{"action":"created","comment":{"url":"https://api.github.com/repos/metoppv/improver/pulls/comments/122487206","pull_request_review_id":44611953,"id":122487206,"diff_hunk":"@@ -0,0 +1,103 @@\n+#!/usr/bin/env python\n+# -*- coding: utf-8 -*-\n+# -----------------------------------------------------------------------------\n+# (C) British Crown Copyright 2017 Met Office.\n+# All rights reserved.\n+#\n+# Redistribution and use in source and binary forms, with or without\n+# modification, are permitted provided that the following conditions are met:\n+#\n+# * Redistributions of source code must retain the above copyright notice, this\n+#   list of conditions and the following disclaimer.\n+#\n+# * Redistributions in binary form must reproduce the above copyright notice,\n+#   this list of conditions and the following disclaimer in the documentation\n+#   and/or other materials provided with the distribution.\n+#\n+# * Neither the name of the copyright holder nor the names of its\n+#   contributors may be used to endorse or promote products derived from\n+#   this software without specific prior written permission.\n+#\n+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS IS\"\n+# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE\n+# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE\n+# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE\n+# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR\n+# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF\n+# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS\n+# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN\n+# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)\n+# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE\n+# POSSIBILITY OF SUCH DAMAGE.\n+\"\"\"Script to run wind downscaling.\"\"\"\n+\n+import argparse\n+\n+import iris\n+\n+from improver import wind_downscaling\n+\n+\n+def main():\n+    \"\"\"Load in arguments and get going.\"\"\"\n+    parser = argparse.ArgumentParser(\n+        description='Run wind downscaling to apply roughness correction and'\n+                    ' height correction to wind fields (as described in'\n+                    ' Howard and Clark [2007]).')\n+    parser.add_argument('wind_speed_filepath', metavar='WIND_SPEED_FILE',\n+                        help='Location of the wind speed on standard grid'\n+                             ' file. Any units can be supplied.')\n+    parser.add_argument('silhouette_roughness_filepath', metavar='AOS_FILE',\n+                        help='Location of model silhouette roughness file. '\n+                             'Units of field: dimensionless')\n+    parser.add_argument('sigma_filepath', metavar='SIGMA_FILE',\n+                        help='Location of standard deviation of model '\n+                             'orography height file. Units of field: m')\n+    parser.add_argument('target_orog_filepath',\n+                        metavar='TARGET_OROGRAPHY_FILE',\n+                        help='Location of target orography file to downscale'\n+                             ' fields to.'\n+                             'Units of field: m')\n+    parser.add_argument('standard_orog_filepath',\n+                        metavar='STANDARD_OROGRAPHY_FILE',\n+                        help='Location of orography on standard grid file '\n+                             '(interpolated model orography.'\n+                             ' Units of field: m')\n+    parser.add_argument('model_resolution', metavar='MODEL_RESOLUTION',\n+                        help='Original resolution of model orography (before'\n+                             ' interpolation to standard grid).'\n+                             ' Units of field: m')\n+    parser.add_argument('output_filepath', metavar='OUTPUT_FILE',\n+                        help='The output path for the processed NetCDF')\n+    parser.add_argument('--height_levels_filepath', metavar='HEIGHT_LEVELS',\n+                        help='Location of file containing height levels '\n+                             'coincident with wind speed field.')\n+    parser.add_argument('--veg_roughness_filepath',\n+                        metavar='VEGETATIVE_ROUGHNESS_LENGTH',\n+                        help='Location of vegetative roughness length file.'