{"action":"created","issue":{"url":"https://api.github.com/repos/shankar1729/jdftx/issues/5","repository_url":"https://api.github.com/repos/shankar1729/jdftx","labels_url":"https://api.github.com/repos/shankar1729/jdftx/issues/5/labels{/name}","comments_url":"https://api.github.com/repos/shankar1729/jdftx/issues/5/comments","events_url":"https://api.github.com/repos/shankar1729/jdftx/issues/5/events","html_url":"https://github.com/shankar1729/jdftx/issues/5","id":250148202,"number":5,"title":"<< compilation OK, but test fail >>","user":{"login":"icamps","id":13273938,"avatar_url":"https://avatars1.githubusercontent.com/u/13273938?v=4","gravatar_id":"","url":"https://api.github.com/users/icamps","html_url":"https://github.com/icamps","followers_url":"https://api.github.com/users/icamps/followers","following_url":"https://api.github.com/users/icamps/following{/other_user}","gists_url":"https://api.github.com/users/icamps/gists{/gist_id}","starred_url":"https://api.github.com/users/icamps/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/icamps/subscriptions","organizations_url":"https://api.github.com/users/icamps/orgs","repos_url":"https://api.github.com/users/icamps/repos","events_url":"https://api.github.com/users/icamps/events{/privacy}","received_events_url":"https://api.github.com/users/icamps/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2017-08-14T20:42:40Z","updated_at":"2017-08-15T00:35:05Z","closed_at":null,"body":"Hello,\r\n\r\nI successfully compiled JDFTx.\r\n\r\nRunning `make test`, I got:\r\n```\r\nRunning tests...\r\nTest project /root/Downloads/JDFTx/build\r\n      Start  1: openShell\r\n 1/10 Test  #1: openShell ........................***Failed    0.18 sec\r\n      Start  2: vibrations\r\n 2/10 Test  #2: vibrations .......................***Failed    0.17 sec\r\n      Start  3: moleculeSolvation\r\n 3/10 Test  #3: moleculeSolvation ................***Failed    0.66 sec\r\n      Start  4: ionSolvation\r\n 4/10 Test  #4: ionSolvation .....................***Failed    0.32 sec\r\n      Start  5: latticeOpt\r\n 5/10 Test  #5: latticeOpt .......................***Failed    1.16 sec\r\n      Start  6: metalBulk\r\n 6/10 Test  #6: metalBulk ........................***Failed    1.46 sec\r\n      Start  7: plusU\r\n 7/10 Test  #7: plusU ............................***Failed    1.36 sec\r\n      Start  8: spinOrbit\r\n 8/10 Test  #8: spinOrbit ........................***Failed    1.34 sec\r\n      Start  9: graphene\r\n 9/10 Test  #9: graphene .........................***Failed    0.48 sec\r\n      Start 10: metalSurface\r\n10/10 Test #10: metalSurface .....................***Failed    1.28 sec\r\n0% tests passed, 10 tests failed out of 10\r\nTotal Test time (real) =   8.42 sec\r\nThe following tests FAILED:\r\n          1 - openShell (Failed)\r\n          2 - vibrations (Failed)\r\n          3 - moleculeSolvation (Failed)\r\n          4 - ionSolvation (Failed)\r\n          5 - latticeOpt (Failed)\r\n          6 - metalBulk (Failed)\r\n          7 - plusU (Failed)\r\n          8 - spinOrbit (Failed)\r\n          9 - graphene (Failed)\r\n         10 - metalSurface (Failed)\r\nErrors while running CTest\r\nMakefile:61: recipe for target 'test' failed\r\nmake: *** [test] Error 8\r\n```\r\nRunning `./jdftx` to check for specific error messages return:\r\n```\r\n*************** JDFTx 1.3.1  The playground for joint density functional theory ****************\r\n\r\nStart date and time: Mon Aug 14 17:36:59 2017\r\nRunning on hosts (process indices):  lamodel ( 0 )\r\nExecutable ./jdftx with empty command-line (run with -h or --help for command-line options).\r\nMaximum cpu threads by process: 4\r\nRun totals: 1 processes, 4 threads, 0 GPUs\r\nWaiting for commands from stdin (end input with EOF (Ctrl+D)):\r\n```\r\nWhich I think is ok.