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Description\r\n<!--- \r\nIs there something you want to do? Is this a bug? Feature request? Discussion? \r\n  * Question: ask away!\r\n  * New feature / analysis : \r\n  * Bug: what were you trying to do? What did you expect to happen? What happened? \r\n-->\r\nRemoval of soil component and compensation or correction for shadow effects need to be incorporated in hyperspectral calibration. These effects may affect our plot level summaries. Shadow may not necessarily noise. It is possible that leaves under the shadow of another plant so it shows a 'plant-like' spectra. It is possible to compensate for shadow rather than removal. \r\n<!--- \r\n### Details\r\nHow would this change help? (you, the project, the user community? \r\nHow would it be used? \r\n      Are there any examples (existing software / utilities)? Please provide links, screenshots, etc-->\r\n\r\n### Completion Criteria   \r\n\r\n<!--- How will we know when this is done?\r\nplease use boxes like\r\nfor a bug:\r\n* [ ] Now I can [topic of question / bug]\r\nfor a discussion:\r\n* [ ] Discuss and develop requirements docs; create issues for next steps\r\nfor a new feature\r\n* [ ] create algorithm\r\n* [ ] write test\r\n* [ ] add to pipeline\r\n--->\r\n* [ ] Discuss and develop requirements docs; create issues for next steps\r\nfor a new feature\r\n* [ ] create algorithm\r\n* [ ] write test\r\n* [ ] add to pipeline"},"comment":{"url":"https://api.github.com/repos/terraref/reference-data/issues/comments/302446958","html_url":"https://github.com/terraref/reference-data/issues/96#issuecomment-302446958","issue_url":"https://api.github.com/repos/terraref/reference-data/issues/96","id":302446958,"user":{"login":"dlebauer","id":464871,"avatar_url":"https://avatars1.githubusercontent.com/u/464871?v=3","gravatar_id":"","url":"https://api.github.com/users/dlebauer","html_url":"https://github.com/dlebauer","followers_url":"https://api.github.com/users/dlebauer/followers","following_url":"https://api.github.com/users/dlebauer/following{/other_user}","gists_url":"https://api.github.com/users/dlebauer/gists{/gist_id}","starred_url":"https://api.github.com/users/dlebauer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dlebauer/subscriptions","organizations_url":"https://api.github.com/users/dlebauer/orgs","repos_url":"https://api.github.com/users/dlebauer/repos","events_url":"https://api.github.com/users/dlebauer/events{/privacy}","received_events_url":"https://api.github.com/users/dlebauer/received_events","type":"User","site_admin":false},"created_at":"2017-05-18T15:50:51Z","updated_at":"2017-05-18T15:50:51Z","body":"@Paheding Can you point to an example of the output generated by the extractor on ROGER? \r\n\r\nDid you write tests for the extractor?"}}
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