{"action":"closed","number":793,"pull_request":{"url":"https://api.github.com/repos/vgteam/vg/pulls/793","id":119320400,"html_url":"https://github.com/vgteam/vg/pull/793","diff_url":"https://github.com/vgteam/vg/pull/793.diff","patch_url":"https://github.com/vgteam/vg/pull/793.patch","issue_url":"https://api.github.com/repos/vgteam/vg/issues/793","number":793,"state":"closed","locked":false,"title":"Add vg trace functionality","user":{"login":"yoheirosen","id":7969838,"avatar_url":"https://avatars0.githubusercontent.com/u/7969838?v=3","gravatar_id":"","url":"https://api.github.com/users/yoheirosen","html_url":"https://github.com/yoheirosen","followers_url":"https://api.github.com/users/yoheirosen/followers","following_url":"https://api.github.com/users/yoheirosen/following{/other_user}","gists_url":"https://api.github.com/users/yoheirosen/gists{/gist_id}","starred_url":"https://api.github.com/users/yoheirosen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yoheirosen/subscriptions","organizations_url":"https://api.github.com/users/yoheirosen/orgs","repos_url":"https://api.github.com/users/yoheirosen/repos","events_url":"https://api.github.com/users/yoheirosen/events{/privacy}","received_events_url":"https://api.github.com/users/yoheirosen/received_events","type":"User","site_admin":false},"body":"This is a new pull request superseding (https://github.com/vgteam/vg/pull/787) which instead brings in only the `vg trace` code without `vg haplo`\r\n\r\nBrief description of `vg trace`:\r\n\r\n`vg trace` acts as the backend to sequenceTubeMaps taking a node in an xg index and distance n as input and returning subhaplotypes of length n expressed as json as output","created_at":"2017-05-06T23:51:27Z","updated_at":"2017-05-31T20:06:31Z","closed_at":"2017-05-31T20:06:31Z","merged_at":"2017-05-31T20:06:31Z","merge_commit_sha":"e11d12e86bbec84cef1b22756426db37a705ee3d","assignee":null,"assignees":[],"requested_reviewers":[],"milestone":null,"commits_url":"https://api.github.com/repos/vgteam/vg/pulls/793/commits","review_comments_url":"https://api.github.com/repos/vgteam/vg/pulls/793/comments","review_comment_url":"https://api.github.com/repos/vgteam/vg/pulls/comments{/number}","comments_url":"https://api.github.com/repos/vgteam/vg/issues/793/comments","statuses_url":"https://api.github.com/repos/vgteam/vg/statuses/4cb2280d3c408aa0a84429d037b47ef53edca758","head":{"label":"yoheirosen:trace-only","ref":"trace-only","sha":"4cb2280d3c408aa0a84429d037b47ef53edca758","user":{"login":"yoheirosen","id":7969838,"avatar_url":"https://avatars0.githubusercontent.com/u/7969838?v=3","gravatar_id":"","url":"https://api.github.com/users/yoheirosen","html_url":"https://github.com/yoheirosen","followers_url":"https://api.github.com/users/yoheirosen/followers","following_url":"https://api.github.com/users/yoheirosen/following{/other_user}","gists_url":"https://api.github.com/users/yoheirosen/gists{/gist_id}","starred_url":"https://api.github.com/users/yoheirosen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yoheirosen/subscriptions","organizations_url":"https://api.github.com/users/yoheirosen/orgs","repos_url":"https://api.github.com/users/yoheirosen/repos","events_url":"https://api.github.com/users/yoheirosen/events{/privacy}","received_events_url":"https://api.github.com/users/yoheirosen/received_events","type":"User","site_admin":false},"repo":{"id":61389375,"name":"vg","full_name":"yoheirosen/vg","owner":{"login":"yoheirosen","id":7969838,"avatar_url":"https://avatars0.githubusercontent.com/u/7969838?v=3","gravatar_id":"","url":"https://api.github.com/users/yoheirosen","html_url":"https://github.com/yoheirosen","followers_url":"https://api.github.com/users/yoheirosen/followers","following_url":"https://api.github.com/users/yoheirosen/following{/other_user}","gists_url":"https://api.github.com/users/yoheirosen/gists{/gist_id}","starred_url":"https://api.github.com/users/yoheirosen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yoheirosen/subscriptions","organizations_url":"https://api.github.com/users/yoheirosen/orgs","repos_url":"https://api.github.com/users/yoheirosen/repos","events_url":"https://api.github.com/users/yoheirosen/events{/privacy}","received_events_url":"https://api.github.com/users/yoheirosen/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/yoheirosen/vg","description":"tools for working with variation