{"action":"created","issue":{"url":"https://api.github.com/repos/pacificclimate/Rudunits2/issues/17","repository_url":"https://api.github.com/repos/pacificclimate/Rudunits2","labels_url":"https://api.github.com/repos/pacificclimate/Rudunits2/issues/17/labels{/name}","comments_url":"https://api.github.com/repos/pacificclimate/Rudunits2/issues/17/comments","events_url":"https://api.github.com/repos/pacificclimate/Rudunits2/issues/17/events","html_url":"https://github.com/pacificclimate/Rudunits2/issues/17","id":257031572,"number":17,"title":"Undefined symbol: `ut_ignore` registration issue","user":{"login":"wittenberg","id":30164189,"avatar_url":"https://avatars2.githubusercontent.com/u/30164189?v=4","gravatar_id":"","url":"https://api.github.com/users/wittenberg","html_url":"https://github.com/wittenberg","followers_url":"https://api.github.com/users/wittenberg/followers","following_url":"https://api.github.com/users/wittenberg/following{/other_user}","gists_url":"https://api.github.com/users/wittenberg/gists{/gist_id}","starred_url":"https://api.github.com/users/wittenberg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wittenberg/subscriptions","organizations_url":"https://api.github.com/users/wittenberg/orgs","repos_url":"https://api.github.com/users/wittenberg/repos","events_url":"https://api.github.com/users/wittenberg/events{/privacy}","received_events_url":"https://api.github.com/users/wittenberg/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2017-09-12T12:50:49Z","updated_at":"2017-09-14T13:38:03Z","closed_at":null,"author_association":"NONE","body":"I am getting an error during installation of uduntis2 under R 3.4.1. An undefined symbol: `ut_ignore` in file ‘udunits2/libs/udunits2.so’: Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’\r\n\r\n```\r\ninstall.packages(\"udunits2\")\r\nInstalling package into ‘/home/R/x86_64-pc-linux-gnu-library/3.4’\r\n(as ‘lib’ is unspecified)\r\n--- Please select a CRAN mirror for use in this session ---\r\ntrying URL 'https://cran.uni-muenster.de/src/contrib/udunits2_0.13.tar.gz'\r\nContent type 'application/x-gzip' length 67182 bytes (65 KB)\r\n==================================================\r\ndownloaded 65 KB\r\n\r\n* installing *source* package ‘udunits2’ ...\r\n** package ‘udunits2’ successfully unpacked and MD5 sums checked\r\nchecking for gcc... gcc -std=gnu99\r\nchecking whether the C compiler works... yes\r\nchecking for C compiler default output file name... a.out\r\nchecking for suffix of executables... \r\nchecking whether we are cross compiling... no\r\nchecking for suffix of object files... o\r\nchecking whether we are using the GNU C compiler... yes\r\nchecking whether gcc -std=gnu99 accepts -g... yes\r\nchecking for gcc -std=gnu99 option to accept ISO C89... none needed\r\nchecking for XML_ParserCreate in -lexpat... yes\r\nchecking how to run the C preprocessor... gcc -std=gnu99 -E\r\nchecking for grep that handles long lines and -e... /bin/grep\r\nchecking for egrep... /bin/grep -E\r\nchecking for ANSI C header files... yes\r\nchecking for sys/types.h... yes\r\nchecking for sys/stat.h... yes\r\nchecking for stdlib.h... yes\r\nchecking for string.h... yes\r\nchecking for memory.h... yes\r\nchecking for strings.h... yes\r\nchecking for inttypes.h... yes\r\nchecking for stdint.h... yes\r\nchecking for unistd.h... yes\r\nchecking udunits2.h usability... yes\r\nchecking udunits2.h presence... yes\r\nchecking for udunits2.h... yes\r\nchecking for ut_read_xml in -ludunits2... yes\r\nconfigure: creating ./config.status\r\nconfig.status: creating src/Makevars\r\n** libs\r\ngcc -std=gnu99 -I/usr/share/R/include -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/home/jranke/git/r-backports/stretch/r-base-3.