{"action":"closed","issue":{"url":"https://api.github.com/repos/seqan/seqan/issues/2137","repository_url":"https://api.github.com/repos/seqan/seqan","labels_url":"https://api.github.com/repos/seqan/seqan/issues/2137/labels{/name}","comments_url":"https://api.github.com/repos/seqan/seqan/issues/2137/comments","events_url":"https://api.github.com/repos/seqan/seqan/issues/2137/events","html_url":"https://github.com/seqan/seqan/issues/2137","id":265499158,"number":2137,"title":"2.3.2 test errors on sparc64","user":{"login":"mr-c","id":1330696,"avatar_url":"https://avatars3.githubusercontent.com/u/1330696?v=4","gravatar_id":"","url":"https://api.github.com/users/mr-c","html_url":"https://github.com/mr-c","followers_url":"https://api.github.com/users/mr-c/followers","following_url":"https://api.github.com/users/mr-c/following{/other_user}","gists_url":"https://api.github.com/users/mr-c/gists{/gist_id}","starred_url":"https://api.github.com/users/mr-c/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mr-c/subscriptions","organizations_url":"https://api.github.com/users/mr-c/orgs","repos_url":"https://api.github.com/users/mr-c/repos","events_url":"https://api.github.com/users/mr-c/events{/privacy}","received_events_url":"https://api.github.com/users/mr-c/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2017-10-14T15:28:22Z","updated_at":"2017-10-27T13:31:52Z","closed_at":"2017-10-27T13:31:52Z","author_association":"CONTRIBUTOR","body":"Built on `sparc64` for `sparc64`\r\n\r\nThis build does have `-DCMAKE_CXX_FLAGS=\"-DSEQAN_ASYNC_IO=0\"` as requested by @h-2 \r\n\r\n[Full log](https://buildd.debian.org/status/fetch.php?pkg=seqan2&arch=sparc64&ver=2.3.2%2Bdfsg2-2&stamp=1507990894&raw=0)\r\n\r\n- [ ] test_test_bam_io (SEGFAULT) (but no error message?)\r\n- [x] test_test_basic_alphabet (Failed)\r\n```\r\n/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/tests/basic/test_basic_alphabet_adapt_builtins.h:287 Assertion failed : +ValueSize<long>::VALUE == 4294967296ull was: 0 != 4294967296\r\n\r\nstack trace:\r\n  0     [0x1000001e004]  seqan::ClassTest::fail() + 0x30\r\n  1     [0x10000022a8c]  void SEQAN_TEST_test_basic_alphabet_adapt_builtins_concepts_long<true>() + 0x6d8\r\n  2     [0x1000001581c]  main + 0x1a4\r\n  3[0xfff8000100c45c30]  __libc_start_main + 0x110\r\n\r\ntest_basic_alphabet_adapt_builtins_concepts_long FAILED\r\n```\r\n- [ ] test_test_index_creation (SEGFAULT) (but no error message?)\r\n- [ ] test_test_index_crosscompare_char (SEGFAULT) (but no error message?)\r\n- [ ] test_test_index_crosscompare_dna (SEGFAULT) (but no error message?)\r\n- [ ] test_test_index_fm_rank_dictionary (SEGFAULT) (but no error message?)\r\n- [ ] test_test_index_base (SEGFAULT) (but no error message?)\r\n- [ ] test_test_index_fm (SEGFAULT) (but no error message?)\r\n- [ ] test_test_index_bifm (SEGFAULT) (but no error message?)\r\n- [ ] test_test_index_vstree (SEGFAULT) (but no error message?)\r\n- [ ] test_test_index_stree_iterators (SEGFAULT) (but no error message?)\r\n- [ ] test_test_index_finder (SEGFAULT) (but no error message?)\r\n- [ ] test_reduced_aminoacid (SEGFAULT) (but no error message?)\r\n- [ ] test_test_seq_io (SEGFAULT)\r\n```\r\nUnexpected exception of type std::ios_base::failure[abi:cxx11]; message: Invalid BGZF block header.: iostream error\r\ntest_seq_io_bam_file_bam_read_sequences FAILED\r\nUnexpected exception of type std::ios_base::failure[abi:cxx11]; message: Invalid BGZF block header.: iostream error\r\ntest_seq_io_bam_file_bam_read_sequences_and_qualities FAILED\r\n```\r\n- [ ] test_test_store (SEGFAULT) (but no error message?)\r\n- [ ] test_test_stream (SEGFAULT)\r\n```\r\n/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/include/seqan/file/file_mapping.h:700 FAILED!  (mapFileSegment(4096,4096,3) failed (filesize=5000000): \"Invalid argument\")\r\n\r\nstack trace:\r\n  0     [0x1000010f7b8]  seqan::ClassTest::fail() + 0x30\r\n  1     [0x1000019e55c]  void* seqan::mapFileSegment<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long>, long, long, seqan::FileMappingMode>(seqan::FileMapping<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >&, long, long, seqan::FileMappingMode) + 0x2c0\r\n  2     [0x1000019a9e0]  void* seqan::mapFileSegment<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long>, long, long>(seqan::FileMapping<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >&, long, long) + 0x28\r\n  3     [0x10000195b18]  bool seqan::_readFilePage<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >, seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long>, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > > >(seqan::FilePageTable<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&, seqan::FileMapping<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >&, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&) + 0x110\r\n  4     [0x10000194e08]  bool seqan::_processFilePage<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >, seqan::True>(seqan::FilePageTable<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&, seqan::True const&) + 0xa0\r\n  5     [0x100001bcbd8]  seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >& seqan::fetchFilePage<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >, long, unsigned int>(seqan::FilePageTable<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&, long, unsigned int, bool) + 0x110\r\n  6     [0x100001bbb1c]  seqan::FileStreamBuffer<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >::_nextReadPage() + 0x138\r\n  7     [0x100001b7898]  seqan::FileStreamBuffer<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >::underflow() + 0x9c\r\n  8[0xfff80001006a83bc]  std::basic_streambuf<char, std::char_traits<char> >::xsgetn(char*, long) + 0x90\r\n  9[0xfff8000100680068]  std::istream::read(char*, long) + 0x54\r\n 10     [0x10000159004]  FileStreamTest__ReadLarge<seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >::runTest() + 0x278\r\n 11     [0x1000010ff44]  seqan::TestSystem::runAll() + 0x230\r\n 12     [0x1000010ce18]  main + 0x30\r\n 13[0xfff8000100c45c30]  __libc_start_main + 0x110\r\n\r\nFileStreamTest_ReadLarge type parameter seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > FAILED\r\nFileStreamTest_WriteLarge type parameter seqan::Sync<void> OK\r\n/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/include/seqan/file/file_mapping.h:700 FAILED!  (mapFileSegment(4096,4096,3) failed (filesize=8192): \"Invalid argument\")\r\n\r\nstack trace:\r\n  0     [0x1000010f7b8]  seqan::ClassTest::fail() + 0x30\r\n  1     [0x1000019e55c]  void* seqan::mapFileSegment<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long>, long, long, seqan::FileMappingMode>(seqan::FileMapping<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >&, long, long, seqan::FileMappingMode) + 0x2c0\r\n  2     [0x1000019a9e0]  void* seqan::mapFileSegment<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long>, long, long>(seqan::FileMapping<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >&, long, long) + 0x28\r\n  3     [0x1000019572c]  bool seqan::_readFilePage<char, seqan::Tag<seqan::Output_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >, seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long>, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > > >(seqan::FilePageTable<char, seqan::Tag<seqan::Output_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&, seqan::FileMapping<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >&, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&) + 0x114\r\n  4     [0x10000195330]  bool seqan::_processFilePage<char, seqan::Tag<seqan::Output_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >, seqan::True>(seqan::FilePageTable<char, seqan::Tag<seqan::Output_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&, seqan::True const&) + 0xa0\r\n  5     [0x100001bca64]  seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >& seqan::fetchFilePage<char, seqan::Tag<seqan::Output_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >, long, unsigned int>(seqan::FilePageTable<char, seqan::Tag<seqan::Output_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&, long, unsigned int, bool) + 0x110\r\n  6     [0x100001bb154]  seqan::FileStreamBuffer<char, seqan::Tag<seqan::Output_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >::_nextWritePage() + 0x2b4\r\n  7     [0x100001b7274]  seqan::FileStreamBuffer<char, seqan::Tag<seqan::Output_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >::overflow(int) + 0xa4\r\n  8[0xfff80001006a804c]  std::basic_streambuf<char, std::char_traits<char> >::xsputn(char const*, long) + 0x98\r\n  9[0xfff8000100698070]  std::ostream::write(char const*, long) + 0x48\r\n 10     [0x10000158970]  FileStreamTest__WriteLarge<seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >::runTest() + 0x200\r\n 11     [0x1000010ff44]  seqan::TestSystem::runAll() + 0x230\r\n 12     [0x1000010ce18]  main + 0x30\r\n 13[0xfff8000100c45c30]  __libc_start_main + 0x110\r\n\r\nFileStreamTest_WriteLarge type parameter seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > FAILED\r\nFileStreamTest_SeekLarge type parameter seqan::Sync<void> OK\r\n/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/include/seqan/file/file_mapping.h:700 FAILED!  (mapFileSegment(4096,4096,3) failed (filesize=5000000): \"Invalid argument\")\r\n\r\nstack trace:\r\n  0     [0x1000010f7b8]  seqan::ClassTest::fail() + 0x30\r\n  1     [0x1000019e55c]  void* seqan::mapFileSegment<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long>, long, long, seqan::FileMappingMode>(seqan::FileMapping<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >&, long, long, seqan::FileMappingMode) + 0x2c0\r\n  2     [0x1000019a9e0]  void* seqan::mapFileSegment<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long>, long, long>(seqan::FileMapping<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >&, long, long) + 0x28\r\n  3     [0x10000195b18]  bool seqan::_readFilePage<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >, seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long>, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > > >(seqan::FilePageTable<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&, seqan::FileMapping<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >&, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&) + 0x110\r\n  4     [0x10000194e08]  bool seqan::_processFilePage<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >, seqan::True>(seqan::FilePageTable<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&, seqan::True const&) + 0xa0\r\n  5     [0x100001bcbd8]  seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >& seqan::fetchFilePage<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> >, long, unsigned int>(seqan::FilePageTable<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >&, long, unsigned int, bool) + 0x110\r\n  6     [0x100001bb5c8]  seqan::FileStreamBuffer<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >::_seek(long, seqan::Tag<seqan::Input_>) + 0x204\r\n  7     [0x100001b7788]  seqan::FileStreamBuffer<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >::seekpos(std::fpos<__mbstate_t>, std::_Ios_Openmode) + 0x15c\r\n  8[0xfff8000100680924]  std::istream::seekg(std::fpos<__mbstate_t>) + 0x90\r\n  9     [0x100001583c8]  FileStreamTest__SeekLarge<seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > >::runTest() + 0x268\r\n 10     [0x1000010ff44]  seqan::TestSystem::runAll() + 0x230\r\n 11     [0x1000010ce18]  main + 0x30\r\n 12[0xfff8000100c45c30]  __libc_start_main + 0x110\r\n\r\nFileStreamTest_SeekLarge type parameter seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned long> > FAILED\r\nVStreamTest_Construct type parameter seqan::Tag<seqan::BgzfFile_> OK\r\nVStreamTest_Construct type parameter seqan::Tag<seqan::GZFile_> OK\r\nVStreamTest_Construct type parameter seqan::Tag<seqan::BZ2File_> OK\r\nVStreamTest_Construct type parameter seqan::Tag<seqan::Nothing_> OK\r\nVStreamTest_OpenClose type parameter seqan::Tag<seqan::BgzfFile_> OK\r\nVStreamTest_OpenClose type parameter seqan::Tag<seqan::GZFile_> OK\r\nVStreamTest_OpenClose type parameter seqan::Tag<seqan::BZ2File_> OK\r\nVStreamTest_OpenClose type parameter seqan::Tag<seqan::Nothing_> OK\r\n/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/tests/stream/test_stream_virtual_stream.h:122 Assertion failed : CharString(sstr.str()) == CharString(FASTQ_EXAMPLE) was:  != @seq1\r\nCGATCGATAAT\r\n+\r\nIIIIIIIIIII\r\n@seq2\r\nCCTCTCTCTCCCT\r\n+\r\nIIIIIIIIIIIII\r\n@seq3\r\nCCCCCCCC\r\n+\r\nIIIIIIII\r\n\r\n\r\nstack trace:\r\n  0     [0x1000010f7b8]  seqan::ClassTest::fail() + 0x30\r\n  1     [0x1000015f358]  VStreamTest__Decompression<seqan::Tag<seqan::BgzfFile_> >::runTest() + 0x250\r\n  2     [0x1000010ff44]  seqan::TestSystem::runAll() + 0x230\r\n  3     [0x1000010ce18]  main + 0x30\r\n  4[0xfff8000100c45c30]  __libc_start_main + 0x110\r\n\r\nVStreamTest_Decompression type parameter seqan::Tag<seqan::BgzfFile_> FAILED\r\n```\r\n- [ ] test_test_tabix_io (Failed)\r\n```\r\nUnexpected exception of type std::ios_base::failure[abi:cxx11]; message: Invalid BGZF block header.: iostream error\r\ntest_tabix_io_read_indexed_vcf FAILED\r\n```\r\n- [ ] test_demo_dox_find_finder_index (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_dox_find_finder_index.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_dox_find_finder_index was -10.\r\n```\r\n- [ ] test_demo_dox_index_getOccurrences_getFrequency_range_getFibre (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_dox_index_getOccurrences_getFrequency_range_getFibre.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_dox_index_getOccurrences_getFrequency_range_getFibre was -10.