{"action":"opened","issue":{"url":"https://api.github.com/repos/waldronlab/curatedTCGAData/issues/3","repository_url":"https://api.github.com/repos/waldronlab/curatedTCGAData","labels_url":"https://api.github.com/repos/waldronlab/curatedTCGAData/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/waldronlab/curatedTCGAData/issues/3/comments","events_url":"https://api.github.com/repos/waldronlab/curatedTCGAData/issues/3/events","html_url":"https://github.com/waldronlab/curatedTCGAData/issues/3","id":240842639,"number":3,"title":"check patient counts and overlaps for COAD","user":{"login":"lwaldron","id":639942,"avatar_url":"https://avatars0.githubusercontent.com/u/639942?v=3","gravatar_id":"","url":"https://api.github.com/users/lwaldron","html_url":"https://github.com/lwaldron","followers_url":"https://api.github.com/users/lwaldron/followers","following_url":"https://api.github.com/users/lwaldron/following{/other_user}","gists_url":"https://api.github.com/users/lwaldron/gists{/gist_id}","starred_url":"https://api.github.com/users/lwaldron/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lwaldron/subscriptions","organizations_url":"https://api.github.com/users/lwaldron/orgs","repos_url":"https://api.github.com/users/lwaldron/repos","events_url":"https://api.github.com/users/lwaldron/events{/privacy}","received_events_url":"https://api.github.com/users/lwaldron/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2017-07-06T04:39:13Z","updated_at":"2017-07-06T04:39:13Z","closed_at":null,"body":"Do a human check to make sure this is correct - almost no overlap for the RNASeqGene dataset, even though there is for RNASeq2GeneNorm?\r\n\r\n```\r\nlibrary(MultiAssayExperiment)\r\nlibrary(RaggedExperiment)\r\ncoad <- readRDS(\"coadMAEO.rds\")\r\ncoad <- updateObject(coad)\r\ndate(); coad; date()\r\nupsetSamples(coad[, , c(\"CNASNP\", \"RNASeq2GeneNorm\", \"RNASeqGene\")])\r\n```\r\n\r\n![coadupset](https://user-images.githubusercontent.com/639942/27895764-163a63be-61e3-11e7-8fb2-397ce1eabc7c.png)\r\n\r\n"}}
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