{"action":"created","issue":{"url":"https://api.github.com/repos/vgteam/vg/issues/932","repository_url":"https://api.github.com/repos/vgteam/vg","labels_url":"https://api.github.com/repos/vgteam/vg/issues/932/labels{/name}","comments_url":"https://api.github.com/repos/vgteam/vg/issues/932/comments","events_url":"https://api.github.com/repos/vgteam/vg/issues/932/events","html_url":"https://github.com/vgteam/vg/pull/932","id":247430160,"number":932,"title":"Control graphs in Jenkins plots","user":{"login":"glennhickey","id":901102,"avatar_url":"https://avatars3.githubusercontent.com/u/901102?v=4","gravatar_id":"","url":"https://api.github.com/users/glennhickey","html_url":"https://github.com/glennhickey","followers_url":"https://api.github.com/users/glennhickey/followers","following_url":"https://api.github.com/users/glennhickey/following{/other_user}","gists_url":"https://api.github.com/users/glennhickey/gists{/gist_id}","starred_url":"https://api.github.com/users/glennhickey/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/glennhickey/subscriptions","organizations_url":"https://api.github.com/users/glennhickey/orgs","repos_url":"https://api.github.com/users/glennhickey/repos","events_url":"https://api.github.com/users/glennhickey/events{/privacy}","received_events_url":"https://api.github.com/users/glennhickey/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":6,"created_at":"2017-08-02T15:30:46Z","updated_at":"2017-08-04T00:51:40Z","closed_at":"2017-08-03T14:28:44Z","pull_request":{"url":"https://api.github.com/repos/vgteam/vg/pulls/932","html_url":"https://github.com/vgteam/vg/pull/932","diff_url":"https://github.com/vgteam/vg/pull/932.diff","patch_url":"https://github.com/vgteam/vg/pull/932.patch"},"body":"Adding these graphs to the simulation tests:\r\n* snp1kg_HG00096, which contains just the sample graph we're simulating from plus all reference positions, as a positive control\r\n* shifted1kg, our negative control from the bakeoff which is like 1kg but all variants are moved around\r\n\r\nA second set of plots is produced for these controls to not have too many lines in one plot.  Also doubled the simulation reads to 100000, but there's still work to be done to make these plots more meaningful.  \r\n"},"comment":{"url":"https://api.github.com/repos/vgteam/vg/issues/comments/320127466","html_url":"https://github.com/vgteam/vg/pull/932#issuecomment-320127466","issue_url":"https://api.github.com/repos/vgteam/vg/issues/932","id":320127466,"user":{"login":"ekg","id":145425,"avatar_url":"https://avatars1.githubusercontent.com/u/145425?v=4","gravatar_id":"","url":"https://api.github.com/users/ekg","html_url":"https://github.com/ekg","followers_url":"https://api.github.com/users/ekg/followers","following_url":"https://api.github.com/users/ekg/following{/other_user}","gists_url":"https://api.github.com/users/ekg/gists{/gist_id}","starred_url":"https://api.github.com/users/ekg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ekg/subscriptions","organizations_url":"https://api.github.com/users/ekg/orgs","repos_url":"https://api.github.com/users/ekg/repos","events_url":"https://api.github.com/users/ekg/events{/privacy}","received_events_url":"https://api.github.com/users/ekg/received_events","type":"User","site_admin":false},"created_at":"2017-08-04T00:51:40Z","updated_at":"2017-08-04T00:51:40Z","body":"I do find it strange that we are not killing the brca1 result with the positive control. This is a graph built from just the variants in hg0096 right? And the simulation is based on the haplotypes of hg0096?"}}
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