{"action":"created","issue":{"url":"https://api.github.com/repos/MikeAxtell/ShortStack/issues/62","repository_url":"https://api.github.com/repos/MikeAxtell/ShortStack","labels_url":"https://api.github.com/repos/MikeAxtell/ShortStack/issues/62/labels{/name}","comments_url":"https://api.github.com/repos/MikeAxtell/ShortStack/issues/62/comments","events_url":"https://api.github.com/repos/MikeAxtell/ShortStack/issues/62/events","html_url":"https://github.com/MikeAxtell/ShortStack/issues/62","id":245470765,"number":62,"title":"Locating bowtie indexes","user":{"login":"c-guzman","id":15654850,"avatar_url":"https://avatars3.githubusercontent.com/u/15654850?v=4","gravatar_id":"","url":"https://api.github.com/users/c-guzman","html_url":"https://github.com/c-guzman","followers_url":"https://api.github.com/users/c-guzman/followers","following_url":"https://api.github.com/users/c-guzman/following{/other_user}","gists_url":"https://api.github.com/users/c-guzman/gists{/gist_id}","starred_url":"https://api.github.com/users/c-guzman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/c-guzman/subscriptions","organizations_url":"https://api.github.com/users/c-guzman/orgs","repos_url":"https://api.github.com/users/c-guzman/repos","events_url":"https://api.github.com/users/c-guzman/events{/privacy}","received_events_url":"https://api.github.com/users/c-guzman/received_events","type":"User","site_admin":false},"labels":[{"id":87482005,"url":"https://api.github.com/repos/MikeAxtell/ShortStack/labels/question","name":"question","color":"cc317c","default":true}],"state":"open","locked":false,"assignee":{"login":"MikeAxtell","id":6854537,"avatar_url":"https://avatars0.githubusercontent.com/u/6854537?v=4","gravatar_id":"","url":"https://api.github.com/users/MikeAxtell","html_url":"https://github.com/MikeAxtell","followers_url":"https://api.github.com/users/MikeAxtell/followers","following_url":"https://api.github.com/users/MikeAxtell/following{/other_user}","gists_url":"https://api.github.com/users/MikeAxtell/gists{/gist_id}","starred_url":"https://api.github.com/users/MikeAxtell/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MikeAxtell/subscriptions","organizations_url":"https://api.github.com/users/MikeAxtell/orgs","repos_url":"https://api.github.com/users/MikeAxtell/repos","events_url":"https://api.github.com/users/MikeAxtell/events{/privacy}","received_events_url":"https://api.github.com/users/MikeAxtell/received_events","type":"User","site_admin":false},"assignees":[{"login":"MikeAxtell","id":6854537,"avatar_url":"https://avatars0.githubusercontent.com/u/6854537?v=4","gravatar_id":"","url":"https://api.github.com/users/MikeAxtell","html_url":"https://github.com/MikeAxtell","followers_url":"https://api.github.com/users/MikeAxtell/followers","following_url":"https://api.github.com/users/MikeAxtell/following{/other_user}","gists_url":"https://api.github.com/users/MikeAxtell/gists{/gist_id}","starred_url":"https://api.github.com/users/MikeAxtell/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MikeAxtell/subscriptions","organizations_url":"https://api.github.com/users/MikeAxtell/orgs","repos_url":"https://api.github.com/users/MikeAxtell/repos","events_url":"https://api.github.com/users/MikeAxtell/events{/privacy}","received_events_url":"https://api.github.com/users/MikeAxtell/received_events","type":"User","site_admin":false}],"milestone":null,"comments":4,"created_at":"2017-07-25T17:08:44Z","updated_at":"2017-07-25T18:54:06Z","closed_at":null,"body":"I can't find any documentation regarding where ShortStack looks for bowtie indexes. Could you please add this to the documentation and also let me know? Perhaps adding a parameter to allow the input of the directory would be great!\r\n\r\nThanks!"},"comment":{"url":"https://api.github.com/repos/MikeAxtell/ShortStack/issues/comments/317836447","html_url":"https://github.com/MikeAxtell/ShortStack/issues/62#issuecomment-317836447","issue_url":"https://api.github.com/repos/MikeAxtell/ShortStack/issues/62","id":317836447,"user":{"login":"MikeAxtell","id":6854537,"avatar_url":"https://avatars0.githubusercontent.com/u/6854537?v=4","gravatar_id":"","url":"https://api.github.com/users/MikeAxtell","html_url":"https://github.com/MikeAxtell","followers_url":"https://api.github.com/users/MikeAxtell/followers","following_url":"https://api.github.com/users/MikeAxtell/following{/other_user}","gists_url":"https://api.github.com/users/MikeAxtell/gists{/gist_id}","starred_url":"https://api.github.com/users/MikeAxtell/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MikeAxtell/subscriptions","organizations_url":"https://api.github.com/users/MikeAxtell/orgs","repos_url":"https://api.github.com/users/MikeAxtell/repos","events_url":"https://api.github.com/users/MikeAxtell/events{/privacy}","received_events_url":"https://api.github.com/users/MikeAxtell/received_events","type":"User","site_admin":false},"created_at":"2017-07-25T18:54:06Z","updated_at":"2017-07-25T18:54:06Z","body":"I get it now I think, thanks. Do you want to send me an example Nextflow script so I can reproduce the use case here?"}}
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