. This retrieves only keys with priority scores greater than or equal to `priority_min` and less than or equal to `priority_max`. Of those keys, it s...	[ "def", "filter", "(", "self", ",", "dict_name", ",", "priority_min", "=", "'-inf'", ",", "priority_max", "=", "'+inf'", ",", "start", "=", "0", ",", "limit", "=", "None", ")", ":", "conn", "=", "redis", ".", "Redis", "(", "connection_pool", "=", "self"...	41.5	21.558824
def clip(dataset, normal='x', origin=None, invert=True): """ Clip a dataset by a plane by specifying the origin and normal. If no parameters are given the clip will occur in the center of that dataset Parameters ---------- normal : tuple(float) or str Length ...	[ "def", "clip", "(", "dataset", ",", "normal", "=", "'x'", ",", "origin", "=", "None", ",", "invert", "=", "True", ")", ":", "if", "isinstance", "(", "normal", ",", "str", ")", ":", "normal", "=", "NORMALS", "[", "normal", ".", "lower", "(", ")", ...	39.029412	19.558824
def has_space(self, length=1, offset=0): """Returns boolean if self.pos + length < working string length.""" return self.pos + (length + offset) - 1 < self.length	[ "def", "has_space", "(", "self", ",", "length", "=", "1", ",", "offset", "=", "0", ")", ":", "return", "self", ".", "pos", "+", "(", "length", "+", "offset", ")", "-", "1", "<", "self", ".", "length" ]	58.666667	7
def script_post_save(model, os_path, contents_manager, **kwargs): """convert notebooks to Python script after save with nbconvert replaces `ipython notebook --script` """ from nbconvert.exporters.script import ScriptExporter if model['type'] != 'notebook': return global _script_export...	[ "def", "script_post_save", "(", "model", ",", "os_path", ",", "contents_manager", ",", "", "", "kwargs", ")", ":", "from", "nbconvert", ".", "exporters", ".", "script", "import", "ScriptExporter", "if", "model", "[", "'type'", "]", "!=", "'notebook'", ":",...	32.36	22.2
def decorate(func, caller, extras=()): """ decorate(func, caller) decorates a function using a caller. """ evaldict = dict(_call_=caller, _func_=func) es = '' for i, extra in enumerate(extras): ex = '_e%d_' % i evaldict[ex] = extra es += ex + ', ' fun = FunctionMaker....	[ "def", "decorate", "(", "func", ",", "caller", ",", "extras", "=", "(", ")", ")", ":", "evaldict", "=", "dict", "(", "_call_", "=", "caller", ",", "_func_", "=", "func", ")", "es", "=", "''", "for", "i", ",", "extra", "in", "enumerate", "(", "ext...	32.0625	11.3125
def update_access_key(self, access_key_id, status, user_name=None): """ Changes the status of the specified access key from Active to Inactive or vice versa. This action can be used to disable a user's key as part of a key rotation workflow. If the user_name is not specified, t...	[ "def", "update_access_key", "(", "self", ",", "access_key_id", ",", "status", ",", "user_name", "=", "None", ")", ":", "params", "=", "{", "'AccessKeyId'", ":", "access_key_id", ",", "'Status'", ":", "status", "}", "if", "user_name", ":", "params", "[", "'...	37	20.166667
def _fix_call_activities_signavio(self, bpmn, filename): """ Signavio produces slightly invalid BPMN for call activity nodes... It is supposed to put a reference to the id of the called process in to the calledElement attribute. Instead it stores a string (which is the name of th...	[ "def", "_fix_call_activities_signavio", "(", "self", ",", "bpmn", ",", "filename", ")", ":", "for", "node", "in", "xpath_eval", "(", "bpmn", ")", "(", "\".//bpmn:callActivity\"", ")", ":", "calledElement", "=", "node", ".", "get", "(", "'calledElement'", ",", ...	51.4	20.3
def _calc_hash_da(self, rs): """Compute hash of D and A timestamps for single-step D+A case. """ self.hash_d = hash_(rs.get_state())[:6] self.hash_a = self.hash_d	[ "def", "_calc_hash_da", "(", "self", ",", "rs", ")", ":", "self", ".", "hash_d", "=", "hash_", "(", "rs", ".", "get_state", "(", ")", ")", "[", ":", "6", "]", "self", ".", "hash_a", "=", "self", ".", "hash_d" ]	38	5.2
def host_domains(self, ip=None, limit=None, kwargs): """Pass in an IP address.""" return self._results('reverse-ip', '/v1/{0}/host-domains'.format(ip), limit=limit, kwargs)	[ "def", "host_domains", "(", "self", ",", "ip", "=", "None", ",", "limit", "=", "None", ",", "", "", "kwargs", ")", ":", "return", "self", ".", "_results", "(", "'reverse-ip'", ",", "'/v1/{0}/host-domains'", ".", "format", "(", "ip", ")", ",", "limit"...	63.333333	24.666667
def print_cm(cm, labels, hide_zeroes=False, hide_diagonal=False, hide_threshold=None): """pretty print for confusion matrixes""" columnwidth = max([len(x) for x in labels] + [5]) # 5 is value length empty_cell = " " * columnwidth # Print header print(" " + empty_cell, end=" ") for label in l...	[ "def", "print_cm", "(", "cm", ",", "labels", ",", "hide_zeroes", "=", "False", ",", "hide_diagonal", "=", "False", ",", "hide_threshold", "=", "None", ")", ":", "columnwidth", "=", "max", "(", "[", "len", "(", "x", ")", "for", "x", "in", "labels", "]...	42.227273	17.454545
def segmentlistdict(self): """ A segmentlistdict object describing the instruments and time spanned by this CacheEntry. A new object is constructed each time this attribute is accessed (segments are immutable so there is no reason to try to share a reference to the CacheEntry's internal segment; modifica...	[ "def", "segmentlistdict", "(", "self", ")", ":", "# the import has to be done here to break the cyclic", "# dependancy", "from", "pycbc_glue", ".", "ligolw", ".", "lsctables", "import", "instrument_set_from_ifos", "instruments", "=", "instrument_set_from_ifos", "(", "self", ...	43.90625	28.84375
def file_url(self, entity_id, filename, channel=None): '''Generate a URL for a file in an archive without requesting it. @param entity_id The ID of the entity to look up. @param filename The name of the file in the archive. @param channel Optional channel name. ''' url =...	[ "def", "file_url", "(", "self", ",", "entity_id", ",", "filename", ",", "channel", "=", "None", ")", ":", "url", "=", "'{}/{}/archive/{}'", ".", "format", "(", "self", ".", "url", ",", "_get_path", "(", "entity_id", ")", ",", "filename", ")", "return", ...	46.1	19.9
