{"action":"created","issue":{"url":"https://api.github.com/repos/ehsanasgari/Deep-Proteomics/issues/2","repository_url":"https://api.github.com/repos/ehsanasgari/Deep-Proteomics","labels_url":"https://api.github.com/repos/ehsanasgari/Deep-Proteomics/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/ehsanasgari/Deep-Proteomics/issues/2/comments","events_url":"https://api.github.com/repos/ehsanasgari/Deep-Proteomics/issues/2/events","html_url":"https://github.com/ehsanasgari/Deep-Proteomics/issues/2","id":215106678,"number":2,"title":"Missing vectors","user":{"login":"peter-volkov","id":5512671,"avatar_url":"https://avatars2.githubusercontent.com/u/5512671?v=3","gravatar_id":"","url":"https://api.github.com/users/peter-volkov","html_url":"https://github.com/peter-volkov","followers_url":"https://api.github.com/users/peter-volkov/followers","following_url":"https://api.github.com/users/peter-volkov/following{/other_user}","gists_url":"https://api.github.com/users/peter-volkov/gists{/gist_id}","starred_url":"https://api.github.com/users/peter-volkov/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/peter-volkov/subscriptions","organizations_url":"https://api.github.com/users/peter-volkov/orgs","repos_url":"https://api.github.com/users/peter-volkov/repos","events_url":"https://api.github.com/users/peter-volkov/events{/privacy}","received_events_url":"https://api.github.com/users/peter-volkov/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2017-03-17T19:55:11Z","updated_at":"2017-06-05T14:13:07Z","closed_at":null,"body":"Why the vectors for 3grams:\r\n'HDU', 'USC', 'XLC', 'GUS', 'UKK', 'XNM', 'TGU', 'UAR', 'KBF', 'CUI', 'UGS', 'WXV', 'WCU', 'DUA', 'FXQ', 'SCU', 'XTC', 'URS', 'WRX', 'VWX', 'XGH', 'SSU', 'DKB'\r\nare missing? \r\nThey can be found in proteins from SwissProt collections, though not very frequent:\r\n{'WXV': 4, 'VWX': 4, 'HDU': 2, 'XLC': 2, 'UAR': 2, 'KBF': 2, 'DUA': 2, 'DKB': 2, 'USC': 1, 'GUS': 1, 'UKK': 1, 'XNM': 1, 'TGU': 1, 'CUI': 1, 'UGS': 1, 'WCU': 1, 'FXQ': 1, 'SCU': 1, 'XTC': 1, 'URS': 1, 'WRX': 1, 'XGH': 1, 'SSU': 1}\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/ehsanasgari/Deep-Proteomics/issues/comments/306197867","html_url":"https://github.com/ehsanasgari/Deep-Proteomics/issues/2#issuecomment-306197867","issue_url":"https://api.github.com/repos/ehsanasgari/Deep-Proteomics/issues/2","id":306197867,"user":{"login":"ehsanasgari","id":8551117,"avatar_url":"https://avatars1.githubusercontent.com/u/8551117?v=3","gravatar_id":"","url":"https://api.github.com/users/ehsanasgari","html_url":"https://github.com/ehsanasgari","followers_url":"https://api.github.com/users/ehsanasgari/followers","following_url":"https://api.github.com/users/ehsanasgari/following{/other_user}","gists_url":"https://api.github.com/users/ehsanasgari/gists{/gist_id}","starred_url":"https://api.github.com/users/ehsanasgari/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ehsanasgari/subscriptions","organizations_url":"https://api.github.com/users/ehsanasgari/orgs","repos_url":"https://api.github.com/users/ehsanasgari/repos","events_url":"https://api.github.com/users/ehsanasgari/events{/privacy}","received_events_url":"https://api.github.com/users/ehsanasgari/received_events","type":"User","site_admin":false},"created_at":"2017-06-05T14:13:07Z","updated_at":"2017-06-05T14:13:07Z","body":"As you figured it out, they are rare 3-grams which are considered as unkown in representation learning. We are going to publish a new version which covers those too. One approach would be considering the most similar 3-gram in terms of alignment score."}}
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