{"action":"created","issue":{"url":"https://api.github.com/repos/data-refinery/data_refinery/issues/9","repository_url":"https://api.github.com/repos/data-refinery/data_refinery","labels_url":"https://api.github.com/repos/data-refinery/data_refinery/issues/9/labels{/name}","comments_url":"https://api.github.com/repos/data-refinery/data_refinery/issues/9/comments","events_url":"https://api.github.com/repos/data-refinery/data_refinery/issues/9/events","html_url":"https://github.com/data-refinery/data_refinery/pull/9","id":223086893,"number":9,"title":"First processor and the configuration to support it","user":{"login":"kurtwheeler","id":4026833,"avatar_url":"https://avatars2.githubusercontent.com/u/4026833?v=3","gravatar_id":"","url":"https://api.github.com/users/kurtwheeler","html_url":"https://github.com/kurtwheeler","followers_url":"https://api.github.com/users/kurtwheeler/followers","following_url":"https://api.github.com/users/kurtwheeler/following{/other_user}","gists_url":"https://api.github.com/users/kurtwheeler/gists{/gist_id}","starred_url":"https://api.github.com/users/kurtwheeler/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kurtwheeler/subscriptions","organizations_url":"https://api.github.com/users/kurtwheeler/orgs","repos_url":"https://api.github.com/users/kurtwheeler/repos","events_url":"https://api.github.com/users/kurtwheeler/events{/privacy}","received_events_url":"https://api.github.com/users/kurtwheeler/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"dongbohu","id":15133253,"avatar_url":"https://avatars0.githubusercontent.com/u/15133253?v=3","gravatar_id":"","url":"https://api.github.com/users/dongbohu","html_url":"https://github.com/dongbohu","followers_url":"https://api.github.com/users/dongbohu/followers","following_url":"https://api.github.com/users/dongbohu/following{/other_user}","gists_url":"https://api.github.com/users/dongbohu/gists{/gist_id}","starred_url":"https://api.github.com/users/dongbohu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dongbohu/subscriptions","organizations_url":"https://api.github.com/users/dongbohu/orgs","repos_url":"https://api.github.com/users/dongbohu/repos","events_url":"https://api.github.com/users/dongbohu/events{/privacy}","received_events_url":"https://api.github.com/users/dongbohu/received_events","type":"User","site_admin":false},"assignees":[{"login":"dongbohu","id":15133253,"avatar_url":"https://avatars0.githubusercontent.com/u/15133253?v=3","gravatar_id":"","url":"https://api.github.com/users/dongbohu","html_url":"https://github.com/dongbohu","followers_url":"https://api.github.com/users/dongbohu/followers","following_url":"https://api.github.com/users/dongbohu/following{/other_user}","gists_url":"https://api.github.com/users/dongbohu/gists{/gist_id}","starred_url":"https://api.github.com/users/dongbohu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dongbohu/subscriptions","organizations_url":"https://api.github.com/users/dongbohu/orgs","repos_url":"https://api.github.com/users/dongbohu/repos","events_url":"https://api.github.com/users/dongbohu/events{/privacy}","received_events_url":"https://api.github.com/users/dongbohu/received_events","type":"User","site_admin":false}],"milestone":null,"comments":2,"created_at":"2017-04-20T14:29:36Z","updated_at":"2017-05-02T19:40:57Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/data-refinery/data_refinery/pulls/9","html_url":"https://github.com/data-refinery/data_refinery/pull/9","diff_url":"https://github.com/data-refinery/data_refinery/pull/9.diff","patch_url":"https://github.com/data-refinery/data_refinery/pull/9.patch"},"body":"This PR adds our first processor. It's still in a nascent state, however what data a processor will and will not work for will require additional investigation. However it is capable of processing at least SOME data from Array Express, which is good enough to be a POC.\r\n\r\nI think I have also come up with a good way of dealing with R dependencies in this PR. Basically it comes down to putting any R package we want to use into Conda and managing dependencies entirely through Conda (both R and python).\r\n\r\nSo in order to support all the R dependencies required for this processor I have opened these PRs:\r\n  - https://github.com/bioconda/bioconda-recipes/pull/4468\r\n  - https://github.com/greenelab/conda-channel/pull/1\r\n\r\nWhich resulted in this conda channel being created and populated: https://anaconda.org/greenelab"},"comment":{"url":"https://api.github.com/repos/data-refinery/data_refinery/issues/comments/298739333","html_url":"https://github.com/data-refinery/data_refinery/pull/9#issuecomment-298739333","issue_url":"https://api.github.com/repos/data-refinery/data_refinery/issues/9","id":298739333,"user":{"login":"kurtwheeler","id":4026833,"avatar_url":"https://avatars2.githubusercontent.com/u/4026833?v=3","gravatar_id":"","url":"https://api.github.com/users/kurtwheeler","html_url":"https://github.com/kurtwheeler","followers_url":"https://api.github.com/users/kurtwheeler/followers","following_url":"https://api.github.com/users/kurtwheeler/following{/other_user}","gists_url":"https://api.github.com/users/kurtwheeler/gists{/gist_id}","starred_url":"https://api.github.com/users/kurtwheeler/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kurtwheeler/subscriptions","organizations_url":"https://api.github.com/users/kurtwheeler/orgs","repos_url":"https://api.github.com/users/kurtwheeler/repos","events_url":"https://api.github.com/users/kurtwheeler/events{/privacy}","received_events_url":"https://api.github.com/users/kurtwheeler/received_events","type":"User","site_admin":false},"created_at":"2017-05-02T19:40:57Z","updated_at":"2017-05-02T19:40:57Z","body":"Ok @dongbohu I think this should be good to go at this point. What do you think?"}}
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