def transform_value(self, value): """Convert the value to be stored. This does nothing by default but subclasses can change this. Then the index will be able to filter on the transformed value. For example if the transform capitalizes some text, the filter would be ``myfield__ca...	[ "def", "transform_value", "(", "self", ",", "value", ")", ":", "if", "not", "self", ".", "transform", ":", "return", "value", "try", ":", "# we store a staticmethod but we accept a method taking `self` and `value`", "return", "self", ".", "transform", "(", "self", "...	38.555556	21.277778
async def get_match(self, m_id, force_update=False) -> Match: """ get a single match by id \|methcoro\| Args: m_id: match id force_update (default=False): True to force an update to the Challonge API Returns: Match Raises: APIExce...	[ "async", "def", "get_match", "(", "self", ",", "m_id", ",", "force_update", "=", "False", ")", "->", "Match", ":", "found_m", "=", "self", ".", "_find_match", "(", "m_id", ")", "if", "force_update", "or", "found_m", "is", "None", ":", "await", "self", ...	24.190476	21.285714
def smeft_evolve_leadinglog(C_in, scale_in, scale_out, newphys=True): """Solve the SMEFT RGEs in the leading log approximation. Input C_in and output C_out are dictionaries of arrays.""" C_out = deepcopy(C_in) b = beta.beta(C_out, newphys=newphys) for k, C in C_out.items(): C_out[k] = C + b...	[ "def", "smeft_evolve_leadinglog", "(", "C_in", ",", "scale_in", ",", "scale_out", ",", "newphys", "=", "True", ")", ":", "C_out", "=", "deepcopy", "(", "C_in", ")", "b", "=", "beta", ".", "beta", "(", "C_out", ",", "newphys", "=", "newphys", ")", "for"...	41.666667	16.444444
def _findrange(parlist,roots=['JUMP','DMXR1_','DMXR2_','DMX_','efac','log10_efac']): """Rewrite a list of parameters name by detecting ranges (e.g., JUMP1, JUMP2, ...) and compressing them.""" rootdict = {root: [] for root in roots} res = [] for par in parlist: found = False for ro...	[ "def", "_findrange", "(", "parlist", ",", "roots", "=", "[", "'JUMP'", ",", "'DMXR1_'", ",", "'DMXR2_'", ",", "'DMX_'", ",", "'efac'", ",", "'log10_efac'", "]", ")", ":", "rootdict", "=", "{", "root", ":", "[", "]", "for", "root", "in", "roots", "}",...	38.44	23
def com_google_fonts_check_metadata_valid_filename_values(font, family_metadata): """METADATA.pb font.filename field contains font name in right format?""" expected = os.path.basename(font) failed = True for font_metadata in family_metadata.fonts: if...	[ "def", "com_google_fonts_check_metadata_valid_filename_values", "(", "font", ",", "family_metadata", ")", ":", "expected", "=", "os", ".", "path", ".", "basename", "(", "font", ")", "failed", "=", "True", "for", "font_metadata", "in", "family_metadata", ".", "font...	44.642857	17.428571
def _init_map(self): """stub""" super(edXAssetContentFormRecord, self)._init_map() AssetContentTextFormRecord._init_map(self) FilesFormRecord._init_map(self) ProvenanceFormRecord._init_map(self)	[ "def", "_init_map", "(", "self", ")", ":", "super", "(", "edXAssetContentFormRecord", ",", "self", ")", ".", "_init_map", "(", ")", "AssetContentTextFormRecord", ".", "_init_map", "(", "self", ")", "FilesFormRecord", ".", "_init_map", "(", "self", ")", "Proven...	38.166667	8.833333
def single_request_timeout(self, value): """The timeout (seconds) for a single HTTP REST API request.""" check_type(value, int) assert value is None or value > 0 self._single_request_timeout = value	[ "def", "single_request_timeout", "(", "self", ",", "value", ")", ":", "check_type", "(", "value", ",", "int", ")", "assert", "value", "is", "None", "or", "value", ">", "0", "self", ".", "_single_request_timeout", "=", "value" ]	45.2	3
def logical_name(self): """The logical name of the seat. This is an identifier to group sets of devices within the compositor. Returns: str: The logical name of this seat. """ pchar = self._libinput.libinput_seat_get_logical_name(self._handle) return string_at(pchar).decode()	[ "def", "logical_name", "(", "self", ")", ":", "pchar", "=", "self", ".", "_libinput", ".", "libinput_seat_get_logical_name", "(", "self", ".", "_handle", ")", "return", "string_at", "(", "pchar", ")", ".", "decode", "(", ")" ]	25.818182	21.363636
def _data(self, asa=None): """ Returns the contents of the node: a dataframe or a file path, or passes the node and its contents to a callable. """ if asa is not None: if self._store is None or self._hashes is None: msg = ( "Can onl...	[ "def", "_data", "(", "self", ",", "asa", "=", "None", ")", ":", "if", "asa", "is", "not", "None", ":", "if", "self", ".", "_store", "is", "None", "or", "self", ".", "_hashes", "is", "None", ":", "msg", "=", "(", "\"Can only use asa functions with built...	45.695652	18.565217
def _compute_grover_oracle_matrix(bitstring_map: Dict[str, int]) -> np.ndarray: """ Computes the unitary matrix that encodes the oracle function for Grover's algorithm :param bitstring_map: dict with string keys corresponding to bitstrings, and integer values corresponding to the desir...	[ "def", "_compute_grover_oracle_matrix", "(", "bitstring_map", ":", "Dict", "[", "str", ",", "int", "]", ")", "->", "np", ".", "ndarray", ":", "n_bits", "=", "len", "(", "list", "(", "bitstring_map", ".", "keys", "(", ")", ")", "[", "0", "]", ")", "or...	49.4375	22.3125
def _build_body_schema(serializer, body_parameters): """ body is built differently, since it's a single argument no matter what. """ description = "" if isinstance(body_parameters, Param): schema = serializer.to_json_schema(body_parameters.arginfo.type) description = body_parameters.descript...	[ "def", "_build_body_schema", "(", "serializer", ",", "body_parameters", ")", ":", "description", "=", "\"\"", "if", "isinstance", "(", "body_parameters", ",", "Param", ")", ":", "schema", "=", "serializer", ".", "to_json_schema", "(", "body_parameters", ".", "ar...	34.9375	14.84375
def phase_diff(self, phase): '''Compute the phase differential along a given axis Parameters ---------- phase : np.ndarray Input phase (in radians) Returns ------- dphase : np.ndarray like `phase` The phase differential. ''' ...	[ "def", "phase_diff", "(", "self", ",", "phase", ")", ":", "if", "self", ".", "conv", "is", "None", ":", "axis", "=", "0", "elif", "self", ".", "conv", "in", "(", "'channels_last'", ",", "'tf'", ")", ":", "axis", "=", "0", "elif", "self", ".", "co...	29.875	16.625