\n+                             ' Units of field: m')\n+    args = parser.parse_args()\n+    wind_speed = iris.load_cube(args.wind_speed_filepath)\n+    silhouette_roughness_filepath = iris.load_cube(\n+        args.silhouette_roughness_filepath)\n+    sigma = iris.load_cube(args.sigma_filepath)\n+    target_orog = iris.load_cube(args.target_orog_filepath)\n+    standard_orog = iris.load_cube(args.standard_orog_filepath)\n+    if args.height_levels_filepath:\n+        height_levels = iris.load_cube(args.height_levels_filepath)\n+    else:\n+        height_levels = None\n+    if args.veg_roughness_filepath:\n+        veg_roughness_cube = iris.load_cube(args.veg_roughness_filepath)","path":"bin/improver-wind-downscaling","position":92,"original_position":91,"commit_id":"090ecc33c6fa553d591b59648f126246ff9cf22a","original_commit_id":"3b66cc3206334bb272d3ad8c79675c9c47ef0df0","user":{"login":"meabhnicguidhir","id":28393790,"avatar_url":"https://avatars0.githubusercontent.com/u/28393790?v=3","gravatar_id":"","url":"https://api.github.com/users/meabhnicguidhir","html_url":"https://github.com/meabhnicguidhir","followers_url":"https://api.github.com/users/meabhnicguidhir/followers","following_url":"https://api.github.com/users/meabhnicguidhir/following{/other_user}","gists_url":"https://api.github.com/users/meabhnicguidhir/gists{/gist_id}","starred_url":"https://api.github.com/users/meabhnicguidhir/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/meabhnicguidhir/subscriptions","organizations_url":"https://api.github.com/users/meabhnicguidhir/orgs","repos_url":"https://api.github.com/users/meabhnicguidhir/repos","events_url":"https://api.github.com/users/meabhnicguidhir/events{/privacy}","received_events_url":"https://api.github.com/users/meabhnicguidhir/received_events","type":"User","site_admin":false},"body":":smile_cat: ","created_at":"2017-06-16T16:57:33Z","updated_at":"2017-06-16T16:57:33Z","html_url":"https://github.com/metoppv/improver/pull/116#discussion_r122487206","pull_request_url":"https://api.github.com/repos/metoppv/improver/pulls/116","_links":{"self":{"href":"https://api.github.com/repos/metoppv/improver/pulls/comments/122487206"},"html":{"href":"https://github.com/metoppv/improver/pull/116#discussion_r122487206"},"pull_request":{"href":"https://api.github.com/repos/metoppv/improver/pulls/116"}}},"pull_request":{"url":"https://api.github.com/repos/metoppv/improver/pulls/116","id":125602825,"html_url":"https://github.com/metoppv/improver/pull/116","diff_url":"https://github.com/metoppv/improver/pull/116.diff","patch_url":"https://github.com/metoppv/improver/pull/116.patch","issue_url":"https://api.github.com/repos/metoppv/improver/issues/116","number":116,"state":"open","locked":false,"title":"Wind Downscaling CLI","user":{"login":"meabhnicguidhir","id":28393790,"avatar_url":"https://avatars0.githubusercontent.com/u/28393790?v=3","gravatar_id":"","url":"https://api.github.com/users/meabhnicguidhir","html_url":"https://github.com/meabhnicguidhir","followers_url":"https://api.github.com/users/meabhnicguidhir/followers","following_url":"https://api.github.com/users/meabhnicguidhir/following{/other_user}","gists_url":"https://api.github.com/users/meabhnicguidhir/gists{/gist_id}","starred_url":"https://api.github.com/users/meabhnicguidhir/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/meabhnicguidhir/subscriptions","organizations_url":"https://api.github.com/users/meabhnicguidhir/orgs","repos_url":"https://api.github.com/users/meabhnicguidhir/repos","events_url":"https://api.github.com/users/meabhnicguidhir/events{/privacy}","received_events_url":"https://api.github.com/users/meabhnicguidhir/received_events","type":"User","site_admin":false},"body":"Issue #67 \r\n- CLI written\r\n- sample input and known good output files created for bats tests.\r\n- Bats tests for: no arguments, -help option, acceptance test with all compulsory arguments, acceptance test with -vegetation cover optional field.\r\n\r\nNotes:\r\n- currently target orography = standard orography. When target orography is defined in the future, acceptance tests will have to be updated.\r\n- some technical debt notes were made on the original issue ( #67 ). These should be addressed in technical debt issues.