{"action":"opened","issue":{"url":"https://api.github.com/repos/I2PC/scipion/issues/837","repository_url":"https://api.github.com/repos/I2PC/scipion","labels_url":"https://api.github.com/repos/I2PC/scipion/issues/837/labels{/name}","comments_url":"https://api.github.com/repos/I2PC/scipion/issues/837/comments","events_url":"https://api.github.com/repos/I2PC/scipion/issues/837/events","html_url":"https://github.com/I2PC/scipion/issues/837","id":209157672,"number":837,"title":"Generate averages and std from images, fails for some cases","user":{"login":"josuegbl","id":12274357,"avatar_url":"https://avatars.githubusercontent.com/u/12274357?v=3","gravatar_id":"","url":"https://api.github.com/users/josuegbl","html_url":"https://github.com/josuegbl","followers_url":"https://api.github.com/users/josuegbl/followers","following_url":"https://api.github.com/users/josuegbl/following{/other_user}","gists_url":"https://api.github.com/users/josuegbl/gists{/gist_id}","starred_url":"https://api.github.com/users/josuegbl/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/josuegbl/subscriptions","organizations_url":"https://api.github.com/users/josuegbl/orgs","repos_url":"https://api.github.com/users/josuegbl/repos","events_url":"https://api.github.com/users/josuegbl/events{/privacy}","received_events_url":"https://api.github.com/users/josuegbl/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"pconesa","id":785633,"avatar_url":"https://avatars.githubusercontent.com/u/785633?v=3","gravatar_id":"","url":"https://api.github.com/users/pconesa","html_url":"https://github.com/pconesa","followers_url":"https://api.github.com/users/pconesa/followers","following_url":"https://api.github.com/users/pconesa/following{/other_user}","gists_url":"https://api.github.com/users/pconesa/gists{/gist_id}","starred_url":"https://api.github.com/users/pconesa/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pconesa/subscriptions","organizations_url":"https://api.github.com/users/pconesa/orgs","repos_url":"https://api.github.com/users/pconesa/repos","events_url":"https://api.github.com/users/pconesa/events{/privacy}","received_events_url":"https://api.github.com/users/pconesa/received_events","type":"User","site_admin":false},"assignees":[{"login":"pconesa","id":785633,"avatar_url":"https://avatars.githubusercontent.com/u/785633?v=3","gravatar_id":"","url":"https://api.github.com/users/pconesa","html_url":"https://github.com/pconesa","followers_url":"https://api.github.com/users/pconesa/followers","following_url":"https://api.github.com/users/pconesa/following{/other_user}","gists_url":"https://api.github.com/users/pconesa/gists{/gist_id}","starred_url":"https://api.github.com/users/pconesa/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pconesa/subscriptions","organizations_url":"https://api.github.com/users/pconesa/orgs","repos_url":"https://api.github.com/users/pconesa/repos","events_url":"https://api.github.com/users/pconesa/events{/privacy}","received_events_url":"https://api.github.com/users/pconesa/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2017-02-21T14:16:17Z","updated_at":"2017-02-21T14:16:17Z","closed_at":null,"body":"In some cases, when generate averages and std from images, java crash with the following error:\r\n# A fatal error has been detected by the Java Runtime Environment:\r\n#\r\n#  SIGSEGV (0xb) at pc=0x00007f1f2ab4b0be, pid=3528, tid=0x00007f1f1bfff700\r\n#\r\n# JRE version: OpenJDK Runtime Environment (8.0_111-b14) (build 1.8.0_111-b14)\r\n# Java VM: OpenJDK 64-Bit Server VM (25.111-b14 mixed mode linux-amd64 compressed oops)\r\n# Derivative: IcedTea 3.2.0\r\n# Distribution: Custom build (Wed Nov 23 13:15:13 UTC 2016)\r\n# Problematic frame:\r\n# C  [libXmippData.so+0x47f0be]  MDL::isTextFile(MDLabel)+0x18\r\n#\r\n# Failed to write core dump. Core dumps have been disabled. To enable core dumping, try \"ulimit -c unlimited\" before starting Java again\r\n#\r\n# An error report file with more information is saved as:\r\n# /disco4/RNP_WSN_CAMBRIDGE/RNP_WSN_SCIPION/hs_err_pid3528.log\r\n#\r\n# If you would like to submit a bug report, please include\r\n# instructions on how to reproduce the bug and visit:\r\n#   http://icedtea.classpath.org/bugzilla\r\n# The crash happened outside the Java Virtual Machine in native code.\r\n# See problematic frame for where to report the bug.\r\n"}}
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