def insort_event_right(self, event, lo=0, hi=None): """Insert event in queue, and keep it sorted assuming queue is sorted. If event is already in queue, insert it to the right of the rightmost event (to keep FIFO order). Optional args lo (default 0) and hi (default len(a)) bound the slice of a to ...	[ "def", "insort_event_right", "(", "self", ",", "event", ",", "lo", "=", "0", ",", "hi", "=", "None", ")", ":", "if", "lo", "<", "0", ":", "raise", "ValueError", "(", "'lo must be non-negative'", ")", "if", "hi", "is", "None", ":", "hi", "=", "len", ...	28.5	20.958333
def wait(self, args, kwargs): """Wait for the completion event to be set.""" if _debug: IOCB._debug("wait(%d) %r %r", self.ioID, args, kwargs) # waiting from a non-daemon thread could be trouble return self.ioComplete.wait(args, **kwargs)	[ "def", "wait", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "if", "_debug", ":", "IOCB", ".", "_debug", "(", "\"wait(%d) %r %r\"", ",", "self", ".", "ioID", ",", "args", ",", "kwargs", ")", "# waiting from a non-daemon thread could be ...	45	18.666667
def top_path(sources, sinks, net_flux): """ Use the Dijkstra algorithm for finding the shortest path connecting a set of source states from a set of sink states. Parameters ---------- sources : array_like, int One-dimensional list of nodes to define the source states. sinks : array_...	[ "def", "top_path", "(", "sources", ",", "sinks", ",", "net_flux", ")", ":", "sources", "=", "np", ".", "array", "(", "sources", ",", "dtype", "=", "np", ".", "int", ")", ".", "reshape", "(", "(", "-", "1", ",", ")", ")", "sinks", "=", "np", "."...	37.269565	23.33913
def peak_interval(data, alpha=_alpha, npoints=_npoints): """ Identify interval using Gaussian kernel density estimator. """ peak = kde_peak(data,npoints) x = np.sort(data.flat); n = len(x) # The number of entries in the interval window = int(np.rint((1.0-alpha)*n)) # The start, stop, and...	[ "def", "peak_interval", "(", "data", ",", "alpha", "=", "_alpha", ",", "npoints", "=", "_npoints", ")", ":", "peak", "=", "kde_peak", "(", "data", ",", "npoints", ")", "x", "=", "np", ".", "sort", "(", "data", ".", "flat", ")", "n", "=", "len", "...	36.55	10.35
def deflections_from_grid(self, grid, **kwargs): """ Calculate the deflection angles at a given set of arc-second gridded coordinates. Parameters ---------- grid : grids.RegularGrid The grid of (y,x) arc-second coordinates the deflection angles are computed on. ...	[ "def", "deflections_from_grid", "(", "self", ",", "grid", ",", "", "", "kwargs", ")", ":", "eta", "=", "np", ".", "multiply", "(", "1.", "/", "self", ".", "scale_radius", ",", "self", ".", "grid_to_grid_radii", "(", "grid", ")", ")", "deflection_grid",...	38.533333	30.666667
def _replaces(self): """tge""" return {concat(a, c, b[1:]) for a, b in self.slices[:-1] for c in ALPHABET}	[ "def", "_replaces", "(", "self", ")", ":", "return", "{", "concat", "(", "a", ",", "c", ",", "b", "[", "1", ":", "]", ")", "for", "a", ",", "b", "in", "self", ".", "slices", "[", ":", "-", "1", "]", "for", "c", "in", "ALPHABET", "}" ]	30	7
def is_encodable(self, typ: TypeStr, arg: Any) -> bool: """ Determines if the python value ``arg`` is encodable as a value of the ABI type ``typ``. :param typ: A string representation for the ABI type against which the python value ``arg`` will be checked e.g. ``'uint256'``,...	[ "def", "is_encodable", "(", "self", ",", "typ", ":", "TypeStr", ",", "arg", ":", "Any", ")", "->", "bool", ":", "encoder", "=", "self", ".", "_registry", ".", "get_encoder", "(", "typ", ")", "try", ":", "encoder", ".", "validate_value", "(", "arg", "...	33.615385	20.230769
def map_psmnrcol_to_quantcol(quantcols, psmcols, tablefn_map): """This function yields tuples of table filename, isobaric quant column and if necessary number-of-PSM column""" if not psmcols: for fn in quantcols: for qcol in quantcols[fn]: yield (tablefn_map[fn], qcol) ...	[ "def", "map_psmnrcol_to_quantcol", "(", "quantcols", ",", "psmcols", ",", "tablefn_map", ")", ":", "if", "not", "psmcols", ":", "for", "fn", "in", "quantcols", ":", "for", "qcol", "in", "quantcols", "[", "fn", "]", ":", "yield", "(", "tablefn_map", "[", ...	42.272727	12.909091
def serialize_to_bundle(self, transformer, path, model_name, serialize_node=True): """ :type transformer: sklearn.tree.tree.BaseDecisionTree :type path: str :type model_name: str :type serialize_node: bool :param transformer: :param path: :param model_name...	[ "def", "serialize_to_bundle", "(", "self", ",", "transformer", ",", "path", ",", "model_name", ",", "serialize_node", "=", "True", ")", ":", "# Define attributes", "attributes", "=", "list", "(", ")", "attributes", ".", "append", "(", "(", "'num_features'", ",...	35.375	20.625
def center_plot(self, ax): """ Centers and keep the aspect ratio in a 3D representation. Created to help higher classes to manage cascade representation of multiple lower objects. :param ax: Axes to apply the method. :type ax: mplot3d.Axes3D ...	[ "def", "center_plot", "(", "self", ",", "ax", ")", ":", "# Domain\r", "domain", "=", "self", ".", "get_domain", "(", ")", "bound", "=", "np", ".", "max", "(", "domain", "[", "1", "]", "-", "domain", "[", "0", "]", ")", "centroid", "=", "self", "....	33.181818	15.818182
def sys_mmap_pgoff(self, address, size, prot, flags, fd, offset): """Wrapper for mmap2""" return self.sys_mmap2(address, size, prot, flags, fd, offset)	[ "def", "sys_mmap_pgoff", "(", "self", ",", "address", ",", "size", ",", "prot", ",", "flags", ",", "fd", ",", "offset", ")", ":", "return", "self", ".", "sys_mmap2", "(", "address", ",", "size", ",", "prot", ",", "flags", ",", "fd", ",", "offset", ...	55	18
def setParamValue(self, row, *kwargs): """Sets the arguments as field=val for parameter indexed by row* :param row: the ith parameter number :type row: int """ param = self._parameters[row] for key, val in kwargs.items(): param[key] = val	[ "def", "setParamValue", "(", "self", ",", "row", ",", "", "", "kwargs", ")", ":", "param", "=", "self", ".", "_parameters", "[", "row", "]", "for", "key", ",", "val", "in", "kwargs", ".", "items", "(", ")", ":", "param", "[", "key", "]", "=", ...	30	9.5

