{"action":"created","comment":{"url":"https://api.github.com/repos/JuliaStats/NullableArrays.jl/pulls/comments/100420768","pull_request_review_id":21128638,"id":100420768,"diff_hunk":"@@ -179,6 +181,30 @@ end\n dropnull(X::NullableVector) = X.values[!X.isnull]    # -> Vector\n \n \"\"\"\n+    dropnull!(X::AbstractVector)\n+\n+Remove null entries of `X` in-place and return the updated vector. This is a\n+no-op if no nulls are present.\n+\n+    dropnull!(X::NullableVector)\n+\n+Remove null entries of `X` in-place and return a `Vector` view of `X.values`\n+\"\"\"\n+function dropnull!(X::AbstractVector)\n+    if !(Nullable <: eltype(X))\n+        return X\n+    end\n+    deleteat!(X, find(isnull, X))\n+end\n+function dropnull!{T<:Nullable}(X::AbstractVector{T})","path":"src/primitives.jl","position":38,"original_position":38,"commit_id":"863a8e6e56d3200daa1212b565fe9ee21bc14965","original_commit_id":"863a8e6e56d3200daa1212b565fe9ee21bc14965","user":{"login":"nalimilan","id":1120448,"avatar_url":"https://avatars.githubusercontent.com/u/1120448?v=3","gravatar_id":"","url":"https://api.github.com/users/nalimilan","html_url":"https://github.com/nalimilan","followers_url":"https://api.github.com/users/nalimilan/followers","following_url":"https://api.github.com/users/nalimilan/following{/other_user}","gists_url":"https://api.github.com/users/nalimilan/gists{/gist_id}","starred_url":"https://api.github.com/users/nalimilan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nalimilan/subscriptions","organizations_url":"https://api.github.com/users/nalimilan/orgs","repos_url":"https://api.github.com/users/nalimilan/repos","events_url":"https://api.github.com/users/nalimilan/events{/privacy}","received_events_url":"https://api.github.com/users/nalimilan/received_events","type":"User","site_admin":false},"body":"Actually, I guess we could merge this method with the previous one by adding `!(eltype(X) <: Nullable) &&` to the `if`? (Could also add a `T` type parameter to make this shorter.)","created_at":"2017-02-09T21:49:23Z","updated_at":"2017-02-09T21:49:23Z","html_url":"https://github.com/JuliaStats/NullableArrays.jl/pull/179#discussion_r100420768","pull_request_url":"https://api.github.com/repos/JuliaStats/NullableArrays.jl/pulls/179","_links":{"self":{"href":"https://api.github.com/repos/JuliaStats/NullableArrays.jl/pulls/comments/100420768"},"html":{"href":"https://github.com/JuliaStats/NullableArrays.jl/pull/179#discussion_r100420768"},"pull_request":{"href":"https://api.github.com/repos/JuliaStats/NullableArrays.jl/pulls/179"}}},"pull_request":{"url":"https://api.github.com/repos/JuliaStats/NullableArrays.jl/pulls/179","id":104616030,"html_url":"https://github.com/JuliaStats/NullableArrays.jl/pull/179","diff_url":"https://github.com/JuliaStats/NullableArrays.jl/pull/179.diff","patch_url":"https://github.com/JuliaStats/NullableArrays.jl/pull/179.patch","issue_url":"https://api.github.com/repos/JuliaStats/NullableArrays.jl/issues/179","number":179,"state":"open","locked":false,"title":"[WIP] add dropnull!","user":{"login":"cjprybol","id":3497642,"avatar_url":"https://avatars.githubusercontent.com/u/3497642?v=3","gravatar_id":"","url":"https://api.github.com/users/cjprybol","html_url":"https://github.com/cjprybol","followers_url":"https://api.github.com/users/cjprybol/followers","following_url":"https://api.github.com/users/cjprybol/following{/other_user}","gists_url":"https://api.github.com/users/cjprybol/gists{/gist_id}","starred_url":"https://api.github.com/users/cjprybol/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjprybol/subscriptions","organizations_url":"https://api.github.com/users/cjprybol/orgs","repos_url":"https://api.github.com/users/cjprybol/repos","events_url":"https://api.github.com/users/cjprybol/events{/privacy}","received_events_url":"https://api.github.com/users/cjprybol/received_events","type":"User","site_admin":false},"body":"I wanted to add a `dropnull!