{"action":"created","comment":{"url":"https://api.github.com/repos/broadinstitute/picard/pulls/comments/98794798","pull_request_review_id":19448645,"id":98794798,"diff_hunk":"@@ -59,7 +59,7 @@\n      @Option(shortName = StandardOptionDefinitions.INPUT_SHORT_NAME, doc = \"Input VCF\")\n     public File INPUT;\n \n-    @Option(shortName = StandardOptionDefinitions.OUTPUT_SHORT_NAME, doc = \"Output VCF to be written.\")\n+    @Option(shortName = StandardOptionDefinitions.OUTPUT_SHORT_NAME, doc = \"Output VCF to be written to a file or stdout\")","path":"src/main/java/picard/vcf/UpdateVcfSequenceDictionary.java","position":5,"original_position":5,"commit_id":"bb3f99fa06270c5970ab8bed2082abb004c2cc31","original_commit_id":"bb3f99fa06270c5970ab8bed2082abb004c2cc31","user":{"login":"nh13","id":846274,"avatar_url":"https://avatars.githubusercontent.com/u/846274?v=3","gravatar_id":"","url":"https://api.github.com/users/nh13","html_url":"https://github.com/nh13","followers_url":"https://api.github.com/users/nh13/followers","following_url":"https://api.github.com/users/nh13/following{/other_user}","gists_url":"https://api.github.com/users/nh13/gists{/gist_id}","starred_url":"https://api.github.com/users/nh13/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nh13/subscriptions","organizations_url":"https://api.github.com/users/nh13/orgs","repos_url":"https://api.github.com/users/nh13/repos","events_url":"https://api.github.com/users/nh13/events{/privacy}","received_events_url":"https://api.github.com/users/nh13/received_events","type":"User","site_admin":false},"body":"Not needed.","created_at":"2017-01-31T23:12:00Z","updated_at":"2017-01-31T23:22:35Z","html_url":"https://github.com/broadinstitute/picard/pull/741#discussion_r98794798","pull_request_url":"https://api.github.com/repos/broadinstitute/picard/pulls/741","_links":{"self":{"href":"https://api.github.com/repos/broadinstitute/picard/pulls/comments/98794798"},"html":{"href":"https://github.com/broadinstitute/picard/pull/741#discussion_r98794798"},"pull_request":{"href":"https://api.github.com/repos/broadinstitute/picard/pulls/741"}}},"pull_request":{"url":"https://api.github.com/repos/broadinstitute/picard/pulls/741","id":104042326,"html_url":"https://github.com/broadinstitute/picard/pull/741","diff_url":"https://github.com/broadinstitute/picard/pull/741.diff","patch_url":"https://github.com/broadinstitute/picard/pull/741.patch","issue_url":"https://api.github.com/repos/broadinstitute/picard/issues/741","number":741,"state":"open","locked":false,"title":"UpdateVcfSequenceDictionary handles stdout","user":{"login":"ronlevine","id":8916428,"avatar_url":"https://avatars.githubusercontent.com/u/8916428?v=3","gravatar_id":"","url":"https://api.github.com/users/ronlevine","html_url":"https://github.com/ronlevine","followers_url":"https://api.github.com/users/ronlevine/followers","following_url":"https://api.github.com/users/ronlevine/following{/other_user}","gists_url":"https://api.github.com/users/ronlevine/gists{/gist_id}","starred_url":"https://api.github.com/users/ronlevine/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ronlevine/subscriptions","organizations_url":"https://api.github.com/users/ronlevine/orgs","repos_url":"https://api.github.com/users/ronlevine/repos","events_url":"https://api.github.com/users/ronlevine/events{/privacy}","received_events_url":"https://api.github.com/users/ronlevine/received_events","type":"User","site_admin":false},"body":"### Description\r\n\r\nImplements the handling of stdout in https://github.com/broadinstitute/picard/issues/507.\r\nIf `stdout` is the output file, set to write to a stream instead of a file.\r\n\r\n----\r\n\r\n### Checklist (never delete this)\r\n\r\nNever delete this, it is our record that procedure was followed. 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