graphs","fork":true,"url":"https://api.github.com/repos/yoheirosen/vg","forks_url":"https://api.github.com/repos/yoheirosen/vg/forks","keys_url":"https://api.github.com/repos/yoheirosen/vg/keys{/key_id}","collaborators_url":"https://api.github.com/repos/yoheirosen/vg/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/yoheirosen/vg/teams","hooks_url":"https://api.github.com/repos/yoheirosen/vg/hooks","issue_events_url":"https://api.github.com/repos/yoheirosen/vg/issues/events{/number}","events_url":"https://api.github.com/repos/yoheirosen/vg/events","assignees_url":"https://api.github.com/repos/yoheirosen/vg/assignees{/user}","branches_url":"https://api.github.com/repos/yoheirosen/vg/branches{/branch}","tags_url":"https://api.github.com/repos/yoheirosen/vg/tags","blobs_url":"https://api.github.com/repos/yoheirosen/vg/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/yoheirosen/vg/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/yoheirosen/vg/git/refs{/sha}","trees_url":"https://api.github.com/repos/yoheirosen/vg/git/trees{/sha}","statuses_url":"https://api.github.com/repos/yoheirosen/vg/statuses/{sha}","languages_url":"https://api.github.com/repos/yoheirosen/vg/languages","stargazers_url":"https://api.github.com/repos/yoheirosen/vg/stargazers","contributors_url":"https://api.github.com/repos/yoheirosen/vg/contributors","subscribers_url":"https://api.github.com/repos/yoheirosen/vg/subscribers","subscription_url":"https://api.github.com/repos/yoheirosen/vg/subscription","commits_url":"https://api.github.com/repos/yoheirosen/vg/commits{/sha}","git_commits_url":"https://api.github.com/repos/yoheirosen/vg/git/commits{/sha}","comments_url":"https://api.github.com/repos/yoheirosen/vg/comments{/number}","issue_comment_url":"https://api.github.com/repos/yoheirosen/vg/issues/comments{/number}","contents_url":"https://api.github.com/repos/yoheirosen/vg/contents/{+path}","compare_url":"https://api.github.com/repos/yoheirosen/vg/compare/{base}...{head}","merges_url":"https://api.github.com/repos/yoheirosen/vg/merges","archive_url":"https://api.github.com/repos/yoheirosen/vg/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/yoheirosen/vg/downloads","issues_url":"https://api.github.com/repos/yoheirosen/vg/issues{/number}","pulls_url":"https://api.github.com/repos/yoheirosen/vg/pulls{/number}","milestones_url":"https://api.github.com/repos/yoheirosen/vg/milestones{/number}","notifications_url":"https://api.github.com/repos/yoheirosen/vg/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/yoheirosen/vg/labels{/name}","releases_url":"https://api.github.com/repos/yoheirosen/vg/releases{/id}","deployments_url":"https://api.github.com/repos/yoheirosen/vg/deployments","created_at":"2016-06-17T17:05:11Z","updated_at":"2016-06-17T17:05:14Z","pushed_at":"2017-05-31T17:28:21Z","git_url":"git://github.com/yoheirosen/vg.git","ssh_url":"git@github.com:yoheirosen/vg.git","clone_url":"https://github.com/yoheirosen/vg.git","svn_url":"https://github.com/yoheirosen/vg","homepage":"https://github.com/vgteam/vg#vg","size":18811,"stargazers_count":0,"watchers_count":0,"language":"C++","has_issues":false,"has_projects":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":0,"default_branch":"master"}},"base":{"label":"vgteam:master","ref":"master","sha":"32dc55852917c06a1ecbe5f2acdbae0c1b2d6117","user":{"login":"vgteam","id":15925452,"avatar_url":"https://avatars2.githubusercontent.com/u/15925452?v=3","gravatar_id":"","url":"https://api.github.com/users/vgteam","html_url":"https://github.com/vgteam","followers_url":"https://api.github.com/users/vgteam/followers","following_url":"https://api.github.com/users/vgteam/following{/other_user}","gists_url":"https://api.github.com/users/vgteam/gists{/gist_id}","starred_url":"https://api.github.com/users/vgteam/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vgteam/subscriptions","organizations_url":"https://api.github.com/users/vgteam/orgs","repos_url":"https://api.github.com/users/vgteam/repos","events_url":"https://api.github.com/users/vgteam/events{/privacy}","received_events_url":"https://api.github.com/users/vgteam/received_events","type":"Organization","site_admin":false},"repo":{"id":24727800,"name":"vg","full_name":"vgteam/vg","owner":{"login":"vgteam","id":15925452,"avatar_url":"https://avatars2.githubusercontent.com/u/15925452?v=3","gravatar_id":"","url":"https://api.github.com/users/vgteam","html_url":"https://github.com/vgteam","followers_url":"https://api.github.com/users/vgteam/followers","following_url":"https://api.github.com/users/vgteam/following{/other_user}","gists_url":"https://api.github.com/users/vgteam/gists{/gist_id}","starred_url":"https://api.github.com/users/vgteam/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vgteam/subscriptions","organizations_url":"https://api.github.com/users/vgteam/orgs","repos_url":"https://api.github.com/users/vgteam/repos","events_url":"https://api.github.com/users/vgteam/events{/privacy}","received_events_url":"https://api.github.com/users/vgteam/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/vgteam/vg","description":"tools for working with genome variation