\r\n\r\nTesting:\r\n - [x] Ran tests and they passed OK\r\n - [x] Added new tests for the new feature(s)","created_at":"2017-06-14T13:59:19Z","updated_at":"2017-06-16T16:57:33Z","closed_at":null,"merged_at":null,"merge_commit_sha":"6c0d9b98c66d70b12fd48314dbf2a7890961a97a","assignee":{"login":"gavinevans","id":26933341,"avatar_url":"https://avatars0.githubusercontent.com/u/26933341?v=3","gravatar_id":"","url":"https://api.github.com/users/gavinevans","html_url":"https://github.com/gavinevans","followers_url":"https://api.github.com/users/gavinevans/followers","following_url":"https://api.github.com/users/gavinevans/following{/other_user}","gists_url":"https://api.github.com/users/gavinevans/gists{/gist_id}","starred_url":"https://api.github.com/users/gavinevans/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gavinevans/subscriptions","organizations_url":"https://api.github.com/users/gavinevans/orgs","repos_url":"https://api.github.com/users/gavinevans/repos","events_url":"https://api.github.com/users/gavinevans/events{/privacy}","received_events_url":"https://api.github.com/users/gavinevans/received_events","type":"User","site_admin":false},"assignees":[{"login":"gavinevans","id":26933341,"avatar_url":"https://avatars0.githubusercontent.com/u/26933341?v=3","gravatar_id":"","url":"https://api.github.com/users/gavinevans","html_url":"https://github.com/gavinevans","followers_url":"https://api.github.com/users/gavinevans/followers","following_url":"https://api.github.com/users/gavinevans/following{/other_user}","gists_url":"https://api.github.com/users/gavinevans/gists{/gist_id}","starred_url":"https://api.github.com/users/gavinevans/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gavinevans/subscriptions","organizations_url":"https://api.github.com/users/gavinevans/orgs","repos_url":"https://api.github.com/users/gavinevans/repos","events_url":"https://api.github.com/users/gavinevans/events{/privacy}","received_events_url":"https://api.github.com/users/gavinevans/received_events","type":"User","site_admin":false},{"login":"meabhnicguidhir","id":28393790,"avatar_url":"https://avatars0.githubusercontent.com/u/28393790?v=3","gravatar_id":"","url":"https://api.github.com/users/meabhnicguidhir","html_url":"https://github.com/meabhnicguidhir","followers_url":"https://api.github.com/users/meabhnicguidhir/followers","following_url":"https://api.github.com/users/meabhnicguidhir/following{/other_user}","gists_url":"https://api.github.com/users/meabhnicguidhir/gists{/gist_id}","starred_url":"https://api.github.com/users/meabhnicguidhir/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/meabhnicguidhir/subscriptions","organizations_url":"https://api.github.com/users/meabhnicguidhir/orgs","repos_url":"https://api.github.com/users/meabhnicguidhir/repos","events_url":"https://api.github.com/users/meabhnicguidhir/events{/privacy}","received_events_url":"https://api.github.com/users/meabhnicguidhir/received_events","type":"User","site_admin":false}],"requested_reviewers":[],"milestone":null,"commits_url":"https://api.github.com/repos/metoppv/improver/pulls/116/commits","review_comments_url":"https://api.github.com/repos/metoppv/improver/pulls/116/comments","review_comment_url":"https://api.github.com/repos/metoppv/improver/pulls/comments{/number}","comments_url":"https://api.github.com/repos/metoppv/improver/issues/116/comments","statuses_url":"https://api.github.com/repos/metoppv/improver/statuses/090ecc33c6fa553d591b59648f126246ff9cf22a","head":{"label":"meabhnicguidhir:67_wind_downscaling_cli","ref":"67_wind_downscaling_cli","sha":"090ecc33c6fa553d591b59648f126246ff9cf22a","user":{"login":"meabhnicguidhir","id":28393790,"avatar_url":"https://avatars0.githubusercontent.com/u/28393790?v=3","gravatar_id":"","url":"https://api.github.com/users/meabhnicguidhir","html_url":"https://github.com/meabhnicguidhir","followers_url":"https://api.github.com/users/meabhnicguidhir/followers","following_url":"https://api.github.com/users/meabhnicguidhir/following{/other_user}","gists_url":"https://api.github.com/users/meabhnicguidhir/gists{/gist_id}","starred_url":"https://api.github.com/users/meabhnicguidhir/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/meabhnicguidhir/subscriptions","organizations_url":"https://api.github.com/users/meabhnicguidhir/orgs","repos_url":"https://api.github.com/users/meabhnicguidhir/repos","events_url":"https://api.github.com/users/meabhnicguidhir/events{/privacy}","received_events_url":"https://api.github.com/users/meabhnicguidhir/received_events","type":"User","site_admin":false},"repo":{"id":90268062,"name":"improver","full_name":"meabhnicguidhir/improver","owner":{"login":"meabhnicguidhir","id":28393790,"avatar_url":"https://avatars0.githubusercontent.com/u/28393790?v=3","gravatar_id":"","url":"https://api.github.com/users/meabhnicguidhir","html_url":"https://github.com/meabhnicguidhir","followers_url":"https://api.github.com/users/meabhnicguidhir/followers","following_url":"https://api.github.com/u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