\r\n```\r\n- [ ] test_demo_dox_index_length_countSequences (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_dox_index_length_countSequences.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_dox_index_length_countSequences was -10.\r\n```\r\n- [ ] test_demo_dox_index_open_save (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_dox_index_open_save.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_dox_index_open_save was -10.\r\n```\r\n- [ ] test_demo_tutorial_file_io_overview_example1 (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_file_io_overview_example1.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_file_io_overview_example1 was -6.\r\n```\r\n- [ ] test_demo_tutorial_file_io_overview_solution1 (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_file_io_overview_solution1.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_file_io_overview_solution1 was -6.\r\n```\r\n- [ ] test_demo_tutorial_file_io_overview_solution2 (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_file_io_overview_solution2.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_file_io_overview_solution2 was -6.\r\n```\r\n- [ ] test_demo_tutorial_file_io_overview_solution3 (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_file_io_overview_solution3.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_file_io_overview_solution3 was -6.\r\n```\r\n- [ ] test_demo_tutorial_index_iterators_index_assignment1 (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_index_iterators_index_assignment1.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_index_iterators_index_assignment1 was -10.\r\n```\r\n- [ ] test_demo_tutorial_index_iterators_index_assignment2 (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_index_iterators_index_assignment2.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_index_iterators_index_assignment2 was -10.\r\n```\r\n- [ ] test_demo_tutorial_index_iterators_index_bidirectional_search (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_index_iterators_index_bidirectional_search.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_index_iterators_index_bidirectional_search was -10.\r\n```\r\n- [ ] test_demo_tutorial_index_iterators_iterator_solution1 (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_index_iterators_iterator_solution1.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_index_iterators_iterator_solution1 was -10.\r\n```\r\n- [ ] test_demo_tutorial_indices_base (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_indices_base.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_indices_base was -10.\r\n```\r\n- [ ] test_demo_tutorial_pattern_matching_find_index_multiple (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_pattern_matching_find_index_multiple.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_pattern_matching_find_index_multiple was -10.\r\n```\r\n- [ ] test_demo_tutorial_sam_and_bam_io_example7 (Failed)\r\n```\r\nRunning /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_sam_and_bam_io_example7.\r\nERROR: Return code of /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/demo_tutorial_sam_and_bam_io_example7 was 1.\r\n```\r\n- [ ] app_test_bs_tools (Failed)\r\n```\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/bisar -e3 4 -e4 5 -o /tmp/tmpQ3gpBy/reads_se_N6000_0.CT_GA.verified.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/hg18_chr21_3000.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.fastq\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/bisar -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.5 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpQ3gpBy/reads_se_N6000_1.CT_GA.verified.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/hg18_chr21_3000.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.fastq\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/bisar -nse -nsi -nsd -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.5 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpQ3gpBy/reads_se_N6000_2.CT_GA.verified.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/hg18_chr21_3000.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.fastq\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/bisar -nse -nsi -nsd -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.2 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpQ3gpBy/reads_se_N6000_3.CT_GA.verified.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/hg18_chr21_3000.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.fastq\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/bisar -nse -nsi -nsd -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.8 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpQ3gpBy/reads_se_N6000_4.CT_GA.verified.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/hg18_chr21_3000.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.fastq\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/bisar -e3 4 -e4 5 -o /tmp/tmpQ3gpBy/reads_pe_N6000_0.CT_GA.verified.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_pe_N6000.CT_GA.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/hg18_chr21_3000.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_pe_N6000.L.fastq /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_pe_N6000.R.fastq\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\nDELETING TEMP DIR /tmp/tmpQ3gpBy\r\nExecuting test for bs_tools\r\n=========================\r\n\r\nSome tests only run on Linux+x86/amd64 because of rounding differences.\r\nbisar -e3 4 -e4 5 -o /tmp/tmpQ3gpBy/reads_se_N6000_0.CT_GA.verified.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/hg18_chr21_3000.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.fastq\r\nFAILED\r\nbisar -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.5 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpQ3gpBy/reads_se_N6000_1.CT_GA.verified.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/hg18_chr21_3000.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.fastq\r\nFAILED\r\nbisar -nse -nsi -nsd -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.5 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpQ3gpBy/reads_se_N6000_2.CT_GA.verified.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/hg18_chr21_3000.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.fastq\r\nFAILED\r\nbisar -nse -nsi -nsd -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.2 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpQ3gpBy/reads_se_N6000_3.CT_GA.verified.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/hg18_chr21_3000.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.fastq\r\nFAILED\r\nbisar -nse -nsi -nsd -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.8 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpQ3gpBy/reads_se_N6000_4.CT_GA.verified.