` function here before extending both `dropnull` and `dropnull!` in DataFrames (see https://github.com/JuliaStats/DataFrames.jl/issues/602 https://github.com/JuliaStats/DataFrames.jl/issues/1156)\r\n\r\nThis pull request currently does not pass the test cases that have been established for the current `dropnull` function, which I have used for testing `dropnull!`\r\n```julia\r\nusing NullableArrays\r\nusing BenchmarkTools\r\nusing Base.Test\r\n\r\n# dropnull(X::NullableVector)\r\nz = NullableArray([1, 2, 3, 'a', 5, 'b', 7, 'c'], Int, Char)\r\n# dropnull(X::AbstractVector)\r\nA = Any[Nullable(1), Nullable(2), Nullable(3), Nullable(), Nullable(5),\r\n\t\tNullable(), Nullable(7), Nullable()]\r\n# dropnull(X::AbstractVector{<:Nullable})\r\nB = convert(Vector{Nullable}, A)\r\n@test dropnull(z) == dropnull!(z) == [1, 2, 3, 5, 7]\r\n@test dropnull(A) == dropnull!(A) == [1, 2, 3, 5, 7]\r\n@test dropnull(B) == dropnull!(B) == [1, 2, 3, 5, 7]\r\n```\r\n\r\noutput\r\n```julia\r\njulia> @test dropnull(z) == dropnull!(z) == [1, 2, 3, 5, 7]\r\nTest Passed\r\n  Expression: $(Expr(:escape, :(dropnull(z)))) $(Expr(:escape, :(==))) $(Expr(:escape, :(dropnull!(z)))) $(Expr(:escape, :(==))) $(Expr(:escape, :([1,2,3,5,7])))\r\n   Evaluated: [1,2,3,5,7] == [1,2,3,5,7] == [1,2,3,5,7]\r\n\r\njulia> @test dropnull(A) == dropnull!(A) == [1, 2, 3, 5, 7]\r\nTest Failed\r\n  Expression: $(Expr(:escape, :(dropnull(A)))) $(Expr(:escape, :(==))) $(Expr(:escape, :(dropnull!(A)))) $(Expr(:escape, :(==))) $(Expr(:escape, :([1,2,3,5,7])))\r\n   Evaluated: Any[1,2,3,5,7] == Any[1,2,3,5,7] == [1,2,3,5,7]\r\nERROR: There was an error during testing\r\n in record(::Base.Test.FallbackTestSet, ::Base.Test.Fail) at ./test.jl:397\r\n in do_test(::Base.Test.Returned, ::Expr) at ./test.jl:281\r\n\r\njulia> @test dropnull(B) == dropnull!(B) == [1, 2, 3, 5, 7]\r\nTest Failed\r\n  Expression: $(Expr(:escape, :(dropnull(B)))) $(Expr(:escape, :(==))) $(Expr(:escape, :(dropnull!(B)))) $(Expr(:escape, :(==))) $(Expr(:escape, :([1,2,3,5,7])))\r\n   Evaluated: Any[1,2,3,5,7] == Nullable[1,2,3,5,7] == [1,2,3,5,7]\r\nERROR: There was an error during testing\r\n in record(::Base.Test.FallbackTestSet, ::Base.Test.Fail) at ./test.jl:397\r\n in do_test(::Base.Test.Returned, ::Expr) at ./test.jl:281\r\n```\r\n\r\nIt's unclear to me why in the second test case `dropnull` passes while `dropnull!` doesn't even though the outputs are both `Array{Any,1}`. Using `isequal()` does not change the test outcome.\r\n```julia\r\njulia> @test dropnull(A) == [1, 2, 3, 5, 7]\r\nTest Passed\r\n  Expression: dropnull(A) == [1,2,3,5,7]\r\n   Evaluated: Any[1,2,3,5,7] == [1,2,3,5,7]\r\n\r\njulia> @test dropnull!(A) == [1, 2, 3, 5, 7]\r\nTest Failed\r\n  Expression: dropnull!(A) == [1,2,3,5,7]\r\n   Evaluated: Any[1,2,3,5,7] == [1,2,3,5,7]\r\nERROR: There was an error during testing\r\n in record(::Base.Test.FallbackTestSet, ::Base.Test.Fail) at ./test.jl:397\r\n in do_test(::Base.Test.Returned, ::Expr) at ./test.jl:281\r\n\r\n julia> A = Any[Nullable(1), Nullable(2), Nullable(3), Nullable(), Nullable(5),\r\n                               Nullable(), Nullable(7), Nullable()];\r\n\r\n julia> typeof(dropnull(A))\r\n Array{Any,1}\r\n\r\n julia> typeof(dropnull!