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c udunits2_R.c -o udunits2_R.o\r\ngcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o udunits2.so udunits2_R.o -fopenmp -lgomp -L/usr/lib/R/lib -lR\r\ninstalling to /home/R/x86_64-pc-linux-gnu-library/3.4/udunits2/libs\r\n** R\r\n** inst\r\n** preparing package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded\r\nError: package or namespace load failed for ‘udunits2’ in dyn.load(file, DLLpath = DLLpath, ...):\r\n unable to load shared object '/home/R/x86_64-pc-linux-gnu-library/3.4/udunits2/libs/udunits2.so':\r\n  /home/R/x86_64-pc-linux-gnu-library/3.4/udunits2/libs/udunits2.so: undefined symbol: ut_ignore\r\nError: loading failed\r\nExecution halted\r\nERROR: loading failed\r\n* removing ‘/home/R/x86_64-pc-linux-gnu-library/3.4/udunits2’\r\n\r\nThe downloaded source packages are in\r\n\t‘/tmp/RtmprikgzO/downloaded_packages’\r\nWarning message:\r\nIn install.packages(\"udunits2\") :\r\n  installation of package ‘udunits2’ had non-zero exit status\r\n\r\n```\r\n```\r\nsessionInfo()\r\nR version 3.4.1 (2017-06-30)\r\nPlatform: x86_64-pc-linux-gnu (64-bit)\r\nRunning under: Debian GNU/Linux buster/sid\r\n\r\nMatrix products: default\r\nBLAS: /usr/lib/openblas-base/libblas.so.3\r\nLAPACK: /usr/lib/libopenblasp-r0.2.20.so\r\n\r\nlocale:\r\n [1] LC_CTYPE=en_GB.utf8       LC_NUMERIC=C             \r\n [3] LC_TIME=en_GB.utf8        LC_COLLATE=en_GB.utf8    \r\n [5] LC_MONETARY=en_GB.utf8    LC_MESSAGES=en_GB.utf8   \r\n [7] LC_PAPER=en_GB.utf8       LC_NAME=C                \r\n [9] LC_ADDRESS=C              LC_TELEPHONE=C           \r\n[11] LC_MEASUREMENT=en_GB.utf8 LC_IDENTIFICATION=C      \r\n\r\nattached base packages:\r\n[1] stats     graphics  grDevices utils     datasets  methods   base     \r\n\r\nloaded via a namespace (and not attached):\r\n[1] compiler_3.4.1\r\n```\r\n"},"comment":{"url":"https://api.github.com/repos/pacificclimate/Rudunits2/issues/comments/329484346","html_url":"https://github.com/pacificclimate/Rudunits2/issues/17#issuecomment-329484346","issue_url":"https://api.github.com/repos/pacificclimate/Rudunits2/issues/17","id":329484346,"user":{"login":"wittenberg","id":30164189,"avatar_url":"https://avatars2.githubusercontent.com/u/30164189?v=4","gravatar_id":"","url":"https://api.github.com/users/wittenberg","html_url":"https://github.com/wittenberg","followers_url":"https://api.github.com/users/wittenberg/followers","following_url":"https://api.github.com/users/wittenberg/following{/other_user}","gists_url":"https://api.github.com/users/wittenberg/gists{/gist_id}","starred_url":"https://api.github.com/users/wittenberg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wittenberg/subscriptions","organizations_url":"https://api.github.com/users/wittenberg/orgs","repos_url":"https://api.github.com/users/wittenberg/repos","events_url":"https://api.github.com/users/wittenberg/events{/privacy}","received_events_url":"https://api.github.com/users/wittenberg/received_events","type":"User","site_admin":false},"created_at":"2017-09-14T13:38:03Z","updated_at":"2017-09-14T13:38:03Z","author_association":"NONE","body":"Currently, I have `libudunits2-0` (version 2.2.25-2) installed."}}
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