{"action":"created","issue":{"url":"https://api.github.com/repos/CGATOxford/cgat/issues/303","repository_url":"https://api.github.com/repos/CGATOxford/cgat","labels_url":"https://api.github.com/repos/CGATOxford/cgat/issues/303/labels{/name}","comments_url":"https://api.github.com/repos/CGATOxford/cgat/issues/303/comments","events_url":"https://api.github.com/repos/CGATOxford/cgat/issues/303/events","html_url":"https://github.com/CGATOxford/cgat/pull/303","id":199886744,"number":303,"title":"Ac subsetbam","user":{"login":"Acribbs","id":12068583,"avatar_url":"https://avatars.githubusercontent.com/u/12068583?v=3","gravatar_id":"","url":"https://api.github.com/users/Acribbs","html_url":"https://github.com/Acribbs","followers_url":"https://api.github.com/users/Acribbs/followers","following_url":"https://api.github.com/users/Acribbs/following{/other_user}","gists_url":"https://api.github.com/users/Acribbs/gists{/gist_id}","starred_url":"https://api.github.com/users/Acribbs/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Acribbs/subscriptions","organizations_url":"https://api.github.com/users/Acribbs/orgs","repos_url":"https://api.github.com/users/Acribbs/repos","events_url":"https://api.github.com/users/Acribbs/events{/privacy}","received_events_url":"https://api.github.com/users/Acribbs/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2017-01-10T17:39:38Z","updated_at":"2017-01-11T12:02:13Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/CGATOxford/cgat/pulls/303","html_url":"https://github.com/CGATOxford/cgat/pull/303","diff_url":"https://github.com/CGATOxford/cgat/pull/303.diff","patch_url":"https://github.com/CGATOxford/cgat/pull/303.patch"},"body":"Added downsampling function for both paired end and single end. Andreas checked function before christmas and suggested that because of the way dictionaries are called in python 3 the testing for this cannot be performed on py3 because the dictionary order is random. Therefore, testing is only performed for downsampling in python 2. This is a short term workaround until we can think of a way to test properly in py3. "},"comment":{"url":"https://api.github.com/repos/CGATOxford/cgat/issues/comments/271851565","html_url":"https://github.com/CGATOxford/cgat/pull/303#issuecomment-271851565","issue_url":"https://api.github.com/repos/CGATOxford/cgat/issues/303","id":271851565,"user":{"login":"Acribbs","id":12068583,"avatar_url":"https://avatars.githubusercontent.com/u/12068583?v=3","gravatar_id":"","url":"https://api.github.com/users/Acribbs","html_url":"https://github.com/Acribbs","followers_url":"https://api.github.com/users/Acribbs/followers","following_url":"https://api.github.com/users/Acribbs/following{/other_user}","gists_url":"https://api.github.com/users/Acribbs/gists{/gist_id}","starred_url":"https://api.github.com/users/Acribbs/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Acribbs/subscriptions","organizations_url":"https://api.github.com/users/Acribbs/orgs","repos_url":"https://api.github.com/users/Acribbs/repos","events_url":"https://api.github.com/users/Acribbs/events{/privacy}","received_events_url":"https://api.github.com/users/Acribbs/received_events","type":"User","site_admin":false},"created_at":"2017-01-11T12:02:13Z","updated_at":"2017-01-11T12:02:13Z","body":"Hi @AndreasHeger or @sebastian-luna-valero , I think this may solve the problem for py3 tests. However I can't test it because since the way we call scripts now is chat bam2bam, and not python bam2bam.py, I can not pass the -R option to python. Is there a pay of passing this option to an EASY-INSTALL-ENTRY-SCRIPT? "}}
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