def round(self, ndigits=0): """ Rounds the amount using the current ``Decimal`` rounding algorithm. """ if ndigits is None: ndigits = 0 return self.__class__( amount=self.amount.quantize(Decimal('1e' + str(-ndigits))), currency=self.currency)

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def _make_input(self, action, old_quat): """ Helper function that returns a dictionary with keys dpos, rotation from a raw input array. The first three elements are taken to be displacement in position, and a quaternion indicating the change in rotation with respect to @old_quat. ...

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def bump(args: argparse.Namespace) -> None: """ :args: An argparse.Namespace object. This function is bound to the 'bump' sub-command. It increments the version integer of the user's choice ('major', 'minor', or 'patch'). """ try: last_tag = last_git_release_tag(git_tags()) except N...

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def stitch_block_rows(block_list): ''' Stitches blocks together into a single block rowwise. These blocks are 2D tables usually generated from tableproc. The final block will be of dimensions (sum(num_rows), max(num_cols)). ''' stitched = list(itertools.chain(*block_list)) max_length = max...

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def load_stock_links(self): """ Read stock links into the model """ links = self.__get_session().query(dal.AssetClassStock).all() for entity in links: # log(DEBUG, f"adding {entity.symbol} to {entity.assetclassid}") # mapping stock: Stock = Stock(entity.symbol...

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def freeze(wait, force_kill): '''Freeze manager.''' if wait and force_kill: print('You cannot use both --wait and --force-kill options ' 'at the same time.', file=sys.stderr) return with Session() as session: if wait: while True: resp = sess...

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def read_tx_body(ptr, tx): """ Returns {'ins': [...], 'outs': [...]} """ _obj = {"ins": [], "outs": [], 'locktime': None} # number of inputs ins = read_var_int(ptr, tx) # all inputs for i in range(ins): _obj["ins"].append({ "outpoint": { "hash": read...

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def _try_b32_decode(v): """ Attempt to decode a b32-encoded username which is sometimes generated by internal Globus components. The expectation is that the string is a valid ID, username, or b32-encoded name. Therefore, we can do some simple checking on it. If it does not appear to be formatt...

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def get_config_tuple_from_egrc(egrc_path): """ Create a Config named tuple from the values specified in the .egrc. Expands any paths as necessary. egrc_path must exist and point a file. If not present in the .egrc, properties of the Config are returned as None. """ with open(egrc_path, 'r'...

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20.921875

def tag_autocomplete_js(format_string=None): """format_string should be ``app_label model counts`` renders 'tagging_ext/tag_autocomplete_js.html""" if format_string: context_list = format_string.split(' ') context = { 'app_label':context_list[0],'model':context_list[1], 'cou...

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def compute_integrated_acquisition_withGradients(acquisition,x): ''' Used to compute the acquisition function with gradients when samples of the hyper-parameters have been generated (used in GP_MCMC model). :param acquisition: acquisition function with GpyOpt model type GP_MCMC. :param x: location wher...