graphs","fork":false,"url":"https://api.github.com/repos/vgteam/vg","forks_url":"https://api.github.com/repos/vgteam/vg/forks","keys_url":"https://api.github.com/repos/vgteam/vg/keys{/key_id}","collaborators_url":"https://api.github.com/repos/vgteam/vg/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/vgteam/vg/teams","hooks_url":"https://api.github.com/repos/vgteam/vg/hooks","issue_events_url":"https://api.github.com/repos/vgteam/vg/issues/events{/number}","events_url":"https://api.github.com/repos/vgteam/vg/events","assignees_url":"https://api.github.com/repos/vgteam/vg/assignees{/user}","branches_url":"https://api.github.com/repos/vgteam/vg/branches{/branch}","tags_url":"https://api.github.com/repos/vgteam/vg/tags","blobs_url":"https://api.github.com/repos/vgteam/vg/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/vgteam/vg/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/vgteam/vg/git/refs{/sha}","trees_url":"https://api.github.com/repos/vgteam/vg/git/trees{/sha}","statuses_url":"https://api.github.com/repos/vgteam/vg/statuses/{sha}","languages_url":"https://api.github.com/repos/vgteam/vg/languages","stargazers_url":"https://api.github.com/repos/vgteam/vg/stargazers","contributors_url":"https://api.github.com/repos/vgteam/vg/contributors","subscribers_url":"https://api.github.com/repos/vgteam/vg/subscribers","subscription_url":"https://api.github.com/repos/vgteam/vg/subscription","commits_url":"https://api.github.com/repos/vgteam/vg/commits{/sha}","git_commits_url":"https://api.github.com/repos/vgteam/vg/git/commits{/sha}","comments_url":"https://api.github.com/repos/vgteam/vg/comments{/number}","issue_comment_url":"https://api.github.com/repos/vgteam/vg/issues/comments{/number}","contents_url":"https://api.github.com/repos/vgteam/vg/contents/{+path}","compare_url":"https://api.github.com/repos/vgteam/vg/compare/{base}...{head}","merges_url":"https://api.github.com/repos/vgteam/vg/merges","archive_url":"https://api.github.com/repos/vgteam/vg/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/vgteam/vg/downloads","issues_url":"https://api.github.com/repos/vgteam/vg/issues{/number}","pulls_url":"https://api.github.com/repos/vgteam/vg/pulls{/number}","milestones_url":"https://api.github.com/repos/vgteam/vg/milestones{/number}","notifications_url":"https://api.github.com/repos/vgteam/vg/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/vgteam/vg/labels{/name}","releases_url":"https://api.github.com/repos/vgteam/vg/releases{/id}","deployments_url":"https://api.github.com/repos/vgteam/vg/deployments","created_at":"2014-10-02T16:54:27Z","updated_at":"2017-05-31T07:24:50Z","pushed_at":"2017-05-31T20:06:31Z","git_url":"git://github.com/vgteam/vg.git","ssh_url":"git@github.com:vgteam/vg.git","clone_url":"https://github.com/vgteam/vg.git","svn_url":"https://github.com/vgteam/vg","homepage":"https://github.com/vgteam/vg#vg","size":18562,"stargazers_count":225,"watchers_count":225,"language":"C++","has_issues":true,"has_projects":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":63,"mirror_url":null,"open_issues_count":190,"forks":63,"open_issues":190,"watchers":225,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/vgteam/vg/pulls/793"},"html":{"href":"https://github.com/vgteam/vg/pull/793"},"issue":{"href":"https://api.github.com/repos/vgteam/vg/issues/793"},"comments":{"href":"https://api.github.com/repos/vgteam/vg/issues/793/comments"},"review_comments":{"href":"https://api.github.com/repos/vgteam/vg/pulls/793/comments"},"review_comment":{"href":"https://api.github.com/repos/vgteam/vg/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/vgteam/vg/pulls/793/commits"},"statuses":{"href":"https://api.github.com/repos/vgteam/vg/statuses/4cb2280d3c408aa0a84429d037b47ef53edca758"}},"merged":true,"mergeable":null,"rebaseable":null,"mergeable_state":"unknown","merged_by":{"login":"adamnovak","id":5062495,"avatar_url":"https://avatars2.githubusercontent.com/u/5062495?v=3","gravatar_id":"","url":"https://api.github.com/users/adamnovak","html_url":"https://github.com/adamnovak","followers_url":"https://api.github.com/users/adamnovak/followers","following_url":"https://api.github.com/users/adamnovak/following{/other_user}","gists_url":"https://api.github.com/users/adamnovak/gists{/gist_id}","starred_url":"https://api.github.com/users/adamnovak/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/adamnovak/subscriptions","organizations_url":"https://api.github.com/users/adamnovak/orgs","repos_url":"https://api.github.com/users/adamnovak/repos","events_url":"https://api.github.com/users/adamnovak/events{/privacy}","received_events_url":"https://api.github.com/users/adamnovak/received_events","type":"User","site_admin":false},"comments":3,"review_comments":0,"maintainer_can_modify":false,"commits":12,"additions":340,"deletions":2,"changed_files":5}}
{"actor":{"display_login":"adamnovak"}}