{"action":"created","issue":{"url":"https://api.github.com/repos/sskutnik/cyborg/issues/13","repository_url":"https://api.github.com/repos/sskutnik/cyborg","labels_url":"https://api.github.com/repos/sskutnik/cyborg/issues/13/labels{/name}","comments_url":"https://api.github.com/repos/sskutnik/cyborg/issues/13/comments","events_url":"https://api.github.com/repos/sskutnik/cyborg/issues/13/events","html_url":"https://github.com/sskutnik/cyborg/issues/13","id":249113811,"number":13,"title":"CYBORG build error with Find_QT","user":{"login":"jbae11","id":20345275,"avatar_url":"https://avatars1.githubusercontent.com/u/20345275?v=4","gravatar_id":"","url":"https://api.github.com/users/jbae11","html_url":"https://github.com/jbae11","followers_url":"https://api.github.com/users/jbae11/followers","following_url":"https://api.github.com/users/jbae11/following{/other_user}","gists_url":"https://api.github.com/users/jbae11/gists{/gist_id}","starred_url":"https://api.github.com/users/jbae11/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jbae11/subscriptions","organizations_url":"https://api.github.com/users/jbae11/orgs","repos_url":"https://api.github.com/users/jbae11/repos","events_url":"https://api.github.com/users/jbae11/events{/privacy}","received_events_url":"https://api.github.com/users/jbae11/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":39,"created_at":"2017-08-09T18:04:26Z","updated_at":"2017-08-14T16:36:35Z","closed_at":null,"body":"After successfully locating the SCALE directory, the CYBORG build outputs this error message:\r\n```\r\ndkadkf@arfc-100 ~/github/cyborg (master) $ python install.py --orglib_root=~/SCALE-6.2.2/data/arplibs\r\n/usr/bin/cmake\r\n-- The C compiler identification is GNU 5.4.0\r\n-- The CXX compiler identification is GNU 5.4.0\r\n-- Check for working C compiler: /usr/bin/cc\r\n-- Check for working C compiler: /usr/bin/cc -- works\r\n-- Detecting C compiler ABI info\r\n-- Detecting C compiler ABI info - done\r\n-- Detecting C compile features\r\n-- Detecting C compile features - done\r\n-- Check for working CXX compiler: /usr/bin/c++\r\n-- Check for working CXX compiler: /usr/bin/c++ -- works\r\n-- Detecting CXX compiler ABI info\r\n-- Detecting CXX compiler ABI info - done\r\n-- Detecting CXX compile features\r\n-- Detecting CXX compile features - done\r\n-- CMake Build type: \r\n-- Using /home/dkadkf/.local as CYCLUS_ROOT_DIR.\r\n-- Found Cyclus Core Headers : /home/dkadkf/.local/include/cyclus\r\n-- Found Cyclus Core Test Headers : /home/dkadkf/.local/include/cyclus\r\n-- Found Cyclus Core Shared Data : /home/dkadkf/.local/share/cyclus\r\n-- Found Cyclus Core Library : /home/dkadkf/.local/lib/libcyclus.so\r\n-- Found Cyclus Test Libraries : /home/dkadkf/.local/lib/cyclus/libgtest.so/home/dkadkf/.local/lib/cyclus/libbaseagentunittests.so\r\n-- LibXML++ find package args: LibXml2;REQUIRED\r\n-- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version \"2.9.3\") \r\n-- LibXML++ find package args: Glibmm;REQUIRED\r\n-- Glibmm find package args: Glib;REQUIRED\r\n-- Found PkgConfig: /usr/bin/pkg-config (found version \"0.29.1\") \r\n-- Checking for module 'glib-2.0'\r\n--   Found glib-2.0, version 2.48.2\r\n-- Found glib-2.0: /home/dkadkf/anaconda3/include/glib-2.0, /home/dkadkf/anaconda3/lib/libglib-2.0.so\r\n-- Glibmm find package args: SigC++;REQUIRED\r\n-- Checking for module 