{"action":"created","issue":{"url":"https://api.github.com/repos/MoBiodiv/mobr/issues/62","repository_url":"https://api.github.com/repos/MoBiodiv/mobr","labels_url":"https://api.github.com/repos/MoBiodiv/mobr/issues/62/labels{/name}","comments_url":"https://api.github.com/repos/MoBiodiv/mobr/issues/62/comments","events_url":"https://api.github.com/repos/MoBiodiv/mobr/issues/62/events","html_url":"https://github.com/MoBiodiv/mobr/issues/62","id":166771763,"number":62,"title":"Report overall significance level? ","user":{"login":"dmcglinn","id":1190381,"avatar_url":"https://avatars1.githubusercontent.com/u/1190381?v=3","gravatar_id":"","url":"https://api.github.com/users/dmcglinn","html_url":"https://github.com/dmcglinn","followers_url":"https://api.github.com/users/dmcglinn/followers","following_url":"https://api.github.com/users/dmcglinn/following{/other_user}","gists_url":"https://api.github.com/users/dmcglinn/gists{/gist_id}","starred_url":"https://api.github.com/users/dmcglinn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dmcglinn/subscriptions","organizations_url":"https://api.github.com/users/dmcglinn/orgs","repos_url":"https://api.github.com/users/dmcglinn/repos","events_url":"https://api.github.com/users/dmcglinn/events{/privacy}","received_events_url":"https://api.github.com/users/dmcglinn/received_events","type":"User","site_admin":false},"labels":[{"id":219653342,"url":"https://api.github.com/repos/MoBiodiv/mobr/labels/enhancement","name":"enhancement","color":"84b6eb","default":true}],"state":"open","locked":false,"assignee":{"login":"rueuntal","id":1157182,"avatar_url":"https://avatars1.githubusercontent.com/u/1157182?v=3","gravatar_id":"","url":"https://api.github.com/users/rueuntal","html_url":"https://github.com/rueuntal","followers_url":"https://api.github.com/users/rueuntal/followers","following_url":"https://api.github.com/users/rueuntal/following{/other_user}","gists_url":"https://api.github.com/users/rueuntal/gists{/gist_id}","starred_url":"https://api.github.com/users/rueuntal/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rueuntal/subscriptions","organizations_url":"https://api.github.com/users/rueuntal/orgs","repos_url":"https://api.github.com/users/rueuntal/repos","events_url":"https://api.github.com/users/rueuntal/events{/privacy}","received_events_url":"https://api.github.com/users/rueuntal/received_events","type":"User","site_admin":false},"assignees":[{"login":"rueuntal","id":1157182,"avatar_url":"https://avatars1.githubusercontent.com/u/1157182?v=3","gravatar_id":"","url":"https://api.github.com/users/rueuntal","html_url":"https://github.com/rueuntal","followers_url":"https://api.github.com/users/rueuntal/followers","following_url":"https://api.github.com/users/rueuntal/following{/other_user}","gists_url":"https://api.github.com/users/rueuntal/gists{/gist_id}","starred_url":"https://api.github.com/users/rueuntal/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rueuntal/subscriptions","organizations_url":"https://api.github.com/users/rueuntal/orgs","repos_url":"https://api.github.com/users/rueuntal/repos","events_url":"https://api.github.com/users/rueuntal/events{/privacy}","received_events_url":"https://api.github.com/users/rueuntal/received_events","type":"User","site_admin":false}],"milestone":null,"comments":12,"created_at":"2016-07-21T09:09:07Z","updated_at":"2017-04-18T14:13:47Z","closed_at":null,"body":"John requested that practitioners would like to know an overall significance levels for each stage of the analysis. I'm a bit resistant to this because it de-emphasizes that the answer depends on the scale of the analysis but I can still see the importance. There is a precedent for an overall significance test from the spatial correlogram analyses. Legendre and Fortin (1989) suggest that overall significance can be assessed if there is at least one point that is significant at the level of alpha_prime = alpha / n where alpha is typically 0.05 and n is the number of tests which in our case will be number points along our rarefaction curves we examine. This is the Bonferroni method of correcting for multiple tests. \n"},"comment":{"url":"https://api.github.com/repos/MoBiodiv/mobr/issues/comments/294857714","html_url":"https://github.com/MoBiodiv/mobr/issues/62#issuecomment-294857714","issue_url":"https://api.github.com/repos/MoBiodiv/mobr/issues/62","id":294857714,"user":{"login":"FelixMay","id":15672017,"avatar_url":"https://avatars0.githubusercontent.com/u/15672017?v=3","gravatar_id":"","url":"https://api.github.com/users/FelixMay","html_url":"https://github.com/FelixMay","followers_url":"https://api.github.com/users/FelixMay/followers","following_url":"https://api.github.com/users/FelixMay/following{/other_user}","gists_url":"https://api.github.com/users/FelixMay/gists{/gist_id}","starred_url":"https://api.github.com/users/FelixMay/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/FelixMay/subscriptions","organizations_url":"https://api.github.com/users/FelixMay/orgs","repos_url":"https://api.github.com/users/FelixMay/repos","events_url":"https://api.github.com/users/FelixMay/events{/privacy}","received_events_url":"https://api.github.com/users/FelixMay/received_events","type":"User","site_admin":false},"created_at":"2017-04-18T14:13:47Z","updated_at":"2017-04-18T14:13:47Z","body":"Dear mobr-team,\r\nas Nick I like the compromise that Xiao suggested! It is a while ago that I read the Loosmore paper, but as far as I remember it should not be that difficult to implement their approach for our case. I also guess that it is easier to code it ourselves than adapting the spatstat::dclf.test function. When necessary, we can copy-paste and adapt their source code. @rueuntal let me know when you need help with the implementation, but I guess you will be faster than me, because you much better know the mobr data structures "}}
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