{"action":"created","issue":{"url":"https://api.github.com/repos/linsalrob/fastq-pair/issues/2","repository_url":"https://api.github.com/repos/linsalrob/fastq-pair","labels_url":"https://api.github.com/repos/linsalrob/fastq-pair/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/linsalrob/fastq-pair/issues/2/comments","events_url":"https://api.github.com/repos/linsalrob/fastq-pair/issues/2/events","html_url":"https://github.com/linsalrob/fastq-pair/issues/2","id":262117110,"number":2,"title":"Pair mismatched when read name is close","user":{"login":"Fatmice","id":8956281,"avatar_url":"https://avatars0.githubusercontent.com/u/8956281?v=4","gravatar_id":"","url":"https://api.github.com/users/Fatmice","html_url":"https://github.com/Fatmice","followers_url":"https://api.github.com/users/Fatmice/followers","following_url":"https://api.github.com/users/Fatmice/following{/other_user}","gists_url":"https://api.github.com/users/Fatmice/gists{/gist_id}","starred_url":"https://api.github.com/users/Fatmice/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Fatmice/subscriptions","organizations_url":"https://api.github.com/users/Fatmice/orgs","repos_url":"https://api.github.com/users/Fatmice/repos","events_url":"https://api.github.com/users/Fatmice/events{/privacy}","received_events_url":"https://api.github.com/users/Fatmice/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2017-10-02T15:05:47Z","updated_at":"2017-10-04T07:29:02Z","closed_at":"2017-10-04T07:29:02Z","author_association":"NONE","body":"There is a read in R2 named \r\nNS500207:121:HTFVJAFXX:1:11111:13010:1958\r\nLater there is another named\r\nNS500207:121:HTFVJAFXX:1:11111:13010:19581\r\n\r\nR1 only has a read named\r\nNS500207:121:HTFVJAFXX:1:11111:13010:1958\r\n\r\nThis tool will mistakenly write into R1.paired.fq \r\nNS500207:121:HTFVJAFXX:1:11111:13010:1958\r\na second time thinking that such a pair existed.\r\n\r\nThis leads to mismatches in tools that require absolute name matching for read merging, such as usearch."},"comment":{"url":"https://api.github.com/repos/linsalrob/fastq-pair/issues/comments/334072028","html_url":"https://github.com/linsalrob/fastq-pair/issues/2#issuecomment-334072028","issue_url":"https://api.github.com/repos/linsalrob/fastq-pair/issues/2","id":334072028,"user":{"login":"linsalrob","id":836231,"avatar_url":"https://avatars2.githubusercontent.com/u/836231?v=4","gravatar_id":"","url":"https://api.github.com/users/linsalrob","html_url":"https://github.com/linsalrob","followers_url":"https://api.github.com/users/linsalrob/followers","following_url":"https://api.github.com/users/linsalrob/following{/other_user}","gists_url":"https://api.github.com/users/linsalrob/gists{/gist_id}","starred_url":"https://api.github.com/users/linsalrob/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/linsalrob/subscriptions","organizations_url":"https://api.github.com/users/linsalrob/orgs","repos_url":"https://api.github.com/users/linsalrob/repos","events_url":"https://api.github.com/users/linsalrob/events{/privacy}","received_events_url":"https://api.github.com/users/linsalrob/received_events","type":"User","site_admin":false},"created_at":"2017-10-04T07:29:02Z","updated_at":"2017-10-04T07:29:02Z","author_association":"OWNER","body":"I have corrected the way that R1/R2 are detected and that will solve this problem. I have also added a new test data set."}}
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