'sigc++-2.0'\r\n--   Found sigc++-2.0, version 2.6.2\r\n-- Found SigC++ \r\n-- Checking for module 'glibmm-2.4'\r\n--   Found glibmm-2.4, version 2.46.3\r\n-- Found Glibmm \r\n-- Checking for module 'libxml++-2.6'\r\n--   Found libxml++-2.6, version 2.40.1\r\n-- Found LibXML++ \r\n--LIBS: /home/dkadkf/.local/lib/libcyclus.so;/usr/lib/x86_64-linux-gnu/libxml++-2.6.so;/usr/lib/x86_64-linux-gnu/libxml2.so;/usr/lib/x86_64-linux-gnu/libglibmm-2.4.so;/home/dkadkf/anaconda3/lib/libglib-2.0.so;/usr/lib/x86_64-linux-gnu/libsigc-2.0.so\r\n--LD_LIBRARY_PATH: \r\n-- Boost version: 1.58.0\r\n-- Found the following Boost libraries:\r\n--   program_options\r\n--   filesystem\r\n--   system\r\n--    Boost Root: \r\n--    Boost Include directory: /usr/include\r\n--    Boost Library directories: /usr/lib/x86_64-linux-gnu\r\n--    Boost Program Options location: /usr/lib/x86_64-linux-gnu/libboost_program_options.so\r\n--    Boost Filesystem location: /usr/lib/x86_64-linux-gnu/libboost_filesystem.so\r\n--    Boost Serialization location: \r\n-- Looking for sgemm_\r\n-- Looking for sgemm_ - found\r\n-- Looking for pthread.h\r\n-- Looking for pthread.h - found\r\n-- Looking for pthread_create\r\n-- Looking for pthread_create - not found\r\n-- Looking for pthread_create in pthreads\r\n-- Looking for pthread_create in pthreads - not found\r\n-- Looking for pthread_create in pthread\r\n-- Looking for pthread_create in pthread - found\r\n-- Found Threads: TRUE  \r\n-- A library with BLAS API found.\r\n-- Looking for cheev_\r\n-- Looking for cheev_ - found\r\n-- A library with LAPACK API found.\r\n\tFound LAPACK Libraries: /usr/lib/liblapack.so;/usr/lib/libblas.so\r\n-- Found HDF5: /home/dkadkf/anaconda3/lib/libhdf5_hl.so;/home/dkadkf/anaconda3/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/dkadkf/anaconda3/lib/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so  \r\n--    HDF5 Root: \r\n--    HDF5 Include directory: /home/dkadkf/anaconda3/include\r\n--    HDF5 Library directories: /home/dkadkf/anaconda3/lib\r\n--    HDF5 Libraries: /home/dkadkf/anaconda3/lib/libhdf5_hl.so;/home/dkadkf/anaconda3/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/dkadkf/anaconda3/lib/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so\r\n-- Found Sqlite3 header file in /home/dkadkf/anaconda3/include\r\n-- Found Sqlite3 libraries: /home/dkadkf/anaconda3/lib/libsqlite3.so\r\n--    SQLITE3 Include directories: /home/dkadkf/anaconda3/include\r\n--    SQLITE3 Libraries: /home/dkadkf/anaconda3/lib/libsqlite3.so\r\nCMake Error at CMakeLists.txt:155 (include):\r\n  include called with wrong number of arguments.  include() only takes one\r\n  file.\r\n\r\n\r\n-- Using /home/dkadkf/SCALE-6.2.2 as SCALE_ROOT_DIR.\r\nSCALE_INCLUDE_DIR: /home/dkadkf/SCALE-6.2.2/include\r\nSCALE JSON LIBRARY: /home/dkadkf/SCALE-6.2.2/lib/libStandard_Json.so\r\n-- Found SCALE Headers: /home/dkadkf/SCALE-6.2.2/include\r\n-- Found SCALE Libraries: /home/dkadkf/SCALE-6.2.2/lib/libScaleUtils_IO.so/home/dkadkf/SCALE-6.2.2/lib/libStandard_Json.so/home/dkadkf/SCALE-6.2.2/lib/libOrigenCore.so/home/dkadkf/SCALE-6.2.2/lib/libOrigenSolver.so\r\n-- Setting ORGLIB_DIR to: /home/dkadkf/SCALE-6.2.2/data/arplibs\r\n-- Starting construction of build files for agent: reactor\r\n-- Copying /home/dkadkf/github/cyborg/src/cyclus_origen_interface.h to /home/dkadkf/github/cyborg/build/cyborg/cyclus_origen_interface.h.