{"action":"created","issue":{"url":"https://api.github.com/repos/BD2KGenomics/toil/issues/1921","repository_url":"https://api.github.com/repos/BD2KGenomics/toil","labels_url":"https://api.github.com/repos/BD2KGenomics/toil/issues/1921/labels{/name}","comments_url":"https://api.github.com/repos/BD2KGenomics/toil/issues/1921/comments","events_url":"https://api.github.com/repos/BD2KGenomics/toil/issues/1921/events","html_url":"https://github.com/BD2KGenomics/toil/pull/1921","id":264989679,"number":1921,"title":"Py.test collection errors (closes #1919)","user":{"login":"ejacox","id":21335787,"avatar_url":"https://avatars2.githubusercontent.com/u/21335787?v=4","gravatar_id":"","url":"https://api.github.com/users/ejacox","html_url":"https://github.com/ejacox","followers_url":"https://api.github.com/users/ejacox/followers","following_url":"https://api.github.com/users/ejacox/following{/other_user}","gists_url":"https://api.github.com/users/ejacox/gists{/gist_id}","starred_url":"https://api.github.com/users/ejacox/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ejacox/subscriptions","organizations_url":"https://api.github.com/users/ejacox/orgs","repos_url":"https://api.github.com/users/ejacox/repos","events_url":"https://api.github.com/users/ejacox/events{/privacy}","received_events_url":"https://api.github.com/users/ejacox/received_events","type":"User","site_admin":false},"labels":[{"id":194037021,"url":"https://api.github.com/repos/BD2KGenomics/toil/labels/in%20progress","name":"in progress","color":"ededed","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2017-10-12T15:39:17Z","updated_at":"2017-10-17T09:10:51Z","closed_at":null,"author_association":"CONTRIBUTOR","pull_request":{"url":"https://api.github.com/repos/BD2KGenomics/toil/pulls/1921","html_url":"https://github.com/BD2KGenomics/toil/pull/1921","diff_url":"https://github.com/BD2KGenomics/toil/pull/1921.diff","patch_url":"https://github.com/BD2KGenomics/toil/pull/1921.patch"},"body":"I tried some of the work arounds that @jessebrennan was suggesting. They were getting complicated quickly. The only needed extra is aws to avoid the errors. This PR just makes a note of that. \r\n\r\nFixed some bad links in the docs, too."},"comment":{"url":"https://api.github.com/repos/BD2KGenomics/toil/issues/comments/337168863","html_url":"https://github.com/BD2KGenomics/toil/pull/1921#issuecomment-337168863","issue_url":"https://api.github.com/repos/BD2KGenomics/toil/issues/1921","id":337168863,"user":{"login":"ejacox","id":21335787,"avatar_url":"https://avatars2.githubusercontent.com/u/21335787?v=4","gravatar_id":"","url":"https://api.github.com/users/ejacox","html_url":"https://github.com/ejacox","followers_url":"https://api.github.com/users/ejacox/followers","following_url":"https://api.github.com/users/ejacox/following{/other_user}","gists_url":"https://api.github.com/users/ejacox/gists{/gist_id}","starred_url":"https://api.github.com/users/ejacox/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ejacox/subscriptions","organizations_url":"https://api.github.com/users/ejacox/orgs","repos_url":"https://api.github.com/users/ejacox/repos","events_url":"https://api.github.com/users/ejacox/events{/privacy}","received_events_url":"https://api.github.com/users/ejacox/received_events","type":"User","site_admin":false},"created_at":"2017-10-17T09:10:51Z","updated_at":"2017-10-17T09:10:51Z","author_association":"CONTRIBUTOR","body":"Those bits of codes in the comments. Py.test treats them as tests. See parseSetEnv() in common.py for an example."}}
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