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def _render_item(self, depth, key, value = None, **settings): """ Format single list item. """ strptrn = self.INDENT * depth lchar = self.lchar(settings[self.SETTING_LIST_STYLE]) s = self._es_text(settings, settings[self.SETTING_LIST_FORMATING]) lchar = self.fmt...

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def _expand_formula_(formula_string): """ Accounts for the many ways a user may write a formula string, and returns an expanded chemical formula string. Assumptions: -The Chemical Formula string it is supplied is well-written, and has no hanging parethneses -The number of repeats occurs after the el...

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def run_location(self, value): """The run_location property. Args: value (string). the property value. """ if value == self._defaults['runLocation'] and 'runLocation' in self._values: del self._values['runLocation'] else: self._values[...

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def compute_file_hashes(file_path, hashes=frozenset(['md5'])): """ Digests data read from file denoted by file_path. """ if not os.path.exists(file_path): logging.warning("%s does not exist" % file_path) return else: logging.debug("Computing [%s] hashes for file [%s]" % ('...

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36.25

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def refresh_products(self, **kwargs): """ Refresh a product's cached info. Basically calls product_get with the passed arguments, and tries to intelligently update our product cache. For example, if we already have cached info for product=foo, and you pass in names=["bar...

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def set_result(self, job_id, result): """Set the result for a job. This will overwrite any existing results for the job. Args: job_id: The ID of the WorkItem to set the result for. result: A WorkResult indicating the result of the job. Raises: KeyError: ...

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18.318182

def ethnicities_clean(): """ Get dictionary of unformatted ethnicity types mapped to clean corresponding ethnicity strings """ eths_clean = {} fname = pkg_resources.resource_filename(__name__, 'resources/Ethnicity_Groups.csv') with open(fname, 'rU') as csvfile: reader = csv.reader(csvfile, delimiter = ',')...

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32.411765

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def generate_table_from(data): "Output a nicely formatted ascii table" table = Texttable(max_width=120) table.add_row(["view", "method", "status", "count", "minimum", "maximum", "mean", "stdev", "queries", "querytime"]) table.set_cols_align(["l", "l", "l", "r", "r", "r", "r", "r", "r", "r"]) for i...

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46.565217

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def appliance_time_and_locale_configuration(self): """ Gets the ApplianceTimeAndLocaleConfiguration API client. Returns: ApplianceTimeAndLocaleConfiguration: """ if not self.__appliance_time_and_locale_configuration: self.__appliance_time_and_locale_confi...

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43.8

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def tagReportCallback(llrpMsg): """Function to run each time the reader reports seeing tags.""" global tagReport tags = llrpMsg.msgdict['RO_ACCESS_REPORT']['TagReportData'] if len(tags): logger.info('saw tag(s): %s', pprint.pformat(tags)) else: logger.info('no tags seen') ret...

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40.15

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def _get_deltas(self, rake): """ Return the value of deltas (delta_R, delta_S, delta_V, delta_I), as defined in "Table 5: Model 1" pag 198 """ # delta_R = 1 for reverse focal mechanism (45<rake<135) # and for interface events, 0 for all other events # delta_S = 1 ...

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def minimize_matrix(self): """ This method finds and returns the permutations that produce the lowest ewald sum calls recursive function to iterate through permutations """ if self._algo == EwaldMinimizer.ALGO_FAST or \ self._algo == EwaldMinimizer.ALGO_BE...

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def save_as_plt(self, fname, pixel_array=None, vmin=None, vmax=None, cmap=None, format=None, origin=None): """ This method saves the image from a numpy array using matplotlib :param fname: Location and name of the image file to be saved. :param pixel_array: Numpy pixel array, i.e. ``num...

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37.9

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def process_full_position(data, header, var_only=False): """ Return genetic data when all alleles called on same line. Returns an array containing one item, a tuple of five items: (string) chromosome (string) start position (1-based) (array of strings) matching dbSNP entries ...

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37.056604

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def diff_aff(self): """Symmetric diffusion affinity matrix Return or calculate the symmetric diffusion affinity matrix .. math:: A(x,y) = K(x,y) (d(x) d(y))^{-1/2} where :math:`d` is the degrees (row sums of the kernel.) Returns ------- diff_aff : array-like,...

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36.956522

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def seed_url(self): """A URL that can be used to open the page. The URL is formatted from :py:attr:`URL_TEMPLATE`, which is then appended to :py:attr:`base_url` unless the template results in an absolute URL. :return: URL that can be used to open the page. :rtype: str ...

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30.21875

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def main(*argv): """ main driver of program """ try: adminUsername = argv[0] adminPassword = argv[1] siteURL = argv[2] username = argv[3] groupName = argv[4] # Logic # # Connect to AGOL # sh = arcrest.AGOLTokenSecurityHandler(ad...

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18.181818

def rows(self): """ Return/yield tuples or lists corresponding to each row to be inserted. """ with self.input().open('r') as fobj: for line in fobj: yield line.strip('\n').split('\t')

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34

12.571429

def move_up(self): """Move up one level in the hierarchy, unless already on top.""" if self.current_item.parent is not None: self.current_item = self.current_item.parent for f in self._hooks["up"]: f(self) if self.current_item is self.root: for f in s...

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33.818182

13.818182

def get_time_index_range(self, date_search_start=None, date_search_end=None, time_index_start=None, time_index_end=None, time_index=None): """ Generates a time...

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40.94958

20.563025

def deploy_app(self, site_folder, runtime_type=''): ''' a method to deploy a static html page to heroku using php ''' title = '%s.deploy_php' % self.__class__.__name__ # validate inputs input_fields = { 'site_folder': site_folder, 'runtime_type': runtime_t...

