{"action":"created","issue":{"url":"https://api.github.com/repos/scifio/scifio/issues/317","repository_url":"https://api.github.com/repos/scifio/scifio","labels_url":"https://api.github.com/repos/scifio/scifio/issues/317/labels{/name}","comments_url":"https://api.github.com/repos/scifio/scifio/issues/317/comments","events_url":"https://api.github.com/repos/scifio/scifio/issues/317/events","html_url":"https://github.com/scifio/scifio/issues/317","id":165775318,"number":317,"title":"IndexOutOfBoundsException when reading IJ1 TIFF hyperstacks (>4GB)","user":{"login":"imagejan","id":2033938,"avatar_url":"https://avatars3.githubusercontent.com/u/2033938?v=3","gravatar_id":"","url":"https://api.github.com/users/imagejan","html_url":"https://github.com/imagejan","followers_url":"https://api.github.com/users/imagejan/followers","following_url":"https://api.github.com/users/imagejan/following{/other_user}","gists_url":"https://api.github.com/users/imagejan/gists{/gist_id}","starred_url":"https://api.github.com/users/imagejan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/imagejan/subscriptions","organizations_url":"https://api.github.com/users/imagejan/orgs","repos_url":"https://api.github.com/users/imagejan/repos","events_url":"https://api.github.com/users/imagejan/events{/privacy}","received_events_url":"https://api.github.com/users/imagejan/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2016-07-15T12:22:01Z","updated_at":"2017-03-15T19:15:22Z","closed_at":null,"body":"When using SCIFIO (in IJ2 or in KNIME) to read a large hyperstack that was saved using ImageJ/Fiji, I get the following exception:\n\n```\nException in thread \"DrawAndDrop\" java.lang.IndexOutOfBoundsException: Index: 1, Size: 1\n    at java.util.ArrayList.rangeCheck(ArrayList.java:653)\n    at java.util.ArrayList.get(ArrayList.java:429)\n    at io.scif.formats.MinimalTIFFFormat$Reader.openPlane(MinimalTIFFFormat.java:615)\n    at io.scif.formats.MinimalTIFFFormat$Reader.openPlane(MinimalTIFFFormat.java:537)\n    at io.scif.AbstractReader.openPlane(AbstractReader.java:167)\n    at io.scif.filters.ChannelFiller.openPlane(ChannelFiller.java:171)\n    at io.scif.filters.ChannelFiller.openPlane(ChannelFiller.java:151)\n    at io.scif.filters.PlaneSeparator.openPlane(PlaneSeparator.java:305)\n    at io.scif.filters.AbstractReaderFilter.openPlane(AbstractReaderFilter.java:244)\n    at io.scif.img.ImgOpener.read(ImgOpener.java:836)\n    at io.scif.img.ImgOpener.read(ImgOpener.java:818)\n    at io.scif.img.ImgOpener.read(ImgOpener.java:818)\n    at io.scif.img.ImgOpener.read(ImgOpener.java:798)\n    at io.scif.img.ImgOpener.readPlanes(ImgOpener.java:785)\n    at io.scif.img.ImgOpener.openImgs(ImgOpener.java:383)\n    at io.scif.img.ImgOpener.openImgs(ImgOpener.java:269)\n    at io.scif.img.ImgOpener.openImgs(ImgOpener.java:146)\n    at io.scif.services.DefaultDatasetIOService.open(DefaultDatasetIOService.java:124)\n    at io.scif.services.DefaultDatasetIOService.open(DefaultDatasetIOService.java:109)\n    at io.scif.io.DatasetIOPlugin.open(DatasetIOPlugin.java:75)\n    at io.scif.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)\n    at net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:135)\n    at net.imagej.legacy.DefaultLegacyHooks.interceptDragAndDropFile(DefaultLegacyHooks.java:363)\n    at ij.plugin.DragAndDrop.openFile(DragAndDrop.java)\n    at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)\n    at java.lang.Thread.run(Thread.java:745)\n```\n\nI didn't find this exception in the other open issues, so I'm not sure if this is related to any other known problem. If IJ1's flavour of large TIFF isn't supported (yet), at least a more informative error message should be shown to the user instead of just the stack trace.\n"},"comment":{"url":"https://api.github.com/repos/scifio/scifio/issues/comments/286849773","html_url":"https://github.com/scifio/scifio/issues/317#issuecomment-286849773","issue_url":"https://api.github.com/repos/scifio/scifio/issues/317","id":286849773,"user":{"login":"ctrueden","id":556626,"avatar_url":"https://avatars1.githubusercontent.com/u/556626?v=3","gravatar_id":"","url":"https://api.github.com/users/ctrueden","html_url":"https://github.com/ctrueden","followers_url":"https://api.github.com/users/ctrueden/followers","following_url":"https://api.github.com/users/ctrueden/following{/other_user}","gists_url":"https://api.github.com/users/ctrueden/gists{/gist_id}","starred_url":"https://api.github.com/users/ctrueden/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ctrueden/subscriptions","organizations_url":"https://api.github.com/users/ctrueden/orgs","repos_url":"https://api.github.com/users/ctrueden/repos","events_url":"https://api.github.com/users/ctrueden/events{/privacy}","received_events_url":"https://api.github.com/users/ctrueden/received_events","type":"User","site_admin":false},"created_at":"2017-03-15T19:15:22Z","updated_at":"2017-03-15T19:15:22Z","body":"> what is the easy way to do this through the IJ GUI?\r\n\r\nDo what? Export BigTIFF? Or successfully import >4GB TIFF files written by ImageJ 1.x?"}}
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