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/hg18_chr21_3000.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_se_N6000.fastq\r\nFAILED\r\nbisar -e3 4 -e4 5 -o /tmp/tmpQ3gpBy/reads_pe_N6000_0.CT_GA.verified.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_pe_N6000.CT_GA.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/hg18_chr21_3000.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_pe_N6000.L.fastq /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/bs_tools/tests/reads_pe_N6000.R.fastq\r\nFAILED\r\n```\r\n- [ ] app_test_mason2 (Failed)\r\n```\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/mason_simulator -n 1000 -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -o /tmp/tmpKO3CPz/simulator.left1.fq -or /tmp/tmpKO3CPz/simulator.right1.fq -oa /tmp/tmpKO3CPz/simulator.out1.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/mason_simulator -n 1000 -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -iv /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random_var1.vcf -o /tmp/tmpKO3CPz/simulator.left2.fq -or /tmp/tmpKO3CPz/simulator.right2.fq -oa /tmp/tmpKO3CPz/simulator.out2.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/mason_simulator -n 1000 -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -iv /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random_var1.vcf -o /tmp/tmpKO3CPz/simulator.left7.fa -oa /tmp/tmpKO3CPz/simulator.out7.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/mason_simulator -n 1000 -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -o /tmp/tmpKO3CPz/simulator.left4.fa -oa /tmp/tmpKO3CPz/simulator.out4.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/mason_simulator --seq-technology 454 --fragment-mean-size 800 --454-read-length-mean 200 --454-read-length-stddev 20 -n 1000 -v -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -o /tmp/tmpKO3CPz/simulator.left8.fq -oa /tmp/tmpKO3CPz/simulator.out8.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\nDELETING TEMP DIR /tmp/tmpKO3CPz\r\nExecuting test for mason_variator\r\n======================\r\n\r\nmason_genome -l 1000 -o /tmp/tmpKO3CPz/genome.test1.fasta OK\r\nmason_genome -s 1 -l 1000 -l 100 -o /tmp/tmpKO3CPz/genome.test2.fasta OK\r\nmason_variator -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -n 2 -ov /tmp/tmpKO3CPz/random_var1.vcf -of /tmp/tmpKO3CPz/random_var1.fasta --snp-rate 0.001 --small-indel-rate 0.001 --sv-indel-rate 0.001 --sv-inversion-rate 0.001 --sv-translocation-rate 0.001 --sv-duplication-rate 0.001 --min-sv-size 50 --max-sv-size 100 --methylation-levels --meth-fasta-out /tmp/tmpKO3CPz/random_var1_meth.fasta --out-breakpoints /tmp/tmpKO3CPz/random_var1_bp.txt OK\r\nmason_variator -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -n 2 -ov /tmp/tmpKO3CPz/random_var2.vcf -of /tmp/tmpKO3CPz/random_var2.fasta --snp-rate 0.001 --small-indel-rate 0.001 --sv-indel-rate 0.001 --sv-inversion-rate 0.001 --sv-translocation-rate 0.001 --sv-duplication-rate 0.001 --min-sv-size 50 --max-sv-size 100 --methylation-levels --meth-fasta-in /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random_meth1.fasta --meth-fasta-out /tmp/tmpKO3CPz/random_var2_meth.fasta --out-breakpoints /tmp/tmpKO3CPz/random_var2_bp.txt OK\r\nmason_variator -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -n 2 -ov /tmp/tmpKO3CPz/random_var3.vcf -of /tmp/tmpKO3CPz/random_var3.fasta --snp-rate 0.001 --small-indel-rate 0.001 --sv-indel-rate 0.001 --sv-inversion-rate 0.001 --sv-translocation-rate 0.001 --sv-duplication-rate 0.001 --min-sv-size 50 --max-sv-size 100 --out-breakpoints /tmp/tmpKO3CPz/random_var3_bp.txt OK\r\nmason_variator -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/adeno_virus.fa -ov /tmp/tmpKO3CPz/random_var9.vcf -of /tmp/tmpKO3CPz/random_var9.fasta --sv-indel-rate 0.01 --sv-duplication-rate 0.01 --sv-inversion-rate 0.01 --min-sv-size 20 --max-sv-size 300 OK\r\nmason_materializer -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -iv /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random_var1.vcf -o /tmp/tmpKO3CPz/materializer.random_var1.fasta OK\r\nmason_materializer -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -iv /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random_var2.vcf -o /tmp/tmpKO3CPz/materializer.random_var2.fasta --meth-fasta-in /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random_meth1.fasta --meth-fasta-out /tmp/tmpKO3CPz/materializer.random_meth2.fasta OK\r\nmason_simulator -n 1000 -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -o /tmp/tmpKO3CPz/simulator.left1.fq -or /tmp/tmpKO3CPz/simulator.right1.fq -oa /tmp/tmpKO3CPz/simulator.out1.sam FAILED\r\nmason_simulator -n 1000 -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -iv /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random_var1.vcf -o /tmp/tmpKO3CPz/simulator.left2.fq -or /tmp/tmpKO3CPz/simulator.right2.fq -oa /tmp/tmpKO3CPz/simulator.out2.sam FAILED\r\nmason_simulator -n 1000 -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -o /tmp/tmpKO3CPz/simulator.left3.fa -or /tmp/tmpKO3CPz/simulator.right3.fa OK\r\nmason_simulator -n 1000 -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -iv /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random_var1.vcf -o /tmp/tmpKO3CPz/simulator.left7.fa -oa /tmp/tmpKO3CPz/simulator.out7.sam FAILED\r\nmason_simulator -n 1000 -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -o /tmp/tmpKO3CPz/simulator.left4.fa -oa /tmp/tmpKO3CPz/simulator.out4.sam FAILED\r\nmason_simulator -n 1000 -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta --meth-fasta-in /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random_meth1.fasta --methylation-levels --enable-bs-seq -o /tmp/tmpKO3CPz/simulator.left5.fq -or /tmp/tmpKO3CPz/simulator.right5.fq OK\r\nmason_simulator -n 1000 -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -iv /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random_var1.vcf --meth-fasta-in /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random_meth1.fasta --methylation-levels --enable-bs-seq -o /tmp/tmpKO3CPz/simulator.left6.fq -or /tmp/tmpKO3CPz/simulator.right6.fq OK\r\nmason_simulator --seq-technology 454 --fragment-mean-size 800 --454-read-length-mean 200 --454-read-length-stddev 20 -n 1000 -v -ir /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/mason2/tests/random.fasta -o /tmp/tmpKO3CPz/simulator.left8.fq -oa /tmp/tmpKO3CPz/simulator.out8.sam FAILED\r\n```\r\n- [ ] app_test_ngs_roi (Failed)\r\n```\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/bam2roi --strand-specific -if /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/ngs_roi/tests/micro_rna_sorted_2l.bam -of /tmp/tmpMgzOPE/out_mrna_2l_ss.roi\" was -6.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/bam2roi -if /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/ngs_roi/tests/micro_rna_sorted_2l.bam -of /tmp/tmpMgzOPE/out_mrna_2l.roi\" was -6.