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41.958333

20.275

def resample(self, indexer: Optional[Mapping[Hashable, str]] = None, skipna=None, closed: Optional[str] = None, label: Optional[str] = None, base: int = 0, keep_attrs: Optional[bool] = None, loffset=None, **indexer_kwargs: str): ...

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43.129032

22.072581

def stop_button_click_handler(self): """Method to handle what to do when the stop button is pressed""" self.stop_button.setDisabled(True) # Interrupt computations or stop debugging if not self.shellwidget._reading: self.interrupt_kernel() else: self...

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43.5

7.5

def follow(self, login): """Make the authenticated user follow login. :param str login: (required), user to follow :returns: bool """ resp = False if login: url = self._build_url('user', 'following', login) resp = self._boolean(self._put(url), 204...

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def create_metric_definition(self, metric_type, metric_id, **tags): """ Create metric definition with custom definition. **tags should be a set of tags, such as units, env .. :param metric_type: MetricType of the new definition :param metric_id: metric_id is the string index of ...

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34.821429

19.392857

def set(self, key: Any, value: Any) -> None: """ Sets the value of a key to a supplied value """ if key is not None: self[key] = value

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39.75

7

async def send_heartbeat(self, name): """Send a heartbeat for a service. Args: name (string): The name of the service to send a heartbeat for """ await self.send_command(OPERATIONS.CMD_HEARTBEAT, {'name': name}, MESSAGES.HeartbeatResponse, ti...

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35.777778

23.222222

def _brahmic(data, scheme_map, **kw): """Transliterate `data` with the given `scheme_map`. This function is used when the source scheme is a Brahmic scheme. :param data: the data to transliterate :param scheme_map: a dict that maps between characters in the old scheme and characters in the...

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34.064103

20.871795

def p_CommentOrEmptyLineList(p): ''' CommentOrEmptyLineList : | CommentOrEmptyLine | CommentOrEmptyLineList CommentOrEmptyLine ''' if len(p) <= 1: p[0] = CommentOrEmptyLineList(None, None) elif len(p) <= 2: p[0] = CommentOrEmptyL...

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32.333333

18.5

def _compute_projection(self, X, W): """Compute the LPP projection matrix Parameters ---------- X : array_like, (n_samples, n_features) The input data W : array_like or sparse matrix, (n_samples, n_samples) The precomputed adjacency matrix Return...

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32.833333

18.875

def start_event_loop_qt4(app=None): """Start the qt4 event loop in a consistent manner.""" if app is None: app = get_app_qt4(['']) if not is_event_loop_running_qt4(app): app._in_event_loop = True app.exec_() app._in_event_loop = False else: app._in_event_loop = Tr...

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31.3

10.9

def focusOutEvent( self, event ): """ Overloads the focus out event to cancel editing when the widget loses focus. :param event | <QFocusEvent> """ super(XNavigationEdit, self).focusOutEvent(event) self.cancelEdit()

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28.5

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def updateCurrentValue(self, value): """ Disables snapping during the current value update to ensure a smooth transition for node animations. Since this can only be called via code, we don't need to worry about snapping to the grid for a user. """ xsnap = None ys...

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39.047619

18.571429

def get_votes_comment(self, *args, **kwargs): """ :allowed_param: 'commentId' """ return bind_api( api=self, path='/comments/{commentId}/votes', payload_type='vote', payload_list=True, allowed_param=['commentId'] )(*args, **kwar...

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31.4

8

def pec(self, value): """True if Packet Error Codes (PEC) are enabled""" pec = bool(value) if pec != self._pec: if ioctl(self._fd, SMBUS.I2C_PEC, pec): raise IOError(ffi.errno) self._pec = pec

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35.714286

10

def other_set_producer(socket, which_set, image_archive, patch_archive, groundtruth): """Push image files read from the valid/test set TAR to a socket. Parameters ---------- socket : :class:`zmq.Socket` PUSH socket on which to send images. which_set : str Whic...

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44.111111

19.333333

def fill_key_info(self, key_info, signature_method): """ Fills the KeyInfo node :param key_info: KeyInfo node :type key_info: lxml.etree.Element :param signature_method: Signature node to use :type signature_method: str :return: None """ x509_data...

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42.62069

14

def kill(self, unique_id, configs=None): """ Issues a kill -9 to the specified process calls the deployers get_pid function for the process. If no pid_file/pid_keyword is specified a generic grep of ps aux command is executed on remote machine based on process parameters which may not be reliable if mor...

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52

23.555556

def fit(self, values, bins): """ Fit the transform using the given values (in our case ic50s). Parameters ---------- values : ic50 values bins : bins for the cumulative distribution function Anything that can be passed to numpy.histogram's "bins" argument ...

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36.428571

16.619048

def to_glyphs_background_image(self, ufo_glyph, layer): """Copy the background image from the UFO Glyph to the GSLayer.""" ufo_image = ufo_glyph.image if ufo_image.fileName is None: return image = self.glyphs_module.GSBackgroundImage() image.path = ufo_image.fileName image.transform = Tr...

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41.875

8.875

def items(self, folder_id, subfolder_id, ann_id=None): '''Yields an unodered generator of items in a subfolder. The generator yields items, which are represented by a tuple of ``content_id`` and ``subtopic_id``. The format of these identifiers is unspecified. By default (with `...

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43.413793

18.172414

def from_json(json): """Creates a Track from a JSON file. No preprocessing is done. Arguments: json: map with the keys: name (optional) and segments. Return: A track instance """ segments = [Segment.from_json(s) for s in json['segments']] ...

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30.333333

20.083333

def phrase_replace(self, replace_dict): """ Replace phrases with single token, mapping defined in replace_dict """ def r(tokens): text = ' ' + ' '.join(tokens) for k, v in replace_dict.items(): text = text.replace(...