\r\n-- Copying /home/dkadkf/github/cyborg/src/orglib_default_location.h to /home/dkadkf/github/cyborg/build/cyborg/orglib_default_location.h.\r\ndstcustomheaders: cyclus_origen_interface.h;orglib_default_location.h\r\n-- Executing /home/dkadkf/.local/include/cyclus/../../bin/cycpp.py /home/dkadkf/github/cyborg/src/reactor.cc --cpp-path=cpp -o=/home/dkadkf/github/cyborg/build/cyborg/reactor.cc --pass3-use-orig -I=:/home/dkadkf/SCALE-6.2.2/include:/home/dkadkf/.local/include/cyclus:/usr/include/libxml++-2.6:/usr/include/glibmm-2.4:/usr/lib/x86_64-linux-gnu/glibmm-2.4/include:/home/dkadkf/anaconda3/include/glib-2.0:/usr/lib/x86_64-linux-gnu/glib-2.0/include:/usr/include/sigc++-2.0:/usr/lib/x86_64-linux-gnu/sigc++-2.0/include:/usr/lib/x86_64-linux-gnu/libxml++-2.6/include:/usr/include:/home/dkadkf/anaconda3/include:/home/dkadkf/anaconda3/include:/home/dkadkf/github/cyborg/src\r\nTraceback (most recent call last):\r\n  File \"/home/dkadkf/.local/include/cyclus/../../bin/cycpp.py\", line 2369, in <module>\r\n    main()\r\n  File \"/home/dkadkf/.local/include/cyclus/../../bin/cycpp.py\", line 2353, in main\r\n    context, superclasses = accumulate_state(canon)   # pass 2\r\n  File \"/home/dkadkf/.local/include/cyclus/../../bin/cycpp.py\", line 908, in accumulate_state\r\n    state.accumulate(statement, sep)\r\n  File \"/home/dkadkf/.local/include/cyclus/../../bin/cycpp.py\", line 714, in accumulate\r\n    filter.transform(statement, sep)\r\n  File \"/home/dkadkf/.local/include/cyclus/../../bin/cycpp.py\", line 475, in transform\r\n    state.var_annotations = self._eval()\r\n  File \"/home/dkadkf/.local/include/cyclus/../../bin/cycpp.py\", line 454, in _eval\r\n    self._add_gbl_proxies(glb, clspaths, val['vars'])\r\nKeyError: 'vars'\r\nCMake Error at /home/dkadkf/.local/share/cyclus/cmake/UseCyclus.cmake:128 (message):\r\n  cycpp failed on '/home/dkadkf/github/cyborg/src/reactor.cc' with exit code\r\n  '1'\r\nCall Stack (most recent call first):\r\n  src/CMakeLists.txt:53 (USE_CYCLUS)\r\n\r\n\r\n-- Configuring incomplete, errors occurred!\r\nSee also \"/home/dkadkf/github/cyborg/build/CMakeFiles/CMakeOutput.log\".\r\nSee also \"/home/dkadkf/github/cyborg/build/CMakeFiles/CMakeError.log\".\r\nTraceback (most recent call last):\r\n  File \"install.py\", line 142, in <module>\r\n    main()\r\n  File \"install.py\", line 139, in main\r\n    install(args)\r\n  File \"install.py\", line 64, in install\r\n    shell=(os.name == 'nt'))\r\n  File \"/home/dkadkf/anaconda3/lib/python3.6/subprocess.py\", line 291, in check_call\r\n    raise CalledProcessError(retcode, cmd)\r\nsubprocess.CalledProcessError: Command '['cmake', '/home/dkadkf/github/cyborg', '-DCMAKE_INSTALL_PREFIX=/home/dkadkf/.local', '-DCYCLUS_ROOT_DIR=/home/dkadkf/.local', '-DUSER_ORGLIB_DIR=/home/dkadkf/SCALE-6.2.2/data/arplibs']' returned non-zero exit status 1.