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n[…]\r\nbam2roi --strand-specific -if /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/ngs_roi/tests/micro_rna_sorted_2l.bam -of /tmp/tmpMgzOPE/out_mrna_2l_ss.roi FAILED\r\nbam2roi -if /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/ngs_roi/tests/micro_rna_sorted_2l.bam -of /tmp/tmpMgzOPE/out_mrna_2l.roi FAILED\r\n```\r\n- [ ] app_test_rabema (Failed)\r\n```\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/rabema_prepare_sam -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/rabema/tests/gold-adeno-hamming-08.sam -o /tmp/tmp5p_IQi/gold-adeno-hamming-08.by_qname.sam\" was -10.\r\nTraceback (most recent call last):\r\n  File \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/util/py_lib/seqan/app_tests.py\", line 248, in runTest\r\n    print >>sys.stderr, stdout_file.read()\r\nAttributeError: 'int' object has no attribute 'read'\r\nERROR (when executing \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/rabema_prepare_sam -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/rabema/tests/gold-adeno-hamming-08.sam -o /tmp/tmp5p_IQi/gold-adeno-hamming-08.by_qname.sam\"): 'int' object has no attribute 'read'\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/rabema_prepare_sam -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/rabema/tests/gold-adeno-edit-08.sam -o /tmp/tmp5p_IQi/gold-adeno-edit-08.by_qname.sam\" was -10.\r\nTraceback (most recent call last):\r\n  File \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/util/py_lib/seqan/app_tests.py\", line 248, in runTest\r\n    print >>sys.stderr, stdout_file.read()\r\nAttributeError: 'int' object has no attribute 'read'\r\nERROR (when executing \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/rabema_prepare_sam -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/rabema/tests/gold-adeno-edit-08.sam -o /tmp/tmp5p_IQi/gold-adeno-edit-08.by_qname.sam\"): 'int' object has no attribute 'read'\r\nDELETING TEMP DIR /tmp/tmp5p_IQi\r\nExecuting test for rabema\r\n=========================\r\n\r\nrabema_prepare_sam -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/rabema/tests/gold-adeno-hamming-08.sam -o /tmp/tmp5p_IQi/gold-adeno-hamming-08.by_qname.sam FAILED\r\nrabema_prepare_sam -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/rabema/tests/gold-adeno-edit-08.sam -o /tmp/tmp5p_IQi/gold-adeno-edit-08.by_qname.sam FAILED\r\n```\r\n- [ ] app_test_razers3 (Failed)\r\n```\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/razers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-of4-tc1.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\nExecuting test for razers3\r\n===========================\r\n\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-tc1.razers OK\r\nrazers3 -tc 1 -ng /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-ng-tc1.razers OK\r\nrazers3 -tc 1 -r /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-r-tc1.razers OK\r\nrazers3 -tc 1 -f /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-f-tc1.razers OK\r\nrazers3 -tc 1 -i 90 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-i90-tc1.razers OK\r\nrazers3 -tc 1 -i 91 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-i91-tc1.razers OK\r\nrazers3 -tc 1 -i 92 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-i92-tc1.razers OK\r\nrazers3 -tc 1 -i 93 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-i93-tc1.razers OK\r\nrazers3 -tc 1 -i 94 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-i94-tc1.razers OK\r\nrazers3 -tc 1 -i 95 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-i95-tc1.razers OK\r\nrazers3 -tc 1 -i 96 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-i96-tc1.razers OK\r\nrazers3 -tc 1 -i 97 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-i97-tc1.razers OK\r\nrazers3 -tc 1 -i 98 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-i98-tc1.razers OK\r\nrazers3 -tc 1 -i 99 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-i99-tc1.razers OK\r\nrazers3 -tc 1 -i 100 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-i100-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-of0-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-of1-tc1.fa OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-of2-tc1.eland OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-of3-tc1.gff OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-of4-tc1.sam FAILED\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-of5-tc1.afg OK\r\nrazers3 -tc 1 -so 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-so0-tc1.razers OK\r\nrazers3 -tc 1 -so 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmphSu_I1/se-adeno-reads36_1-so1-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-tc1.razers OK\r\nrazers3 -tc 1 -ng /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-ng-tc1.razers OK\r\nrazers3 -tc 1 -r /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-r-tc1.razers OK\r\nrazers3 -tc 1 -f /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-f-tc1.razers OK\r\nrazers3 -tc 1 -i 90 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-i90-tc1.razers OK\r\nrazers3 -tc 1 -i 91 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-i91-tc1.razers OK\r\nrazers3 -tc 1 -i 92 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-i92-tc1.razers OK\r\nrazers3 -tc 1 -i 93 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-i93-tc1.razers OK\r\nrazers3 -tc 1 -i 94 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-i94-tc1.razers OK\r\nrazers3 -tc 1 -i 95 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-i95-tc1.razers OK\r\nrazers3 -tc 1 -i 96 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-i96-tc1.razers OK\r\nrazers3 -tc 1 -i 97 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-i97-tc1.razers OK\r\nrazers3 -tc 1 -i 98 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-i98-tc1.ra--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/razers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-of4-tc1.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/razers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-of4-tc1.