{"action":"opened","issue":{"url":"https://api.github.com/repos/smithlabcode/methpipe/issues/108","repository_url":"https://api.github.com/repos/smithlabcode/methpipe","labels_url":"https://api.github.com/repos/smithlabcode/methpipe/issues/108/labels{/name}","comments_url":"https://api.github.com/repos/smithlabcode/methpipe/issues/108/comments","events_url":"https://api.github.com/repos/smithlabcode/methpipe/issues/108/events","html_url":"https://github.com/smithlabcode/methpipe/issues/108","id":252435107,"number":108,"title":"issue in getting individual differentially methylated sites","user":{"login":"lxcfuji","id":8293914,"avatar_url":"https://avatars1.githubusercontent.com/u/8293914?v=4","gravatar_id":"","url":"https://api.github.com/users/lxcfuji","html_url":"https://github.com/lxcfuji","followers_url":"https://api.github.com/users/lxcfuji/followers","following_url":"https://api.github.com/users/lxcfuji/following{/other_user}","gists_url":"https://api.github.com/users/lxcfuji/gists{/gist_id}","starred_url":"https://api.github.com/users/lxcfuji/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lxcfuji/subscriptions","organizations_url":"https://api.github.com/users/lxcfuji/orgs","repos_url":"https://api.github.com/users/lxcfuji/repos","events_url":"https://api.github.com/users/lxcfuji/events{/privacy}","received_events_url":"https://api.github.com/users/lxcfuji/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2017-08-23T22:28:17Z","updated_at":"2017-08-23T22:28:17Z","closed_at":null,"body":"Hi Smith lab,\r\nI'm get dm_cpgs from cpgs.adjusted.bed following pipeline page14 code:\r\n$awk '$7 <=0.01 \"{print $0;$}\"' cpgs.adjusted.bed >dm_cpgs.bed\r\n\r\nit cannot grep p-values that using scientific notation but smaller than 0.01. \r\nfor example, if it is 6.1e-5 in 7th column, then it won’t print even its smaller than 0.01;\r\nalso, it will grep p-values beginning with \"0.01\" but larger than 0.01\r\nfor example, if it is 0.017 in 7th column, then it will print out as well.\r\nI think....you can delete \"{ print $0; $}\" part to avoid this issue, but i'm not 100% sure and why is that. \r\nplease confirm and explain this part of code, espescially the second \"$\" (Sorry i'm not a CS person).\r\nThank you\r\n"}}
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