{"action":"created","issue":{"url":"https://api.github.com/repos/PoonLab/Kaphi/issues/124","repository_url":"https://api.github.com/repos/PoonLab/Kaphi","labels_url":"https://api.github.com/repos/PoonLab/Kaphi/issues/124/labels{/name}","comments_url":"https://api.github.com/repos/PoonLab/Kaphi/issues/124/comments","events_url":"https://api.github.com/repos/PoonLab/Kaphi/issues/124/events","html_url":"https://github.com/PoonLab/Kaphi/issues/124","id":272279556,"number":124,"title":"Hard code in max number of iterations for SMC run?","user":{"login":"gtng92","id":26124574,"avatar_url":"https://avatars1.githubusercontent.com/u/26124574?v=4","gravatar_id":"","url":"https://api.github.com/users/gtng92","html_url":"https://github.com/gtng92","followers_url":"https://api.github.com/users/gtng92/followers","following_url":"https://api.github.com/users/gtng92/following{/other_user}","gists_url":"https://api.github.com/users/gtng92/gists{/gist_id}","starred_url":"https://api.github.com/users/gtng92/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gtng92/subscriptions","organizations_url":"https://api.github.com/users/gtng92/orgs","repos_url":"https://api.github.com/users/gtng92/repos","events_url":"https://api.github.com/users/gtng92/events{/privacy}","received_events_url":"https://api.github.com/users/gtng92/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":{"url":"https://api.github.com/repos/PoonLab/Kaphi/milestones/12","html_url":"https://github.com/PoonLab/Kaphi/milestone/12","labels_url":"https://api.github.com/repos/PoonLab/Kaphi/milestones/12/labels","id":2790298,"number":12,"title":"version 0.2","description":"* Previous version should be considered 0.1, not 1.0\r\n* Purpose is bug fixes and completing the standard models (speciation, epidemic)","creator":{"login":"ArtPoon","id":1109328,"avatar_url":"https://avatars1.githubusercontent.com/u/1109328?v=4","gravatar_id":"","url":"https://api.github.com/users/ArtPoon","html_url":"https://github.com/ArtPoon","followers_url":"https://api.github.com/users/ArtPoon/followers","following_url":"https://api.github.com/users/ArtPoon/following{/other_user}","gists_url":"https://api.github.com/users/ArtPoon/gists{/gist_id}","starred_url":"https://api.github.com/users/ArtPoon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ArtPoon/subscriptions","organizations_url":"https://api.github.com/users/ArtPoon/orgs","repos_url":"https://api.github.com/users/ArtPoon/repos","events_url":"https://api.github.com/users/ArtPoon/events{/privacy}","received_events_url":"https://api.github.com/users/ArtPoon/received_events","type":"User","site_admin":false},"open_issues":3,"closed_issues":6,"state":"open","created_at":"2017-09-25T17:12:50Z","updated_at":"2017-11-27T16:22:16Z","due_on":null,"closed_at":null},"comments":1,"created_at":"2017-11-08T17:16:55Z","updated_at":"2017-11-27T19:15:39Z","closed_at":null,"author_association":"CONTRIBUTOR","body":"Two runs \"completed\" in issue #123 had to be manually stopped.\r\n[example-compartmental.beta.gamma.mu.pdf](https://github.com/PoonLab/Kaphi/files/1454771/example-compartmental.beta.gamma.mu.pdf)\r\n[example-compartmental.RF.dist.iter361.pdf](https://github.com/PoonLab/Kaphi/files/1454772/example-compartmental.RF.dist.iter361.pdf)\r\n\r\nAfter saving the TSV files and creating the PDFs of the results before stopping the run, it was clear that the runs had the potential to run infinitely. Some of the parameter estimates would flatline at a value for over 100 iterations, or vary within a param value range of 0.5."},"comment":{"url":"https://api.github.com/repos/PoonLab/Kaphi/issues/comments/347293788","html_url":"https://github.com/PoonLab/Kaphi/issues/124#issuecomment-347293788","issue_url":"https://api.github.com/repos/PoonLab/Kaphi/issues/124","id":347293788,"user":{"login":"ArtPoon","id":1109328,"avatar_url":"https://avatars1.githubusercontent.com/u/1109328?v=4","gravatar_id":"","url":"https://api.github.com/users/ArtPoon","html_url":"https://github.com/ArtPoon","followers_url":"https://api.github.com/users/ArtPoon/followers","following_url":"https://api.github.com/users/ArtPoon/following{/other_user}","gists_url":"https://api.github.com/users/ArtPoon/gists{/gist_id}","starred_url":"https://api.github.com/users/ArtPoon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ArtPoon/subscriptions","organizations_url":"https://api.github.com/users/ArtPoon/orgs","repos_url":"https://api.github.com/users/ArtPoon/repos","events_url":"https://api.github.com/users/ArtPoon/events{/privacy}","received_events_url":"https://api.github.com/users/ArtPoon/received_events","type":"User","site_admin":false},"created_at":"2017-11-27T19:15:39Z","updated_at":"2017-11-27T19:15:39Z","author_association":"CONTRIBUTOR","body":"Use last 10 runs with acceptance rate of 0 as a stopping criterion (failure), notify user that the prior distributions may be misconfigured."}}
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