{"action":"created","issue":{"url":"https://api.github.com/repos/PacificBiosciences/pitchfork/issues/364","repository_url":"https://api.github.com/repos/PacificBiosciences/pitchfork","labels_url":"https://api.github.com/repos/PacificBiosciences/pitchfork/issues/364/labels{/name}","comments_url":"https://api.github.com/repos/PacificBiosciences/pitchfork/issues/364/comments","events_url":"https://api.github.com/repos/PacificBiosciences/pitchfork/issues/364/events","html_url":"https://github.com/PacificBiosciences/pitchfork/issues/364","id":200115213,"number":364,"title":"Error with \"make pbccs\"","user":{"login":"a-velt","id":23554476,"avatar_url":"https://avatars.githubusercontent.com/u/23554476?v=3","gravatar_id":"","url":"https://api.github.com/users/a-velt","html_url":"https://github.com/a-velt","followers_url":"https://api.github.com/users/a-velt/followers","following_url":"https://api.github.com/users/a-velt/following{/other_user}","gists_url":"https://api.github.com/users/a-velt/gists{/gist_id}","starred_url":"https://api.github.com/users/a-velt/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/a-velt/subscriptions","organizations_url":"https://api.github.com/users/a-velt/orgs","repos_url":"https://api.github.com/users/a-velt/repos","events_url":"https://api.github.com/users/a-velt/events{/privacy}","received_events_url":"https://api.github.com/users/a-velt/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":6,"created_at":"2017-01-11T14:58:17Z","updated_at":"2017-01-13T18:33:13Z","closed_at":"2017-01-13T18:33:13Z","body":"Dear developers,\r\n\r\nI tried to install pbccs, because it is asked by fc_quiver.py script of FALCON. I followed the instructions here : \r\nhttps://github.com/PacificBiosciences/unanimity/blob/master/doc/INSTALL.md\r\n\r\nSo, I type : \r\n> git clone https://github.com/PacificBiosciences/pitchfork\r\n  cd pitchfork\r\n\r\nBut when I type : \r\n> make pbccs\r\n\r\nI have the following errors : \r\n> Making all in tls\r\nmake[3]: Entering directory `/cm/shared/apps/pitchfork/workspace/libressl-2.2.5/tls'\r\n  CC       tls.lo\r\n  CC       tls_client.lo\r\n  CC       tls_config.lo\r\n  CC       tls_server.lo\r\n  CC       tls_util.lo\r\n  CC       tls_verify.lo\r\n  CCLD     libtls.la\r\nmake[3]: Leaving directory `/cm/shared/apps/pitchfork/workspace/libressl-2.2.5/tls'\r\nMaking all in include\r\nmake[3]: Entering directory `/cm/shared/apps/pitchfork/workspace/libressl-2.2.5/include'\r\nMaking all in openssl\r\nmake[4]: Entering directory `/cm/shared/apps/pitchfork/workspace/libressl-2.2.5/include/openssl'\r\nmake[4]: Nothing to be done for `all'.\r\nmake[4]: Leaving directory `/cm/shared/apps/pitchfork/workspace/libressl-2.2.5/include/openssl'\r\nmake[4]: Entering directory `/cm/shared/apps/pitchfork/workspace/libressl-2.2.5/include'\r\nmake[4]: Nothing to be done for `all-am'.\r\nmake[4]: Leaving directory `/cm/shared/apps/pitchfork/workspace/libressl-2.2.5/include'\r\nmake[3]: Leaving directory `/cm/shared/apps/pitchfork/workspace/libressl-2.2.5/include'\r\nMaking all in apps\r\nmake[3]: Entering directory `/cm/shared/apps/pitchfork/workspace/libressl-2.2.5/apps'\r\n  CC       apps.o\r\nIn file included from apps.c:138:0:\r\napps.h:283:8: error: redefinition of ‘struct option’\r\n struct option {\r\n        ^\r\nIn file included from /usr/include/unistd.h:890:0,\r\n                 from ../include/compat/unistd.h:10,\r\n                 from apps.c:136:\r\n/cm/shared/apps/gcc-5.3_install/gcc-5.3.0/include/getopt.h:82:8: note: originally defined here\r\n struct option\r\n        ^\r\nmake[3]: *** [apps.o] Error 1\r\nmake[3]: Leaving directory `/cm/shared/apps/pitchfork/workspace/libressl-2.2.5/apps'\r\nmake[2]: *** [all-recursive] Error 1\r\nmake[2]: Leaving directory `/cm/shared/apps/pitchfork/workspace/libressl-2.2.5'\r\nmake[1]: *** [/cm/shared/apps/pitchfork/workspace/libressl-2.2.5/ssl/.libs/libssl.so] Error 1\r\nmake[1]: Leaving directory `/cm/shared/apps/pitchfork/ports/thirdparty/libressl'\r\nmake: *** [openssl] Error 2\r\n\r\nAnd I don't understand ... Have you an idea to help me ?\r\n\r\nBest,\r\nAmandine"},"comment":{"url":"https://api.github.com/repos/PacificBiosciences/pitchfork/issues/comments/272512034","html_url":"https://github.com/PacificBiosciences/pitchfork/issues/364#issuecomment-272512034","issue_url":"https://api.github.com/repos/PacificBiosciences/pitchfork/issues/364","id":272512034,"user":{"login":"mhsieh","id":7217130,"avatar_url":"https://avatars.githubusercontent.com/u/7217130?v=3","gravatar_id":"","url":"https://api.github.com/users/mhsieh","html_url":"https://github.com/mhsieh","followers_url":"https://api.github.com/users/mhsieh/followers","following_url":"https://api.github.com/users/mhsieh/following{/other_user}","gists_url":"https://api.github.com/users/mhsieh/gists{/gist_id}","starred_url":"https://api.github.com/users/mhsieh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mhsieh/subscriptions","organizations_url":"https://api.github.com/users/mhsieh/orgs","repos_url":"https://api.github.com/users/mhsieh/repos","events_url":"https://api.github.com/users/mhsieh/events{/privacy}","received_events_url":"https://api.github.com/users/mhsieh/received_events","type":"User","site_admin":false},"created_at":"2017-01-13T18:33:13Z","updated_at":"2017-01-13T18:33:13Z","body":"I am closing this issue now. and the wget fallback issue is created https://github.com/PacificBiosciences/pitchfork/issues/367"}}
{"actor":{"display_login":"mhsieh"}}