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35

17.166667

def unexpanduser(path): r""" Replaces home directory with '~' """ homedir = expanduser('~') if path.startswith(homedir): path = '~' + path[len(homedir):] return path

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23.75

8.125

def load_segment(self, f, is_irom_segment=False): """ Load the next segment from the image file """ file_offs = f.tell() (offset, size) = struct.unpack('<II', f.read(8)) self.warn_if_unusual_segment(offset, size, is_irom_segment) segment_data = f.read(size) if len(segment...

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52.727273

18.818182

def load_values(self): """ Go through the env var map, transferring the values to this object as attributes. :raises: RuntimeError if a required env var isn't defined. """ for config_name, evar in self.evar_defs.items(): if evar.is_required and evar.name not...

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43.703704

18.222222

def _dispense_during_transfer(self, vol, loc, **kwargs): """ Performs a :any:`dispense` when running a :any:`transfer`, and optionally a :any:`mix`, :any:`touch_tip`, and/or :any:`blow_out` afterwards. """ mix_after = kwargs.get('mix_after', (0, 0)) rate = kwargs....

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36.625

14.25

def cred_def_id(self, issuer_did: str, schema_seq_no: int) -> str: """ Return credential definition identifier for input issuer DID and schema sequence number. :param issuer_did: DID of credential definition issuer :param schema_seq_no: schema sequence number :return: credential...

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39.230769

21.846154

def apply_attribute(node: Node, attr: XmlAttr): """Maps xml attribute to instance node property and setups bindings""" setter = get_setter(attr) stripped_value = attr.value.strip() if attr.value else '' if is_expression(stripped_value): (binding_type, expr_body) = parse_expression(stripped_value...

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51.555556

17.777778

def check_auth(user): ''' Check if the user should or shouldn't be inside the system: - If the user is staff or superuser: LOGIN GRANTED - If the user has a Person and it is not "disabled": LOGIN GRANTED - Elsewhere: LOGIN DENIED ''' # Initialize authentication auth = None person = ...

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34.472222

22.138889

def _create_array(self, arr: np.ndarray) -> int: """Returns the handle of a RawArray created from the given numpy array. Args: arr: A numpy ndarray. Returns: The handle (int) of the array. Raises: ValueError: if arr is not a ndarray or of an unsupported d...

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34.358974

21.333333

def collapse_focussed(self): """ Collapse currently focussed position; works only if the underlying tree allows it. """ if implementsCollapseAPI(self._tree): w, focuspos = self.get_focus() self._tree.collapse(focuspos) self._walker.clear_cache(...

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33.9

8.7

def _send_bootstrap_request(self, request): """Make a request using an ephemeral broker connection This routine is used to make broker-unaware requests to get the initial cluster metadata. It cycles through the configured hosts, trying to connect and send the request to each in turn. Th...

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43.479167

26.25

def filter(self, dict_name, priority_min='-inf', priority_max='+inf', start=0, limit=None): '''Get a subset of a dictionary. This retrieves only keys with priority scores greater than or equal to `priority_min` and less than or equal to `priority_max`. Of those keys, it s...

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41.5

21.558824

def clip(dataset, normal='x', origin=None, invert=True): """ Clip a dataset by a plane by specifying the origin and normal. If no parameters are given the clip will occur in the center of that dataset Parameters ---------- normal : tuple(float) or str Length ...

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39.029412

19.558824

def has_space(self, length=1, offset=0): """Returns boolean if self.pos + length < working string length.""" return self.pos + (length + offset) - 1 < self.length

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58.666667

7

def script_post_save(model, os_path, contents_manager, **kwargs): """convert notebooks to Python script after save with nbconvert replaces `ipython notebook --script` """ from nbconvert.exporters.script import ScriptExporter if model['type'] != 'notebook': return global _script_export...

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32.36

22.2

def decorate(func, caller, extras=()): """ decorate(func, caller) decorates a function using a caller. """ evaldict = dict(_call_=caller, _func_=func) es = '' for i, extra in enumerate(extras): ex = '_e%d_' % i evaldict[ex] = extra es += ex + ', ' fun = FunctionMaker....

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32.0625

11.3125

def update_access_key(self, access_key_id, status, user_name=None): """ Changes the status of the specified access key from Active to Inactive or vice versa. This action can be used to disable a user's key as part of a key rotation workflow. If the user_name is not specified, t...

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37

20.166667

def _fix_call_activities_signavio(self, bpmn, filename): """ Signavio produces slightly invalid BPMN for call activity nodes... It is supposed to put a reference to the id of the called process in to the calledElement attribute. Instead it stores a string (which is the name of th...

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51.4

20.3

def _calc_hash_da(self, rs): """Compute hash of D and A timestamps for single-step D+A case. """ self.hash_d = hash_(rs.get_state())[:6] self.hash_a = self.hash_d

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38

5.2

def host_domains(self, ip=None, limit=None, **kwargs): """Pass in an IP address.""" return self._results('reverse-ip', '/v1/{0}/host-domains'.format(ip), limit=limit, **kwargs)

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def print_cm(cm, labels, hide_zeroes=False, hide_diagonal=False, hide_threshold=None): """pretty print for confusion matrixes""" columnwidth = max([len(x) for x in labels] + [5]) # 5 is value length empty_cell = " " * columnwidth # Print header print(" " + empty_cell, end=" ") for label in l...

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def segmentlistdict(self): """ A segmentlistdict object describing the instruments and time spanned by this CacheEntry. A new object is constructed each time this attribute is accessed (segments are immutable so there is no reason to try to share a reference to the CacheEntry's internal segment; modifica...

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def file_url(self, entity_id, filename, channel=None): '''Generate a URL for a file in an archive without requesting it. @param entity_id The ID of the entity to look up. @param filename The name of the file in the archive. @param channel Optional channel name. ''' url =...

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46.1

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def transform_value(self, value): """Convert the value to be stored. This does nothing by default but subclasses can change this. Then the index will be able to filter on the transformed value. For example if the transform capitalizes some text, the filter would be ``myfield__ca...

