{"action":"created","issue":{"url":"https://api.github.com/repos/dib-lab/sourmash/issues/104","repository_url":"https://api.github.com/repos/dib-lab/sourmash","labels_url":"https://api.github.com/repos/dib-lab/sourmash/issues/104/labels{/name}","comments_url":"https://api.github.com/repos/dib-lab/sourmash/issues/104/comments","events_url":"https://api.github.com/repos/dib-lab/sourmash/issues/104/events","html_url":"https://github.com/dib-lab/sourmash/issues/104","id":200394265,"number":104,"title":"Performance ponies","user":{"login":"betatim","id":1448859,"avatar_url":"https://avatars.githubusercontent.com/u/1448859?v=3","gravatar_id":"","url":"https://api.github.com/users/betatim","html_url":"https://github.com/betatim","followers_url":"https://api.github.com/users/betatim/followers","following_url":"https://api.github.com/users/betatim/following{/other_user}","gists_url":"https://api.github.com/users/betatim/gists{/gist_id}","starred_url":"https://api.github.com/users/betatim/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/betatim/subscriptions","organizations_url":"https://api.github.com/users/betatim/orgs","repos_url":"https://api.github.com/users/betatim/repos","events_url":"https://api.github.com/users/betatim/events{/privacy}","received_events_url":"https://api.github.com/users/betatim/received_events","type":"User","site_admin":false},"labels":[{"id":526699924,"url":"https://api.github.com/repos/dib-lab/sourmash/labels/asv","name":"asv","color":"c5def5","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":16,"created_at":"2017-01-12T15:19:43Z","updated_at":"2017-01-30T14:28:19Z","closed_at":null,"body":"Branching off of #103, a place to discuss ideas, what worked and what didn't work regarding making `sourmash` fast again.\r\n\r\n@lgautier's \"python all the way notebook\": https://github.com/lgautier/mashing-pumpkins/blob/master/doc/notebooks/MinHash%2C%20design%20and%20performance.ipynb\r\n\r\nPython function calls are notoriously slow, so we should see improvement by calling `hashfun` less often (in batches). Do you think that murmur hash also gains on top of that by computing things in a batch?"},"comment":{"url":"https://api.github.com/repos/dib-lab/sourmash/issues/comments/276075670","html_url":"https://github.com/dib-lab/sourmash/issues/104#issuecomment-276075670","issue_url":"https://api.github.com/repos/dib-lab/sourmash/issues/104","id":276075670,"user":{"login":"ctb","id":51016,"avatar_url":"https://avatars.githubusercontent.com/u/51016?v=3","gravatar_id":"","url":"https://api.github.com/users/ctb","html_url":"https://github.com/ctb","followers_url":"https://api.github.com/users/ctb/followers","following_url":"https://api.github.com/users/ctb/following{/other_user}","gists_url":"https://api.github.com/users/ctb/gists{/gist_id}","starred_url":"https://api.github.com/users/ctb/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ctb/subscriptions","organizations_url":"https://api.github.com/users/ctb/orgs","repos_url":"https://api.github.com/users/ctb/repos","events_url":"https://api.github.com/users/ctb/events{/privacy}","received_events_url":"https://api.github.com/users/ctb/received_events","type":"User","site_admin":false},"created_at":"2017-01-30T14:28:19Z","updated_at":"2017-01-30T14:28:19Z","body":"It's true!\n\nA few notes about screed:\n\n* supports streaming I/O\n* supports autodetection of FASTA, FASTQ, gz, and bz2 formats, in streaming\n  mode as well\n"}}
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