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\nzers OK\r\nrazers3 -tc 1 -i 99 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-i99-tc1.razers OK\r\nrazers3 -tc 1 -i 100 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-i100-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-of0-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-of1-tc1.fa OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-of2-tc1.eland OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-of3-tc1.gff OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-of4-tc1.sam FAILED\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-of5-tc1.afg OK\r\nrazers3 -tc 1 -so 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-so0-tc1.razers OK\r\nrazers3 -tc 1 -so 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmphSu_I1/se-adeno-reads100_1-so1-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-tc1.razers OK\r\nrazers3 -tc 1 -r /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-r-tc1.razers OK\r\nrazers3 -tc 1 -f /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-f-tc1.razers OK\r\nrazers3 -tc 1 -i 90 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-i90-tc1.razers OK\r\nrazers3 -tc 1 -i 91 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-i91-tc1.razers OK\r\nrazers3 -tc 1 -i 92 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-i92-tc1.razers OK\r\nrazers3 -tc 1 -i 93 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-i93-tc1.razers OK\r\nrazers3 -tc 1 -i 94 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-i94-tc1.razers OK\r\nrazers3 -tc 1 -i 95 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-i95-tc1.razers OK\r\nrazers3 -tc 1 -i 96 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-i96-tc1.razers OK\r\nrazers3 -tc 1 -i 97 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-i97-tc1.razers OK\r\nrazers3 -tc 1 -i 98 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-i98-tc1.razers OK\r\nrazers3 -tc 1 -i 99 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-i99-tc1.razers OK\r\nrazers3 -tc 1 -i 100 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-i100-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-of0-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-of1-tc1.fa OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-of2-tc1.eland OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-of3-tc1.gff OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /build/--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/razers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-of4-tc1.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\nDELETING TEMP DIR /tmp/tmphSu_I1\r\nseqan2-OMlpbu/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-of4-tc1.sam FAILED\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-of5-tc1.afg OK\r\nrazers3 -tc 1 -so 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-so0-tc1.razers OK\r\nrazers3 -tc 1 -so 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads36_2-so1-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-tc1.razers OK\r\nrazers3 -tc 1 -r /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-r-tc1.razers OK\r\nrazers3 -tc 1 -f /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-f-tc1.razers OK\r\nrazers3 -tc 1 -i 90 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-i90-tc1.razers OK\r\nrazers3 -tc 1 -i 91 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-i91-tc1.razers OK\r\nrazers3 -tc 1 -i 92 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-i92-tc1.razers OK\r\nrazers3 -tc 1 -i 93 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-i93-tc1.razers OK\r\nrazers3 -tc 1 -i 94 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-i94-tc1.razers OK\r\nrazers3 -tc 1 -i 95 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-i95-tc1.razers OK\r\nrazers3 -tc 1 -i 96 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-i96-tc1.razers OK\r\nrazers3 -tc 1 -i 97 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-i97-tc1.razers OK\r\nrazers3 -tc 1 -i 98 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-i98-tc1.razers OK\r\nrazers3 -tc 1 -i 99 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-i99-tc1.razers OK\r\nrazers3 -tc 1 -i 100 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-i100-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-of0-tc1.razers OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-of1-tc1.fa OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-of2-tc1.eland OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-of3-tc1.gff OK\r\nrazers3 -tc 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmphSu_I1/pe-adeno-reads100_2-of4-tc1.sam FAILED\r\n```\r\n- [ ] app_test_razers3_sequential (Failed)\r\n```\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/razers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-of4-tc0.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\nExecuting test for razers3\r\n===========================\r\n\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-tc0.razers OK\r\nrazers3 -tc 0 -ng /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-ng-tc0.razers OK\r\nrazers3 -tc 0 -r /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-r-tc0.razers OK\r\nrazers3 -tc 0 -f /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-f-tc0.razers OK\r\nrazers3 -tc 0 -i 90 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-i90-tc0.razers OK\r\nrazers3 -tc 0 -i 91 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-i91-tc0.razers OK\r\nrazers3 -tc 0 -i 92 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-i92-tc0.razers OK\r\nrazers3 -tc 0 -i 93 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-i93-tc0.razers OK\r\nrazers3 -tc 0 -i 94 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-i94-tc0.razers OK\r\nrazers3 -tc 0 -i 95 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-i95-tc0.razers OK\r\nrazers3 -tc 0 -i 96 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-i96-tc0.razers OK\r\nrazers3 -tc 0 -i 97 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-i97-tc0.razers OK\r\nrazers3 -tc 0 -i 98 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-i98-tc0.razers OK\r\nrazers3 -tc 0 -i 99 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-i99-tc0.razers OK\r\nrazers3 -tc 0 -i 100 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-i100-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-of0-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-of1-tc0.fa OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-of2-tc0.eland OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-of3-tc0.gff OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-of4-tc0.sam FAILED\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-of5-tc0.afg OK\r\nrazers3 -tc 0 -so 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-so0-tc0.razers OK\r\nrazers3 -tc 0 -so 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads36_1-so1-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-tc0.razers OK\r\nrazers3 -tc 0 -ng /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-ng-tc0.razers OK\r\nrazers3 -tc 0 -r /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-r-tc0.razers OK\r\nrazers3 -tc 0 -f /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-f-tc0.razers OK\r\nrazers3 -tc 0 -i 90 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-i90-tc0.razers OK\r\nrazers3 -tc 0 -i 91 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-i91-tc0.razers OK\r\nrazers3 -tc 0 -i 92 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-i92-tc0.razers OK\r\nrazers3 -tc 0 -i 93 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-i93-tc0.razers OK\r\nrazers3 -tc 0 -i 94 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-i94-tc0.razers OK\r\nrazers3 -tc 0 -i 95 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-i95-tc0.razers OK\r\nrazers3 -tc 0 -i 96 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-i96-tc0.razers OK\r\nrazers3 -tc 0 -i 97 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-i97-tc0.razers OK\r\nrazers3 -tc 0 -i 98 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-i98-tc0.ra--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/razers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-of4-tc0.