\r\n\r\n```"},"comment":{"url":"https://api.github.com/repos/sskutnik/cyborg/issues/comments/322240742","html_url":"https://github.com/sskutnik/cyborg/issues/13#issuecomment-322240742","issue_url":"https://api.github.com/repos/sskutnik/cyborg/issues/13","id":322240742,"user":{"login":"jbae11","id":20345275,"avatar_url":"https://avatars1.githubusercontent.com/u/20345275?v=4","gravatar_id":"","url":"https://api.github.com/users/jbae11","html_url":"https://github.com/jbae11","followers_url":"https://api.github.com/users/jbae11/followers","following_url":"https://api.github.com/users/jbae11/following{/other_user}","gists_url":"https://api.github.com/users/jbae11/gists{/gist_id}","starred_url":"https://api.github.com/users/jbae11/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jbae11/subscriptions","organizations_url":"https://api.github.com/users/jbae11/orgs","repos_url":"https://api.github.com/users/jbae11/repos","events_url":"https://api.github.com/users/jbae11/events{/privacy}","received_events_url":"https://api.github.com/users/jbae11/received_events","type":"User","site_admin":false},"created_at":"2017-08-14T16:36:34Z","updated_at":"2017-08-14T16:36:34Z","body":"oddly enough, using a system install of Python (I've tried both 2.7 and 3.5) does solve the problem,\r\n\r\nbut still, there is an error during the build:\r\n```\r\ndkadkf@arfc-100 ~/github/cyborg (master) $ python install.py --clean-build --orglib_root=/SCALE/SCALE-6.2-serial-6.2.2-Source/data/arplibs\r\n/usr/bin/cmake\r\n-- The C compiler identification is GNU 5.4.0\r\n-- The CXX compiler identification is GNU 5.4.0\r\n-- Check for working C compiler: /usr/bin/gcc\r\n-- Check for working C compiler: /usr/bin/gcc -- works\r\n-- Detecting C compiler ABI info\r\n-- Detecting C compiler ABI info - done\r\n-- Detecting C compile features\r\n-- Detecting C compile features - done\r\n-- Check for working CXX compiler: /usr/bin/c++\r\n-- Check for working CXX compiler: /usr/bin/c++ -- works\r\n-- Detecting CXX compiler ABI info\r\n-- Detecting CXX compiler ABI info - done\r\n-- Detecting CXX compile features\r\n-- Detecting CXX compile features - done\r\n-- CMake Build type: \r\n-- Using  as CYCLUS_ROOT_DIR.\r\n-- Found Cyclus Core Headers : /home/dkadkf/.local/include/cyclus\r\n-- Found Cyclus Core Test Headers : /home/dkadkf/.local/include/cyclus\r\n-- Found Cyclus Core Shared Data : /home/dkadkf/.local/share/cyclus\r\n-- Found Cyclus Core Library : /home/dkadkf/.local/lib/libcyclus.so\r\n-- Found Cyclus Test Libraries : /home/dkadkf/.local/lib/cyclus/libgtest.so/home/dkadkf/.local/lib/cyclus/libbaseagentunittests.so\r\n-- LibXML++ find package args: LibXml2;REQUIRED\r\n-- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version \"2.9.3\") \r\n-- LibXML++ find package args: Glibmm;REQUIRED\r\n-- Glibmm find package args: Glib;REQUIRED\r\n-- Found PkgConfig: /usr/bin/pkg-config (found version \"0.29.1\") \r\n-- Checking for module 'glib-2.0'\r\n--   Found glib-2.0, version 2.48.2\r\n-- Found glib-2.0: /usr/include/glib-2.0, /usr/lib/x86_64-linux-gnu/libglib-2.0.so\r\n-- Glibmm find package args: SigC++;REQUIRED\r\n-- Checking for module 'sigc++-2.0'\r\n--   Found sigc++-2.0, version 2.6.2\r\n-- Found SigC++ \r\n-- Checking for module 'glibmm-2.4'\r\n--   Found glibmm-2.4, version 2.46.3\r\n-- Found Glibmm \r\n-- Checking for module 'libxml++-2.6'\r\n--   Found libxml++-2.6, version 2.40.1\r\n-- Found LibXML++ \r\n--LIBS: /home/dkadkf/.local/lib/libcyclus.so;/usr/lib/x86_64-linux-gnu/libxml++-2.6.so;/usr/lib/x86_64-linux-gnu/libxml2.so;/usr/lib/x86_64-linux-gnu/libglibmm-2.4.so;/usr/lib/x86_64-linux-gnu/libglib-2.0.so;/usr/lib/x86_64-linux-gnu/libsigc-2.0.so\r\n--LD_LIBRARY_PATH: \r\n-- Boost version: 1.58.0\r\n-- Found the following Boost libraries:\r\n--   program_options\r\n--   filesystem\r\n--   system\r\n--    Boost Root: \r\n--    Boost Include directory: /usr/include\r\n--    Boost Library directories: /usr/lib/x86_64-linux-gnu\r\n--    Boost Program Options location: /usr/lib/x86_64-linux-gnu/libboost_program_options.so\r\n--    Boost Filesystem location: /usr/lib/x86_64-linux-gnu/libboost_filesystem.so\r\n--    Boost Serialization location: \r\n-- Looking for sgemm_\r\n-- Looking for sgemm_ - found\r\n-- Looking for pthread.h\r\n-- Looking for pthread.h - found\r\n-- Looking for pthread_create\r\n-- Looking for pthread_create - not found\r\n-- Looking for pthread_create in pthreads\r\n-- Looking for pthread_create in pthreads - not found\r\n-- Looking for pthread_create in pthread\r\n-- Looking for pthread_create in pthread - found\r\n-- Found Threads: TRUE  \r\n-- A library with BLAS API found.\r\n-- Looking for cheev_\r\n-- Looking for cheev_ - found\r\n-- A library with LAPACK API found.\r\n\tFound LAPACK Libraries: /usr/lib/liblapack.so;/usr/lib/libblas.so\r\n-- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5_hl.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so  \r\n--    HDF5 Root: \r\n--    HDF5 Include directory: /usr/include/hdf5/serial\r\n--    HDF5 Library directories: /usr/lib/x86_64-linux-gnu/hdf5/serial\r\n--    HDF5 Libraries: /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5_hl.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so\r\n-- Found Sqlite3 header file in /usr/lib/include\r\n-- Found Sqlite3 libraries: /usr/lib/x86_64-linux-gnu/libsqlite3.so\r\n--    SQLITE3 Include directories: /usr/lib/include\r\n--    SQLITE3 Libraries: /usr/lib/x86_64-linux-gnu/libsqlite3.so\r\n-- Using /home/dkadkf/SCALE-6.2.2/home/dkadkf/SCALE-6.2.2 as SCALE_ROOT_DIR.\r\n--   SCALE_INCLUDE_DIR: /home/dkadkf/SCALE/SCALE-6.2.2/include\r\n-- Found SCALE Headers: /home/dkadkf/SCALE/SCALE-6.2.2/include\r\n-- Found SCALE Libraries: /home/dkadkf/SCALE/SCALE-6.2.2/lib/libScaleUtils_IO.so/home/dkadkf/SCALE/SCALE-6.2.2/lib/libStandard_Json.so/home/dkadkf/SCALE/SCALE-6.2.2/lib/libOrigenCore.so/home/dkadkf/SCALE/SCALE-6.2.2/lib/libOrigenSolver.so\r\n-- Looking for Q_WS_X11\r\n-- Looking for Q_WS_X11 - found\r\n-- Looking for Q_WS_WIN\r\n-- Looking for Q_WS_WIN - not found\r\n-- Looking for Q_WS_QWS\r\n-- Looking for Q_WS_QWS - not found\r\n-- Looking for Q_WS_MAC\r\n-- Looking for Q_WS_MAC - not found\r\n-- Found Qt4: /usr/bin/qmake-qt4 (found version \"4.8.7\") \r\n--   QT_INCLUDE_DIR: /usr/include/qt4\r\n-- Setting ORGLIB_DIR to: /SCALE/SCALE-6.2-serial-6.2.2-Source/data/arplibs\r\n-- Starting construction of build files for agent: reactor\r\n-- Copying /home/dkadkf/github/cyborg/src/cyclus_origen_interface.h to /home/dkadkf/github/cyborg/build/cyborg/cyclus_origen_interface.h.\r\n-- Copying /home/dkadkf/github/cyborg/src/orglib_default_location.h to /home/dkadkf/github/cyborg/build/cyborg/orglib_default_location.h.\r\ndstcustomheaders: cyclus_origen_interface.h;orglib_default_location.h\r\n-- Executing /home/dkadkf/.local/include/cyclus/../../bin/cycpp.py /home/dkadkf/github/cyborg/src/reactor.cc --cpp-path=cpp -o=/home/dkadkf/github/cyborg/build/cyborg/reactor.cc --pass3-use-orig -I=:/usr/include/qt4:/usr/include/qt4/QtGui:/usr/include/qt4/QtCore:/home/dkadkf/SCALE/SCALE-6.2.2/include:/home/dkadkf/.local/include/cyclus:/usr/include/libxml++-2.6:/usr/include/glibmm-2.4:/usr/lib/x86_64-linux-gnu/glibmm-2.4/include:/usr/include/glib-2.0:/usr/lib/x86_64-linux-gnu/glib-2.0/include:/usr/include/sigc++-2.0:/usr/lib/x86_64-linux-gnu/sigc++-2.0/include:/usr/lib/x86_64-linux-gnu/libxml++-2.6/include:/usr/include:/usr/include/hdf5/serial:/usr/lib/include:/usr/include/qt4:/home/dkadkf/github/cyborg/src\r\n-- Executing /home/dkadkf/.local/include/cyclus/../../bin/cycpp.py /home/dkadkf/github/cyborg/src/reactor.h --cpp-path=cpp -o=/home/dkadkf/github/cyborg/build/cyborg/reactor.h --pass3-use-orig -I=:/usr/include/qt4:/usr/include/qt4/QtGui:/usr/include/qt4/QtCore:/home/dkadkf/SCALE/SCALE-6.2.2/include:/home/dkadkf/.local/include/cyclus:/usr/include/libxml++-2.6:/usr/include/glibmm-2.4:/usr/lib/x86_64-linux-gnu/glibmm-2.4/include:/usr/include/glib-2.0:/usr/lib/x86_64-linux-gnu/glib-2.0/include:/usr/include/sigc++-2.0:/usr/lib/x86_64-linux-gnu/sigc++-2.0/include:/usr/lib/x86_64-linux-gnu/libxml++-2.6/include:/usr/include:/usr/include/hdf5/serial:/usr/lib/include:/usr/include/qt4:/home/dkadkf/github/cyborg/src\r\n-- Copying /home/dkadkf/github/cyborg/src/reactor_tests.h to /home/dkadkf/github/cyborg/build/cyborg/reactor_tests.h.\r\n-- Copying /home/dkadkf/github/cyborg/src/reactor_tests.cc to /home/dkadkf/github/cyborg/build/cyborg/reactor_tests.cc.\r\n-- Finished construction of build files for agent: reactor\r\nCyborg unit tests: /home/dkadkf/github/cyborg/build/cyborg/reactor.cc;/home/dkadkf/github/cyborg/build/cyborg/reactor_tests.cc\r\n-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) \r\n-- WARNING: Doxygen not found - doc won't be created\r\n-- Configuring done\r\nCMake Warning (dev) at /home/dkadkf/.local/share/cyclus/cmake/UseCyclus.cmake:265 (ADD_DEPENDENCIES):\r\n  Policy CMP0046 is not set: Error on non-existent dependency in\r\n  add_dependencies.  Run \"cmake --help-policy CMP0046\" for policy details.\r\n  Use the cmake_policy command to set the policy and suppress this warning.\r\n\r\n  The dependency target \"/home/dkadkf/github/cyborg/build/cyborg/reactor.cc\"\r\n  of target \"cyborg\" does not exist.\r\nCall Stack (most recent call first):\r\n  /home/dkadkf/.local/share/cyclus/cmake/UseCyclus.cmake:256 (INSTALL_AGENT_LIB_)\r\n  src/CMakeLists.txt:55 (INSTALL_CYCLUS_MODULE)\r\nThis warning is for project developers.  Use -Wno-dev to suppress it.\r\n\r\nCMake Warning (dev) at /home/dkadkf/.local/share/cyclus/cmake/UseCyclus.cmake:265 (ADD_DEPENDENCIES):\r\n  Policy CMP0046 is not set: Error on non-existent dependency in\r\n  add_dependencies.  Run \"cmake --help-policy CMP0046\" for policy details.\r\n  Use the cmake_policy command to set the policy and suppress this warning.\r\n\r\n  The dependency target \"/home/dkadkf/github/cyborg/build/cyborg/reactor.h\"\r\n  of target \"cyborg\" does not exist.\r\nCall Stack (most recent call first):\r\n  /home/dkadkf/.local/share/cyclus/cmake/UseCyclus.cmake:256 (INSTALL_AGENT_LIB_)\r\n  src/CMakeLists.txt:55 (INSTALL_CYCLUS_MODULE)\r\nThis warning is for project developers.  Use -Wno-dev to suppress it.