\r\n\r\nRunning `ldd ./jdftx`, I got:\r\n ```\r\nlinux-vdso.so.1 (0x00007ffc8eff9000)\r\n        libjdftx.so => /root/Downloads/JDFTx/build/libjdftx.so (0x00002b70b95f2000)\r\n        libmpicxx.so.12 => /software/intel/MPI/compilers_and_libraries_2017.1.132/linux/mpi/intel64/lib/libmpicxx.so.12 (0x00002b70ba15b000)\r\n        libmpifort.so.12 => /software/intel/MPI/compilers_and_libraries_2017.1.132/linux/mpi/intel64/lib/libmpifort.so.12 (0x00002b70ba37c000)\r\n        libmpi.so.12 => /software/intel/MPI/compilers_and_libraries_2017.1.132/linux/mpi/intel64/lib/libmpi.so.12 (0x00002b70ba725000)\r\n        libdl.so.2 => /lib64/libdl.so.2 (0x00002b70bb465000)\r\n        librt.so.1 => /lib64/librt.so.1 (0x00002b70bb66a000)\r\n        libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b70bb872000)\r\n        libgsl.so.0 => /usr/lib64/libgsl.so.0 (0x00002b70bba8f000)\r\n        libfftw3_threads.so.3 => /usr/lib64/libfftw3_threads.so.3 (0x00002b70bbec3000)\r\n        libfftw3.so.3 => /usr/lib64/libfftw3.so.3 (0x00002b70bc0ca000)\r\n        libmkl_intel_lp64.so => /software/intel/compiladores/composer_xe_2015.1.133/mkl/lib/intel64/libmkl_intel_lp64.so (0x00002b70bc4c7000)\r\n        libmkl_intel_thread.so => /software/intel/compiladores/composer_xe_2015.1.133/mkl/lib/intel64/libmkl_intel_thread.so (0x00002b70bcddb000)\r\n        libmkl_core.so => /software/intel/compiladores/composer_xe_2015.1.133/mkl/lib/intel64/libmkl_core.so (0x00002b70be176000)\r\n        libiomp5.so => /software/intel/compiladores/composer_xe_2015.1.133/compiler/lib/intel64/libiomp5.so (0x00002b70bfccf000)\r\n        libm.so.6 => /lib64/libm.so.6 (0x00002b70c0005000)\r\n        libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00002b70c0302000)\r\n        libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00002b70c068b000)\r\n        libc.so.6 => /lib64/libc.so.6 (0x00002b70c08a3000)\r\n        libimf.so => /software/intel/compiladores/composer_xe_2015.1.133/compiler/lib/intel64/libimf.so (0x00002b70c0c46000)\r\n        libsvml.so => /software/intel/compiladores/composer_xe_2015.1.133/compiler/lib/intel64/libsvml.so (0x00002b70c1101000)\r\n        libirng.so => /software/intel/compiladores/composer_xe_2015.1.133/compiler/lib/intel64/libirng.so (0x00002b70c1fe0000)\r\n        libintlc.so.5 => /software/intel/compiladores/composer_xe_2015.1.133/compiler/lib/intel64/libintlc.so.5 (0x00002b70c21e7000)\r\n        /lib64/ld-linux-x86-64.so.2 (0x000055f9ebb14000)\r\n```\r\n\r\nThat also looks ok to me.\r\n\r\nWhat I am missing?"},"comment":{"url":"https://api.github.com/repos/shankar1729/jdftx/issues/comments/322346308","html_url":"https://github.com/shankar1729/jdftx/issues/5#issuecomment-322346308","issue_url":"https://api.github.com/repos/shankar1729/jdftx/issues/5","id":322346308,"user":{"login":"shankar1729","id":29434915,"avatar_url":"https://avatars1.githubusercontent.com/u/29434915?v=4","gravatar_id":"","url":"https://api.github.com/users/shankar1729","html_url":"https://github.com/shankar1729","followers_url":"https://api.github.com/users/shankar1729/followers","following_url":"https://api.github.com/users/shankar1729/following{/other_user}","gists_url":"https://api.github.com/users/shankar1729/gists{/gist_id}","starred_url":"https://api.github.com/users/shankar1729/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/shankar1729/subscriptions","organizations_url":"https://api.github.com/users/shankar1729/orgs","repos_url":"https://api.github.com/users/shankar1729/repos","events_url":"https://api.github.com/users/shankar1729/events{/privacy}","received_events_url":"https://api.github.com/users/shankar1729/received_events","type":"User","site_admin":false},"created_at":"2017-08-15T00:35:05Z","updated_at":"2017-08-15T00:35:05Z","body":"\"make test\" requires write permissions in the build directory.  Looking at your paths, did you perhaps compile as root and then try to run \"make test\" as normal user?"}}
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