{"action":"closed","issue":{"url":"https://api.github.com/repos/blab/zika-seq/issues/10","repository_url":"https://api.github.com/repos/blab/zika-seq","labels_url":"https://api.github.com/repos/blab/zika-seq/issues/10/labels{/name}","comments_url":"https://api.github.com/repos/blab/zika-seq/issues/10/comments","events_url":"https://api.github.com/repos/blab/zika-seq/issues/10/events","html_url":"https://github.com/blab/zika-seq/issues/10","id":228571822,"number":10,"title":"Logging file","user":{"login":"trvrb","id":1176109,"avatar_url":"https://avatars1.githubusercontent.com/u/1176109?v=3","gravatar_id":"","url":"https://api.github.com/users/trvrb","html_url":"https://github.com/trvrb","followers_url":"https://api.github.com/users/trvrb/followers","following_url":"https://api.github.com/users/trvrb/following{/other_user}","gists_url":"https://api.github.com/users/trvrb/gists{/gist_id}","starred_url":"https://api.github.com/users/trvrb/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/trvrb/subscriptions","organizations_url":"https://api.github.com/users/trvrb/orgs","repos_url":"https://api.github.com/users/trvrb/repos","events_url":"https://api.github.com/users/trvrb/events{/privacy}","received_events_url":"https://api.github.com/users/trvrb/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"barneypotter24","id":14949788,"avatar_url":"https://avatars1.githubusercontent.com/u/14949788?v=3","gravatar_id":"","url":"https://api.github.com/users/barneypotter24","html_url":"https://github.com/barneypotter24","followers_url":"https://api.github.com/users/barneypotter24/followers","following_url":"https://api.github.com/users/barneypotter24/following{/other_user}","gists_url":"https://api.github.com/users/barneypotter24/gists{/gist_id}","starred_url":"https://api.github.com/users/barneypotter24/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/barneypotter24/subscriptions","organizations_url":"https://api.github.com/users/barneypotter24/orgs","repos_url":"https://api.github.com/users/barneypotter24/repos","events_url":"https://api.github.com/users/barneypotter24/events{/privacy}","received_events_url":"https://api.github.com/users/barneypotter24/received_events","type":"User","site_admin":false},"assignees":[{"login":"barneypotter24","id":14949788,"avatar_url":"https://avatars1.githubusercontent.com/u/14949788?v=3","gravatar_id":"","url":"https://api.github.com/users/barneypotter24","html_url":"https://github.com/barneypotter24","followers_url":"https://api.github.com/users/barneypotter24/followers","following_url":"https://api.github.com/users/barneypotter24/following{/other_user}","gists_url":"https://api.github.com/users/barneypotter24/gists{/gist_id}","starred_url":"https://api.github.com/users/barneypotter24/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/barneypotter24/subscriptions","organizations_url":"https://api.github.com/users/barneypotter24/orgs","repos_url":"https://api.github.com/users/barneypotter24/repos","events_url":"https://api.github.com/users/barneypotter24/events{/privacy}","received_events_url":"https://api.github.com/users/barneypotter24/received_events","type":"User","site_admin":false}],"milestone":null,"comments":3,"created_at":"2017-05-14T21:34:57Z","updated_at":"2017-07-06T21:25:34Z","closed_at":"2017-07-06T21:25:34Z","body":"This is dangerous: https://github.com/blab/zika-seq/blob/master/pipeline/scripts/pipeline.py#L244\r\n\r\nYou don't want two simultaneous runs of `pipeline.py` to try to write to the same `log.txt` file. Instead, just write to standard out. This debugs nicely locally and will automatically write to files like `slurm-50293878.out` on Rhino. Or if there's an important reason to keep this separate from standard out, append the time to this file to ensure uniqueness."}}
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