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/razers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-of4-tc0.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\nzers OK\r\nrazers3 -tc 0 -i 99 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-i99-tc0.razers OK\r\nrazers3 -tc 0 -i 100 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-i100-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-of0-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-of1-tc0.fa OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-of2-tc0.eland OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-of3-tc0.gff OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-of4-tc0.sam FAILED\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-of5-tc0.afg OK\r\nrazers3 -tc 0 -so 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-so0-tc0.razers OK\r\nrazers3 -tc 0 -so 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmAUqmo/se-adeno-reads100_1-so1-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-tc0.razers OK\r\nrazers3 -tc 0 -r /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-r-tc0.razers OK\r\nrazers3 -tc 0 -f /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-f-tc0.razers OK\r\nrazers3 -tc 0 -i 90 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-i90-tc0.razers OK\r\nrazers3 -tc 0 -i 91 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-i91-tc0.razers OK\r\nrazers3 -tc 0 -i 92 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-i92-tc0.razers OK\r\nrazers3 -tc 0 -i 93 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-i93-tc0.razers OK\r\nrazers3 -tc 0 -i 94 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-i94-tc0.razers OK\r\nrazers3 -tc 0 -i 95 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-i95-tc0.razers OK\r\nrazers3 -tc 0 -i 96 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-i96-tc0.razers OK\r\nrazers3 -tc 0 -i 97 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-i97-tc0.razers OK\r\nrazers3 -tc 0 -i 98 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-i98-tc0.razers OK\r\nrazers3 -tc 0 -i 99 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-i99-tc0.razers OK\r\nrazers3 -tc 0 -i 100 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-i100-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-of0-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-of1-tc0.fa OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-of2-tc0.eland OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-of3-tc0.gff OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /build/--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/razers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-of4-tc0.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\nDELETING TEMP DIR /tmp/tmpmAUqmo\r\nseqan2-OMlpbu/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-of4-tc0.sam FAILED\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-of5-tc0.afg OK\r\nrazers3 -tc 0 -so 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-so0-tc0.razers OK\r\nrazers3 -tc 0 -so 1 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads36_2-so1-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-tc0.razers OK\r\nrazers3 -tc 0 -r /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-r-tc0.razers OK\r\nrazers3 -tc 0 -f /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-f-tc0.razers OK\r\nrazers3 -tc 0 -i 90 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-i90-tc0.razers OK\r\nrazers3 -tc 0 -i 91 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-i91-tc0.razers OK\r\nrazers3 -tc 0 -i 92 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-i92-tc0.razers OK\r\nrazers3 -tc 0 -i 93 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-i93-tc0.razers OK\r\nrazers3 -tc 0 -i 94 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-i94-tc0.razers OK\r\nrazers3 -tc 0 -i 95 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-i95-tc0.razers OK\r\nrazers3 -tc 0 -i 96 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-i96-tc0.razers OK\r\nrazers3 -tc 0 -i 97 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-i97-tc0.razers OK\r\nrazers3 -tc 0 -i 98 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-i98-tc0.razers OK\r\nrazers3 -tc 0 -i 99 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-i99-tc0.razers OK\r\nrazers3 -tc 0 -i 100 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-i100-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-of0-tc0.razers OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-of1-tc0.fa OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-of2-tc0.eland OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-of3-tc0.gff OK\r\nrazers3 -tc 0 /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-genome.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_1.fa /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmAUqmo/pe-adeno-reads100_2-of4-tc0.sam FAILED\r\n```\r\n- [ ] app_test_samcat (Failed)\r\n```\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/samcat /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a1.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a2.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a3.sam -o /tmp/tmpgN_i6g/ex1_merged.sam\" was -10.\r\nTraceback (most recent call last):\r\n  File \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/util/py_lib/seqan/app_tests.py\", line 248, in runTest\r\n    print >>sys.stderr, stdout_file.read()\r\nAttributeError: 'int' object has no attribute 'read'\r\nERROR (when executing \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/samcat /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a1.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a2.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a3.sam -o /tmp/tmpgN_i6g/ex1_merged.sam\"): 'int' object has no attribute 'read'\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/samcat /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a1.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a2.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a3.sam -o /tmp/tmpgN_i6g/ex1_merged.bam\" was -10.