{"action":"created","issue":{"url":"https://api.github.com/repos/MikeAxtell/ShortStack/issues/44","repository_url":"https://api.github.com/repos/MikeAxtell/ShortStack","labels_url":"https://api.github.com/repos/MikeAxtell/ShortStack/issues/44/labels{/name}","comments_url":"https://api.github.com/repos/MikeAxtell/ShortStack/issues/44/comments","events_url":"https://api.github.com/repos/MikeAxtell/ShortStack/issues/44/events","html_url":"https://github.com/MikeAxtell/ShortStack/issues/44","id":200629797,"number":44,"title":"inv_file option","user":{"login":"mgalland","id":10114186,"avatar_url":"https://avatars.githubusercontent.com/u/10114186?v=3","gravatar_id":"","url":"https://api.github.com/users/mgalland","html_url":"https://github.com/mgalland","followers_url":"https://api.github.com/users/mgalland/followers","following_url":"https://api.github.com/users/mgalland/following{/other_user}","gists_url":"https://api.github.com/users/mgalland/gists{/gist_id}","starred_url":"https://api.github.com/users/mgalland/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mgalland/subscriptions","organizations_url":"https://api.github.com/users/mgalland/orgs","repos_url":"https://api.github.com/users/mgalland/repos","events_url":"https://api.github.com/users/mgalland/events{/privacy}","received_events_url":"https://api.github.com/users/mgalland/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2017-01-13T13:25:37Z","updated_at":"2017-01-16T14:00:23Z","closed_at":null,"body":"Dear Mike,\r\nFirst of all, thanks for ShortStack. It is a valuable tool in our research project on tomato small RNAs.\r\nI'd like to know if there was a specific reason to drop the \"inv_file\" argument that was present in ShortStack v1.1.0 (Shahid & Axtell 2014). I am now using ShortStack v3.6 and this option seems to have disappeared. \r\nIs there a particular reason for that? Could it be added back in the latest ShortStack version?\r\nOtherwise, I will run the v1.1.0 version with the \"inverted repeats\" files.\r\nMany thanks in advance,\r\nMarc"},"comment":{"url":"https://api.github.com/repos/MikeAxtell/ShortStack/issues/comments/272868631","html_url":"https://github.com/MikeAxtell/ShortStack/issues/44#issuecomment-272868631","issue_url":"https://api.github.com/repos/MikeAxtell/ShortStack/issues/44","id":272868631,"user":{"login":"mgalland","id":10114186,"avatar_url":"https://avatars.githubusercontent.com/u/10114186?v=3","gravatar_id":"","url":"https://api.github.com/users/mgalland","html_url":"https://github.com/mgalland","followers_url":"https://api.github.com/users/mgalland/followers","following_url":"https://api.github.com/users/mgalland/following{/other_user}","gists_url":"https://api.github.com/users/mgalland/gists{/gist_id}","starred_url":"https://api.github.com/users/mgalland/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mgalland/subscriptions","organizations_url":"https://api.github.com/users/mgalland/orgs","repos_url":"https://api.github.com/users/mgalland/repos","events_url":"https://api.github.com/users/mgalland/events{/privacy}","received_events_url":"https://api.github.com/users/mgalland/received_events","type":"User","site_admin":false},"created_at":"2017-01-16T14:00:23Z","updated_at":"2017-01-16T14:00:23Z","body":"Thanks for this nice and clear explanation. I wanted to run the analysis anyway with ShortStack v1.1.0 but I'll leave it for now. \r\nKind regards, \r\nMarc"}}
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