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Useful for adding new config params while preserving backwards compatibility; params from pipes/config.yaml get included implicitly, if not overridden by user's config file."},"comment":{"url":"https://api.github.com/repos/broadinstitute/viral-ngs/issues/comments/314559738","html_url":"https://github.com/broadinstitute/viral-ngs/pull/627#issuecomment-314559738","issue_url":"https://api.github.com/repos/broadinstitute/viral-ngs/issues/627","id":314559738,"user":{"login":"tomkinsc","id":53064,"avatar_url":"https://avatars0.githubusercontent.com/u/53064?v=3","gravatar_id":"","url":"https://api.github.com/users/tomkinsc","html_url":"https://github.com/tomkinsc","followers_url":"https://api.github.com/users/tomkinsc/followers","following_url":"https://api.github.com/users/tomkinsc/following{/other_user}","gists_url":"https://api.github.com/users/tomkinsc/gists{/gist_id}","starred_url":"https://api.github.com/users/tomkinsc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tomkinsc/subscriptions","organizations_url":"https://api.github.com/users/tomkinsc/orgs","repos_url":"https://api.github.com/users/tomkinsc/repos","events_url":"https://api.github.com/users/tomkinsc/events{/privacy}","received_events_url":"https://api.github.com/users/tomkinsc/received_events","type":"User","site_admin":false},"created_at":"2017-07-11T20:19:50Z","updated_at":"2017-07-11T20:19:50Z","body":"Yeah, that's reasonable. Let's make a GitHub issue though so we remember we can change the easy-deploy behavior to use an included yaml config rather than a copied yaml file (and that notes it would mean an update to the various shell scripts mentioned above)."}}
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