{"action":"created","issue":{"url":"https://api.github.com/repos/paalka/SparkAligner/issues/1","repository_url":"https://api.github.com/repos/paalka/SparkAligner","labels_url":"https://api.github.com/repos/paalka/SparkAligner/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/paalka/SparkAligner/issues/1/comments","events_url":"https://api.github.com/repos/paalka/SparkAligner/issues/1/events","html_url":"https://github.com/paalka/SparkAligner/issues/1","id":210468866,"number":1,"title":"How do I use bwa -t 32 as an extra option for BWA","user":{"login":"tushu1232","id":10808164,"avatar_url":"https://avatars0.githubusercontent.com/u/10808164?v=3","gravatar_id":"","url":"https://api.github.com/users/tushu1232","html_url":"https://github.com/tushu1232","followers_url":"https://api.github.com/users/tushu1232/followers","following_url":"https://api.github.com/users/tushu1232/following{/other_user}","gists_url":"https://api.github.com/users/tushu1232/gists{/gist_id}","starred_url":"https://api.github.com/users/tushu1232/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tushu1232/subscriptions","organizations_url":"https://api.github.com/users/tushu1232/orgs","repos_url":"https://api.github.com/users/tushu1232/repos","events_url":"https://api.github.com/users/tushu1232/events{/privacy}","received_events_url":"https://api.github.com/users/tushu1232/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2017-02-27T12:21:34Z","updated_at":"2017-02-28T20:36:06Z","closed_at":null,"body":"I need to increase the number of threads for BWA by specifying it in -t for bwa\r\nPlease suggest the flag or create a help file"},"comment":{"url":"https://api.github.com/repos/paalka/SparkAligner/issues/comments/283153211","html_url":"https://github.com/paalka/SparkAligner/issues/1#issuecomment-283153211","issue_url":"https://api.github.com/repos/paalka/SparkAligner/issues/1","id":283153211,"user":{"login":"tushu1232","id":10808164,"avatar_url":"https://avatars0.githubusercontent.com/u/10808164?v=3","gravatar_id":"","url":"https://api.github.com/users/tushu1232","html_url":"https://github.com/tushu1232","followers_url":"https://api.github.com/users/tushu1232/followers","following_url":"https://api.github.com/users/tushu1232/following{/other_user}","gists_url":"https://api.github.com/users/tushu1232/gists{/gist_id}","starred_url":"https://api.github.com/users/tushu1232/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tushu1232/subscriptions","organizations_url":"https://api.github.com/users/tushu1232/orgs","repos_url":"https://api.github.com/users/tushu1232/repos","events_url":"https://api.github.com/users/tushu1232/events{/privacy}","received_events_url":"https://api.github.com/users/tushu1232/received_events","type":"User","site_admin":false},"created_at":"2017-02-28T20:36:06Z","updated_at":"2017-02-28T20:36:06Z","body":"@paalka I tried it and -bwaArgs \"-t 32\" doesn't work, bwamem doesn't fire up and spark job fails to execute.Could you please fix it or provide a patch.\r\nThanks"}}
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