\r\n\r\n-- Generating done\r\n-- Build files have been written to: /home/dkadkf/github/cyborg/build\r\nScanning dependencies of target OrigenInterface\r\n[  6%] Building CXX object src/CMakeFiles/OrigenInterface.dir/cyclus_origen_interface.cpp.o\r\n[ 13%] Linking CXX shared library ../lib/libOrigenInterface.so\r\n[ 13%] Built target OrigenInterface\r\nScanning dependencies of target cyborg\r\n[ 20%] Building CXX object src/CMakeFiles/cyborg.dir/__/cyborg/reactor.cc.o\r\n[ 26%] Linking CXX shared library ../lib/cyclus/cyborg/libcyborg.so\r\n[ 46%] Built target cyborg\r\nScanning dependencies of target cyborg_unit_tests\r\n[ 53%] Building CXX object tests/CMakeFiles/cyborg_unit_tests.dir/cyborg_unit_test_driver.cc.o\r\n[ 60%] Building CXX object tests/CMakeFiles/cyborg_unit_tests.dir/__/cyborg/reactor.cc.o\r\n[ 66%] Building CXX object tests/CMakeFiles/cyborg_unit_tests.dir/__/cyborg/reactor_tests.cc.o\r\n[ 73%] Linking CXX executable ../bin/cyborg_unit_tests\r\n../lib/libOrigenInterface.so: undefined reference to `Origen::TagManager::listInterpTags[abi:cxx11]() const'\r\n../lib/libOrigenInterface.so: undefined reference to `Origen::TagManager::getInterpTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >) const'\r\n../lib/libOrigenInterface.so: undefined reference to `Origen::collectLibraries(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)'\r\n../lib/libOrigenInterface.so: undefined reference to `Origen::TagManager::setInterpTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, double)'\r\n../lib/libOrigenInterface.so: undefined reference to `Origen::TagManager::setIdTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'\r\n../lib/libOrigenInterface.so: undefined reference to `Origen::convertStringToConcUnit(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'\r\n../lib/libOrigenInterface.so: undefined reference to `Origen::TagManager::listIdTags[abi:cxx11]() const'\r\n../lib/libOrigenInterface.so: undefined reference to `Origen::TagManager::to_string[abi:cxx11]() const'\r\n../lib/libOrigenInterface.so: undefined reference to `Origen::TagManager::deleteTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::ostream&)'\r\n../lib/libOrigenInterface.so: undefined reference to `Origen::TagManager::getIdTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >) const'\r\n../lib/libOrigenInterface.so: undefined reference to `ScaleUtils::IO::getResolvedPath(Standard::AbstractDataContainer&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)'\r\n../lib/libOrigenInterface.so: undefined reference to `Origen::TagManager::hasTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >) const'\r\n../lib/libOrigenInterface.so: undefined reference to `Origen::Material::Material(std::shared_ptr<Origen::Library>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, int, double)'\r\ncollect2: error: ld returned 1 exit status\r\ntests/CMakeFiles/cyborg_unit_tests.dir/build.make:197: recipe for target 'bin/cyborg_unit_tests' failed\r\nmake[2]: *** [bin/cyborg_unit_tests] Error 1\r\nCMakeFiles/Makefile2:1110: recipe for target 'tests/CMakeFiles/cyborg_unit_tests.dir/all' failed\r\nmake[1]: *** [tests/CMakeFiles/cyborg_unit_tests.dir/all] Error 2\r\nMakefile:138: recipe for target 'all' failed\r\nmake: *** [all] Error 2\r\nTraceback (most recent call last):\r\n  File \"install.py\", line 142, in <module>\r\n    main()\r\n  File \"install.py\", line 139, in main\r\n    install(args)\r\n  File \"install.py\", line 70, in install\r\n    shell=(os.name == 'nt'))\r\n  File \"/usr/lib/python3.5/subprocess.py\", line 581, in check_call\r\n    raise CalledProcessError(retcode, cmd)\r\nsubprocess.CalledProcessError: Command '['make']' returned non-zero exit status 2\r\n\r\n```"}}
{"actor":{"display_login":"jbae11"}}