{"action":"created","issue":{"url":"https://api.github.com/repos/etal/cnvkit/issues/197","repository_url":"https://api.github.com/repos/etal/cnvkit","labels_url":"https://api.github.com/repos/etal/cnvkit/issues/197/labels{/name}","comments_url":"https://api.github.com/repos/etal/cnvkit/issues/197/comments","events_url":"https://api.github.com/repos/etal/cnvkit/issues/197/events","html_url":"https://github.com/etal/cnvkit/issues/197","id":210784404,"number":197,"title":"SEG export generates files with overlapping segments","user":{"login":"lbeltrame","id":25192,"avatar_url":"https://avatars3.githubusercontent.com/u/25192?v=3","gravatar_id":"","url":"https://api.github.com/users/lbeltrame","html_url":"https://github.com/lbeltrame","followers_url":"https://api.github.com/users/lbeltrame/followers","following_url":"https://api.github.com/users/lbeltrame/following{/other_user}","gists_url":"https://api.github.com/users/lbeltrame/gists{/gist_id}","starred_url":"https://api.github.com/users/lbeltrame/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lbeltrame/subscriptions","organizations_url":"https://api.github.com/users/lbeltrame/orgs","repos_url":"https://api.github.com/users/lbeltrame/repos","events_url":"https://api.github.com/users/lbeltrame/events{/privacy}","received_events_url":"https://api.github.com/users/lbeltrame/received_events","type":"User","site_admin":false},"labels":[{"id":112211059,"url":"https://api.github.com/repos/etal/cnvkit/labels/bug","name":"bug","color":"fc2929","default":true}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2017-02-28T13:19:43Z","updated_at":"2017-03-01T17:43:59Z","closed_at":null,"body":"This is a problem because GISTIC will refuse to analyze them. My guess again is about zero vs 1-based coordinates and open vs close ended.\r\n\r\nExample:\r\n\r\n```\r\nLC0050_VES-UT-POUCH-cnvkit-call.cns.fixed 1 16332626  18809551  361 -0.284919\r\nLC0050_VES-UT-POUCH-cnvkit-call.cns.fixed 1 18809550  55571936  5433  0.238265\r\n```\r\n"},"comment":{"url":"https://api.github.com/repos/etal/cnvkit/issues/comments/283413904","html_url":"https://github.com/etal/cnvkit/issues/197#issuecomment-283413904","issue_url":"https://api.github.com/repos/etal/cnvkit/issues/197","id":283413904,"user":{"login":"etal","id":52723,"avatar_url":"https://avatars2.githubusercontent.com/u/52723?v=3","gravatar_id":"","url":"https://api.github.com/users/etal","html_url":"https://github.com/etal","followers_url":"https://api.github.com/users/etal/followers","following_url":"https://api.github.com/users/etal/following{/other_user}","gists_url":"https://api.github.com/users/etal/gists{/gist_id}","starred_url":"https://api.github.com/users/etal/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/etal/subscriptions","organizations_url":"https://api.github.com/users/etal/orgs","repos_url":"https://api.github.com/users/etal/repos","events_url":"https://api.github.com/users/etal/events{/privacy}","received_events_url":"https://api.github.com/users/etal/received_events","type":"User","site_admin":false},"created_at":"2017-03-01T17:43:59Z","updated_at":"2017-03-01T17:43:59Z","body":"OK, thanks for investigating. It sounds like I missed this part of the code in my last attempt to sort out 1-based SEG vs. 0-based CNVkit internals."}}
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