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38.555556

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async def get_match(self, m_id, force_update=False) -> Match: """ get a single match by id |methcoro| Args: m_id: match id force_update (default=False): True to force an update to the Challonge API Returns: Match Raises: APIExce...

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24.190476

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def smeft_evolve_leadinglog(C_in, scale_in, scale_out, newphys=True): """Solve the SMEFT RGEs in the leading log approximation. Input C_in and output C_out are dictionaries of arrays.""" C_out = deepcopy(C_in) b = beta.beta(C_out, newphys=newphys) for k, C in C_out.items(): C_out[k] = C + b...

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41.666667

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def _findrange(parlist,roots=['JUMP','DMXR1_','DMXR2_','DMX_','efac','log10_efac']): """Rewrite a list of parameters name by detecting ranges (e.g., JUMP1, JUMP2, ...) and compressing them.""" rootdict = {root: [] for root in roots} res = [] for par in parlist: found = False for ro...

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38.44

23

def com_google_fonts_check_metadata_valid_filename_values(font, family_metadata): """METADATA.pb font.filename field contains font name in right format?""" expected = os.path.basename(font) failed = True for font_metadata in family_metadata.fonts: if...

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def _init_map(self): """stub""" super(edXAssetContentFormRecord, self)._init_map() AssetContentTextFormRecord._init_map(self) FilesFormRecord._init_map(self) ProvenanceFormRecord._init_map(self)

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38.166667

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def single_request_timeout(self, value): """The timeout (seconds) for a single HTTP REST API request.""" check_type(value, int) assert value is None or value > 0 self._single_request_timeout = value

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45.2

3

def logical_name(self): """The logical name of the seat. This is an identifier to group sets of devices within the compositor. Returns: str: The logical name of this seat. """ pchar = self._libinput.libinput_seat_get_logical_name(self._handle) return string_at(pchar).decode()

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25.818182

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def _data(self, asa=None): """ Returns the contents of the node: a dataframe or a file path, or passes the node and its contents to a callable. """ if asa is not None: if self._store is None or self._hashes is None: msg = ( "Can onl...

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def _compute_grover_oracle_matrix(bitstring_map: Dict[str, int]) -> np.ndarray: """ Computes the unitary matrix that encodes the oracle function for Grover's algorithm :param bitstring_map: dict with string keys corresponding to bitstrings, and integer values corresponding to the desir...

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def _build_body_schema(serializer, body_parameters): """ body is built differently, since it's a single argument no matter what. """ description = "" if isinstance(body_parameters, Param): schema = serializer.to_json_schema(body_parameters.arginfo.type) description = body_parameters.descript...

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34.9375

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def phase_diff(self, phase): '''Compute the phase differential along a given axis Parameters ---------- phase : np.ndarray Input phase (in radians) Returns ------- dphase : np.ndarray like `phase` The phase differential. ''' ...

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29.875

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def insort_event_right(self, event, lo=0, hi=None): """Insert event in queue, and keep it sorted assuming queue is sorted. If event is already in queue, insert it to the right of the rightmost event (to keep FIFO order). Optional args lo (default 0) and hi (default len(a)) bound the slice of a to ...

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28.5

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def wait(self, *args, **kwargs): """Wait for the completion event to be set.""" if _debug: IOCB._debug("wait(%d) %r %r", self.ioID, args, kwargs) # waiting from a non-daemon thread could be trouble return self.ioComplete.wait(*args, **kwargs)

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45

18.666667

def top_path(sources, sinks, net_flux): """ Use the Dijkstra algorithm for finding the shortest path connecting a set of source states from a set of sink states. Parameters ---------- sources : array_like, int One-dimensional list of nodes to define the source states. sinks : array_...

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37.269565

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def peak_interval(data, alpha=_alpha, npoints=_npoints): """ Identify interval using Gaussian kernel density estimator. """ peak = kde_peak(data,npoints) x = np.sort(data.flat); n = len(x) # The number of entries in the interval window = int(np.rint((1.0-alpha)*n)) # The start, stop, and...

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36.55

10.35

def deflections_from_grid(self, grid, **kwargs): """ Calculate the deflection angles at a given set of arc-second gridded coordinates. Parameters ---------- grid : grids.RegularGrid The grid of (y,x) arc-second coordinates the deflection angles are computed on. ...

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def _replaces(self): """tge""" return {concat(a, c, b[1:]) for a, b in self.slices[:-1] for c in ALPHABET}

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30

7

def is_encodable(self, typ: TypeStr, arg: Any) -> bool: """ Determines if the python value ``arg`` is encodable as a value of the ABI type ``typ``. :param typ: A string representation for the ABI type against which the python value ``arg`` will be checked e.g. ``'uint256'``,...

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def map_psmnrcol_to_quantcol(quantcols, psmcols, tablefn_map): """This function yields tuples of table filename, isobaric quant column and if necessary number-of-PSM column""" if not psmcols: for fn in quantcols: for qcol in quantcols[fn]: yield (tablefn_map[fn], qcol) ...

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def serialize_to_bundle(self, transformer, path, model_name, serialize_node=True): """ :type transformer: sklearn.tree.tree.BaseDecisionTree :type path: str :type model_name: str :type serialize_node: bool :param transformer: :param path: :param model_name...

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def center_plot(self, ax): """ Centers and keep the aspect ratio in a 3D representation. Created to help higher classes to manage cascade representation of multiple lower objects. :param ax: Axes to apply the method. :type ax: mplot3d.Axes3D ...

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def sys_mmap_pgoff(self, address, size, prot, flags, fd, offset): """Wrapper for mmap2""" return self.sys_mmap2(address, size, prot, flags, fd, offset)

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55

18

def setParamValue(self, row, **kwargs): """Sets the arguments as field=val for parameter indexed by *row* :param row: the ith parameter number :type row: int """ param = self._parameters[row] for key, val in kwargs.items(): param[key] = val

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30

9.5