{"action":"created","issue":{"url":"https://api.github.com/repos/lbologna/bsp_data_repository/issues/19","repository_url":"https://api.github.com/repos/lbologna/bsp_data_repository","labels_url":"https://api.github.com/repos/lbologna/bsp_data_repository/issues/19/labels{/name}","comments_url":"https://api.github.com/repos/lbologna/bsp_data_repository/issues/19/comments","events_url":"https://api.github.com/repos/lbologna/bsp_data_repository/issues/19/events","html_url":"https://github.com/lbologna/bsp_data_repository/issues/19","id":227303548,"number":19,"title":"Morphology with tiny soma","user":{"login":"wvangeit","id":3098670,"avatar_url":"https://avatars1.githubusercontent.com/u/3098670?v=3","gravatar_id":"","url":"https://api.github.com/users/wvangeit","html_url":"https://github.com/wvangeit","followers_url":"https://api.github.com/users/wvangeit/followers","following_url":"https://api.github.com/users/wvangeit/following{/other_user}","gists_url":"https://api.github.com/users/wvangeit/gists{/gist_id}","starred_url":"https://api.github.com/users/wvangeit/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wvangeit/subscriptions","organizations_url":"https://api.github.com/users/wvangeit/orgs","repos_url":"https://api.github.com/users/wvangeit/repos","events_url":"https://api.github.com/users/wvangeit/events{/privacy}","received_events_url":"https://api.github.com/users/wvangeit/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2017-05-09T09:27:38Z","updated_at":"2017-05-09T11:27:25Z","closed_at":null,"body":"The developer of Neuron as a Service has by accident noticed something strange.\r\nJust want to mention it here so it can be fixed at some point.\r\n\r\nThe morphology of \r\nhttps://github.com/lbologna/bsp_data_repository/tree/master/optimizations/CA1_pyr_cACpyr_dend-990803_axon-051208AM2_20170209114312\r\nhas a tiny soma.\r\n\r\nAs you can see here, the soma is the black cylinder, and it's very small compared to the dendrites\r\n![screen shot 2017-05-09 at 10 35 14](https://cloud.githubusercontent.com/assets/3098670/25842764/77cd0f2a-34a5-11e7-9f1b-94d660fbe245.png)\r\n\r\nOr in a screenshot of the dendrogram:\r\n![dendrogram_720](https://cloud.githubusercontent.com/assets/3098670/25842962/15659932-34a6-11e7-8fc4-735d91c06333.png)\r\n\r\n\r\nIt can be seen interactively here:\r\nhttps://blue-naas.humanbrainproject.eu/#/model/CA1_pyr_cACpyr_dend-990803_axon-051208AM2_20170209114312\r\n\r\nIt's caused by this contour of the soma in ASC file (seems to be circle with radius < 1 micron):\r\n\r\n;File generated by the MUK Write-ASC program.\r\n(\"CellBody\"\r\n  (Color Red)\r\n  (CellBody)\r\n  (0.370999 -0.737997 0 0)  ; 1, 1\r\n  (0.731 -0.228003 0 0)  ; 1, 2\r\n  (0.650998 0.101999 0 0)  ; 1, 3\r\n  (0.501004 0.442003 0 0)  ; 1, 4\r\n  (0.290997 0.572 0 0)  ; 1, 5\r\n  (-0.269 0.601999 0 0)  ; 1, 6\r\n  (-0.438998 0.332002 0 0)  ; 1, 7\r\n  (-0.608997 -0.0780014 0 0)  ; 1, 8\r\n  (-0.718997 -0.118002 0 0)  ; 1, 9\r\n  (-0.509006 -0.887999 0 0)  ; 1, 10\r\n);"},"comment":{"url":"https://api.github.com/repos/lbologna/bsp_data_repository/issues/comments/300135557","html_url":"https://github.com/lbologna/bsp_data_repository/issues/19#issuecomment-300135557","issue_url":"https://api.github.com/repos/lbologna/bsp_data_repository/issues/19","id":300135557,"user":{"login":"wvangeit","id":3098670,"avatar_url":"https://avatars1.githubusercontent.com/u/3098670?v=3","gravatar_id":"","url":"https://api.github.com/users/wvangeit","html_url":"https://github.com/wvangeit","followers_url":"https://api.github.com/users/wvangeit/followers","following_url":"https://api.github.com/users/wvangeit/following{/other_user}","gists_url":"https://api.github.com/users/wvangeit/gists{/gist_id}","starred_url":"https://api.github.com/users/wvangeit/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wvangeit/subscriptions","organizations_url":"https://api.github.com/users/wvangeit/orgs","repos_url":"https://api.github.com/users/wvangeit/repos","events_url":"https://api.github.com/users/wvangeit/events{/privacy}","received_events_url":"https://api.github.com/users/wvangeit/received_events","type":"User","site_admin":false},"created_at":"2017-05-09T11:27:25Z","updated_at":"2017-05-09T11:27:25Z","body":"(there are also some trifurcations in this morphology, for the emodels this should be no problem I think, but I don't know if all the circuit building/analysis tools can handle this)"}}
{"actor":{"display_login":"wvangeit"}}