{"action":"created","issue":{"url":"https://api.github.com/repos/MonkeyLB/hicrep/issues/56","repository_url":"https://api.github.com/repos/MonkeyLB/hicrep","labels_url":"https://api.github.com/repos/MonkeyLB/hicrep/issues/56/labels{/name}","comments_url":"https://api.github.com/repos/MonkeyLB/hicrep/issues/56/comments","events_url":"https://api.github.com/repos/MonkeyLB/hicrep/issues/56/events","html_url":"https://github.com/MonkeyLB/hicrep/issues/56","id":233377192,"number":56,"title":"duplicate 'row.names' are not allowed","user":{"login":"haochenl","id":14918482,"avatar_url":"https://avatars0.githubusercontent.com/u/14918482?v=3","gravatar_id":"","url":"https://api.github.com/users/haochenl","html_url":"https://github.com/haochenl","followers_url":"https://api.github.com/users/haochenl/followers","following_url":"https://api.github.com/users/haochenl/following{/other_user}","gists_url":"https://api.github.com/users/haochenl/gists{/gist_id}","starred_url":"https://api.github.com/users/haochenl/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/haochenl/subscriptions","organizations_url":"https://api.github.com/users/haochenl/orgs","repos_url":"https://api.github.com/users/haochenl/repos","events_url":"https://api.github.com/users/haochenl/events{/privacy}","received_events_url":"https://api.github.com/users/haochenl/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2017-06-03T15:45:41Z","updated_at":"2017-06-03T22:59:07Z","closed_at":null,"body":"Hi,\r\n\r\nI prepared whole genome Hi-C matrices to run hicrep. However, I got the error as in the title. It seems that hicrep is trying to use the bin position as rownames when processing the data and encounters rowname duplicates when there are multiple chromosomes. So, does hicrep support genome-wide Hi-C matrix? If there is any other specification of the input matrix format, please let me know.\r\n\r\nThanks,\r\nHaochen"},"comment":{"url":"https://api.github.com/repos/MonkeyLB/hicrep/issues/comments/306006459","html_url":"https://github.com/MonkeyLB/hicrep/issues/56#issuecomment-306006459","issue_url":"https://api.github.com/repos/MonkeyLB/hicrep/issues/56","id":306006459,"user":{"login":"haochenl","id":14918482,"avatar_url":"https://avatars0.githubusercontent.com/u/14918482?v=3","gravatar_id":"","url":"https://api.github.com/users/haochenl","html_url":"https://github.com/haochenl","followers_url":"https://api.github.com/users/haochenl/followers","following_url":"https://api.github.com/users/haochenl/following{/other_user}","gists_url":"https://api.github.com/users/haochenl/gists{/gist_id}","starred_url":"https://api.github.com/users/haochenl/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/haochenl/subscriptions","organizations_url":"https://api.github.com/users/haochenl/orgs","repos_url":"https://api.github.com/users/haochenl/repos","events_url":"https://api.github.com/users/haochenl/events{/privacy}","received_events_url":"https://api.github.com/users/haochenl/received_events","type":"User","site_admin":false},"created_at":"2017-06-03T22:59:07Z","updated_at":"2017-06-03T22:59:07Z","body":"We internally store genome-wide matrix in hdf5 format (similar as what\ncooler does). But I don't think hicrep supports that.\n\nHaochen\nOn Sat, Jun 3, 2017 at 12:49 PM Tao Yang <notifications@github.com> wrote:\n\n> Hi Haochen,\n>\n> What is the format of genome-wide Hi-C data?\n>\n> Tao\n>\n> What is\n>\n> On Sat, Jun 3, 2017 at 11:45 AM Haochen Li <notifications@github.com>\n> wrote:\n>\n> > Hi,\n> >\n> > I prepared whole genome Hi-C matrices to run hicrep. However, I got the\n> > error as in the title. It seems that hicrep is trying to use the bin\n> > position as rownames when processing the data and encounters rowname\n> > duplicates when there are multiple chromosomes. So, does hicrep support\n> > genome-wide Hi-C matrix? If there is any other specification of the input\n> > matrix format, please let me know.\n> >\n> > Thanks,\n> > Haochen\n> >\n> > —\n> > You are receiving this because you are subscribed to this thread.\n> > Reply to this email directly, view it on GitHub\n> > <https://github.com/MonkeyLB/hicrep/issues/56>, or mute the thread\n> > <\n> https://github.com/notifications/unsubscribe-auth/ATEu6_UGgWJqumGVt-EoW9OobBkrLb87ks5sAX-lgaJpZM4NvHo6\n> >\n> > .\n> >\n> --\n> Tao Yang\n> PhD Candidate\n> Bioinformatics and Genomics\n> Penn State University\n>\n> —\n> You are receiving this because you authored the thread.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/MonkeyLB/hicrep/issues/56#issuecomment-305997451>, or mute\n> the thread\n> <https://github.com/notifications/unsubscribe-auth/AOOjUge2boKi82-UZVlizHK7S8qtA1fCks5sAbjigaJpZM4NvHo6>\n> .\n>\n"}}
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