{"action":"opened","issue":{"url":"https://api.github.com/repos/cmks/DAS_Tool/issues/12","repository_url":"https://api.github.com/repos/cmks/DAS_Tool","labels_url":"https://api.github.com/repos/cmks/DAS_Tool/issues/12/labels{/name}","comments_url":"https://api.github.com/repos/cmks/DAS_Tool/issues/12/comments","events_url":"https://api.github.com/repos/cmks/DAS_Tool/issues/12/events","html_url":"https://github.com/cmks/DAS_Tool/issues/12","id":255439351,"number":12,"title":"Error on example dataset","user":{"login":"snayfach","id":2104237,"avatar_url":"https://avatars1.githubusercontent.com/u/2104237?v=4","gravatar_id":"","url":"https://api.github.com/users/snayfach","html_url":"https://github.com/snayfach","followers_url":"https://api.github.com/users/snayfach/followers","following_url":"https://api.github.com/users/snayfach/following{/other_user}","gists_url":"https://api.github.com/users/snayfach/gists{/gist_id}","starred_url":"https://api.github.com/users/snayfach/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/snayfach/subscriptions","organizations_url":"https://api.github.com/users/snayfach/orgs","repos_url":"https://api.github.com/users/snayfach/repos","events_url":"https://api.github.com/users/snayfach/events{/privacy}","received_events_url":"https://api.github.com/users/snayfach/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2017-09-05T23:41:49Z","updated_at":"2017-09-05T23:41:49Z","closed_at":null,"author_association":"NONE","body":"I'm having some trouble getting the program to run without errors using the example dataset.\r\n\r\nHere's the command I ran:\r\n```\r\nDAS_Tool-1.0.0$ ./DAS_Tool -i sample_data/sample.human.gut_concoct_scaffolds2bin.tsv,sample_data/sample.human.gut_maxbin2_scaffolds2bin.tsv,sample_data/sample.human.gut_metabat_scaffolds2bin.tsv,sample_data/sample.human.gut_tetraESOM_scaffolds2bin.tsv -l concoct,maxbin,metabat,tetraESOM -c sample_data/sample.human.gut_contigs.fa -o sample_output/DASToolRun --threads 20 --debug\r\n```\r\n\r\nAnd here's the error I got:\r\n```\r\npredicting genes using prodigal\r\nidentifying single copy genes using usearch\r\nrunning DAS Tool with 20 threads\r\nevaluating bin-sets\r\nError in { :\r\n  task 2 failed - \"Item 1 has no length. Provide at least one item (such as NA, NA_integer_ etc) to be repeated to match the 1 rows in the longest column. Or, all columns can be 0 length, for insert()ing rows into.\"\r\nCalls: cherry_pick -> evaluateBinsDTParallel_2 -> %dopar% -> <Anonymous>\r\nExecution halted\r\n```\r\n\r\nAnd here's the log file:\r\n```\r\n1. scaffolds_to_bins sample_data/sample.human.gut_concoct_scaffolds2bin.tsv,sample_data/sample.human.gut_maxbin2_scaffolds2bin.tsv,sample_data/sample.human.gut_metabat_scaffolds2bin.tsv,sample_data/sample.human.gut_tetraESOM_scaffolds2bin.tsv\r\n2. bin_set_labels concoct,maxbin,metabat,tetraESOM\r\n3. assembly sample_data/sample.human.gut_contigs.fa\r\n4. bac_scg_matrix sample_output/DASToolRun_proteins.faa.bacteria.scg\r\n5. arc_scg_matrix sample_output/DASToolRun_proteins.faa.archaea.scg\r\n6. output_basename sample_output/DASToolRun\r\n7. score_threshold 0.1\r\n8. threads 20\r\n9. workingdir DAS_Tool-1.0.0\r\n10. length_table sample_output/DASToolRun.seqlength\r\n11. write_bin_evals TRUE\r\n12. create_plots TRUE\r\n13. debug TRUE\r\nbinS1 #1 dimensions: 0 x 2\r\n\r\nbinS1 #2 dimensions: 0 x 2\r\n\r\nbinS1 #3 dimensions: 0 x 2\r\n\r\nbinS1 #4 dimensions: 0 x 2\r\n\r\nbin_table dimensions: 0 x 2\r\n```\r\n\r\nAny ideas what's wrong?\r\n\r\nThanks,\r\nStephen"}}
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