\r\nTraceback (most recent call last):\r\n  File \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/util/py_lib/seqan/app_tests.py\", line 248, in runTest\r\n    print >>sys.stderr, stdout_file.read()\r\nAttributeError: 'int' object has no attribute 'read'\r\nERROR (when executing \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/samcat /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a1.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a2.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a3.sam -o /tmp/tmpgN_i6g/ex1_merged.bam\"): 'int' object has no attribute 'read'\r\nDELETING TEMP DIR /tmp/tmpgN_i6g\r\nExecuting test for samcat\r\n=========================\r\n\r\n/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/samcat /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a1.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a2.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a3.sam -o /tmp/tmpgN_i6g/ex1_merged.sam\r\nFAILED\r\n/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/samcat /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a1.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a2.sam /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_a3.sam -o /tmp/tmpgN_i6g/ex1_merged.bam\r\nFAILED\r\n```\r\n- [ ] app_test_seqcons2 (Failed)\r\n```\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/seqcons2 -m overlap_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oc /tmp/tmpgcfEzv/alns1.overlap_consensus.fa -oa /tmp/tmpgcfEzv/alns1.overlap_consensus.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/seqcons2 -m nop -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oc /tmp/tmpgcfEzv/alns1.nop.fa -oa /tmp/tmpgcfEzv/alns1.nop.sam\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/seqcons2 -m overlap_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.overlap_consensus.sam -oc /tmp/tmpgcfEzv/alns1.overlap_consensus.fa\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/seqcons2 -m pos_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.pos_consensus.sam -oc /tmp/tmpgcfEzv/alns1.pos_consensus.fa\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/seqcons2 -m contig_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.contig_consensus.sam -oc /tmp/tmpgcfEzv/alns1.contig_consensus.fa\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/seqcons2 -m realign -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.realign.sam -oc /tmp/tmpgcfEzv/alns1.realign.fa\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/seqcons2 -m nop -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.nop.sam -oc /tmp/tmpgcfEzv/alns1.nop.fa\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/seqcons2 -m align_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/seqs2.fa -oa /tmp/tmpgcfEzv/seqs2.align_consensus.sam -oc /tmp/tmpgcfEzv/seqs2.align_consensus.fa\" was -10.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\nDELETING TEMP DIR /tmp/tmpgcfEzv\r\nExecuting test for seqcons2\r\n===========================\r\n\r\nseqcons2 -m overlap_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oc /tmp/tmpgcfEzv/alns1.overlap_consensus.fa -oa /tmp/tmpgcfEzv/alns1.overlap_consensus.sam FAILED\r\nseqcons2 -m nop -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oc /tmp/tmpgcfEzv/alns1.nop.fa -oa /tmp/tmpgcfEzv/alns1.nop.sam FAILED\r\nseqcons2 -m overlap_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.overlap_consensus.sam -oc /tmp/tmpgcfEzv/alns1.overlap_consensus.fa FAILED\r\nseqcons2 -m pos_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.pos_consensus.sam -oc /tmp/tmpgcfEzv/alns1.pos_consensus.fa FAILED\r\nseqcons2 -m contig_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.contig_consensus.sam -oc /tmp/tmpgcfEzv/alns1.contig_consensus.fa FAILED\r\nseqcons2 -m realign -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.realign.sam -oc /tmp/tmpgcfEzv/alns1.realign.fa FAILED\r\nseqcons2 -m nop -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.nop.sam -oc /tmp/tmpgcfEzv/alns1.nop.fa FAILED\r\nseqcons2 -m overlap_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.overlap_consensus.txt OK\r\nseqcons2 -m pos_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.pos_consensus.txt OK\r\nseqcons2 -m contig_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.contig_consensus.txt OK\r\nseqcons2 -m realign -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.realign.txt OK\r\nseqcons2 -m nop -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/alns1.sam -oa /tmp/tmpgcfEzv/alns1.nop.txt OK\r\nseqcons2 -m align_consensus -i /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/seqcons2/tests/seqs2.fa -oa /tmp/tmpgcfEzv/seqs2.align_consensus.sam -oc /tmp/tmpgcfEzv/seqs2.align_consensus.fa FAILED\r\n```\r\n- [ ] app_test_yara (Failed)\r\n```\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/yara_indexer /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/yara/tests/input/adeno-genome.fa -o /tmp/tmpzX5szH/adeno-genome\" was -10.\r\nTraceback (most recent call last):\r\n  File \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/util/py_lib/seqan/app_tests.py\", line 248, in runTest\r\n    print >>sys.stderr, stdout_file.read()\r\nAttributeError: 'int' object has no attribute 'read'\r\nERROR (when executing \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/yara_indexer /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/yara/tests/input/adeno-genome.fa -o /tmp/tmpzX5szH/adeno-genome\"): 'int' object has no attribute 'read'\r\n--- stdout begin --\r\nReturn code of command \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/yara_mapper /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/yara/tests/input/adeno-reads_1.fa -o /tmp/tmpzX5szH/adeno-reads_1.t1.sam --threads 1\" was 1.\r\nTraceback (most recent call last):\r\n  File \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/util/py_lib/seqan/app_tests.py\", line 248, in runTest\r\n    print >>sys.stderr, stdout_file.read()\r\nAttributeError: 'int' object has no attribute 'read'\r\nERROR (when executing \"/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/yara_mapper /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/yara/tests/input/adeno-reads_1.fa -o /tmp/tmpzX5szH/adeno-reads_1.t1.sam --threads 1\"): 'int' object has no attribute 'read'\r\nDELETING TEMP DIR /tmp/tmpzX5szH\r\nExecuting test for Yara\r\n==============================\r\n\r\n/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/yara_indexer /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/yara/tests/input/adeno-genome.fa -o /tmp/tmpzX5szH/adeno-genome FAILED\r\n/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-sparc64-linux-gnu/bin/yara_mapper /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/apps/yara/tests/input/adeno-reads_1.fa -o /tmp/tmpzX5szH/adeno-reads_1.t1.sam --threads 1 FAILED\r\n```"}}
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