(A))\r\n Array{Any,1}\r\n\r\n julia> A = Any[Nullable(1), Nullable(2), Nullable(3), Nullable(), Nullable(5),\r\n                               Nullable(), Nullable(7), Nullable()];\r\n\r\n julia> eltype(dropnull(A))\r\n Any\r\n\r\n julia> eltype(dropnull!(A))\r\n Any\r\n```\r\n\r\nI'm also interested in feedback on the third test case, where `dropnull` produces `Array{Any,1}` and `dropnull!` produces `Array{Nullable,1}`. Is there a reason to prefer one over the other?\r\n```julia\r\njulia> @test dropnull(B) == dropnull!(B) == [1, 2, 3, 5, 7]\r\nTest Failed\r\n  Expression: $(Expr(:escape, :(dropnull(B)))) $(Expr(:escape, :(==))) $(Expr(:escape, :(dropnull!(B)))) $(Expr(:escape, :(==))) $(Expr(:escape, :([1,2,3,5,7])))\r\n   Evaluated: Any[1,2,3,5,7] == Nullable[1,2,3,5,7] == [1,2,3,5,7]\r\nERROR: There was an error during testing\r\n in record(::Base.Test.FallbackTestSet, ::Base.Test.Fail) at ./test.jl:397\r\n in do_test(::Base.Test.Returned, ::Expr) at ./test.jl:281\r\n```\r\n\r\nThe benchmarks look ok except for `dropnull!(C)`, where the inplace version is slower than `dropnull(C)` for reasons I don't understand. `dropnull!(D)` makes more allocations than `dropnull(D)` but is still faster\r\n\r\nbenchmark\r\n```julia\r\nsrand(1)\r\nA = NullableArray(rand([0, 1, Nullable()], Int(1e6)));\r\nB = rand([0, 1, Nullable()], Int(1e6));\r\nC = NullableArray(rand([:Q, 1, Nullable()], Int(1e6)));\r\nD = rand([:Q, 1, Nullable()], Int(1e6));\r\n@benchmark dropnull(A)\r\n@benchmark dropnull!(A)\r\n@benchmark dropnull(B)\r\n@benchmark dropnull!(B)\r\n@benchmark dropnull(C)\r\n@benchmark dropnull!(C)\r\n@benchmark dropnull(D)\r\n@benchmark dropnull!(D)\r\n```\r\n\r\nresults\r\n```julia\r\njulia> @benchmark dropnull(A)\r\nBenchmarkTools.Trial:\r\n  memory estimate:  6.03 mb\r\n  allocs estimate:  6\r\n  --------------\r\n  minimum time:     5.301 ms (0.00% GC)\r\n  median time:      6.044 ms (0.00% GC)\r\n  mean time:        6.306 ms (4.95% GC)\r\n  maximum time:     10.372 ms (13.32% GC)\r\n  --------------\r\n  samples:          793\r\n  evals/sample:     1\r\n  time tolerance:   5.00%\r\n  memory tolerance: 1.00%\r\n\r\njulia> @benchmark dropnull!(A)\r\nBenchmarkTools.Trial:\r\n  memory estimate:  288.00 bytes\r\n  allocs estimate:  4\r\n  --------------\r\n  minimum time:     998.744 μs (0.00% GC)\r\n  median time:      1.081 ms (0.00% GC)\r\n  mean time:        1.139 ms (0.00% GC)\r\n  maximum time:     2.752 ms (0.00% GC)\r\n  --------------\r\n  samples:          4388\r\n  evals/sample:     1\r\n  time tolerance:   5.00%\r\n  memory tolerance: 1.00%\r\n\r\njulia> @benchmark dropnull(B)\r\nBenchmarkTools.Trial:\r\n  memory estimate:  22.09 mb\r\n  allocs estimate:  22\r\n  --------------\r\n  minimum time:     14.614 ms (9.83% GC)\r\n  median time:      15.192 ms (10.47% GC)\r\n  mean time:        15.631 ms (10.36% GC)\r\n  maximum time:     19.828 ms (9.03% GC)\r\n  --------------\r\n  samples:          320\r\n  evals/sample:     1\r\n  time tolerance:   5.00%\r\n  memory tolerance: 1.00%\r\n\r\njulia> @benchmark dropnull!(B)\r\nBenchmarkTools.Trial:\r\n  memory estimate:  160.00 bytes\r\n  allocs estimate:  2\r\n  --------------\r\n  minimum time:     564.757 μs (0.00% GC)\r\n  median time:      606.058 μs (0.00% GC)\r\n  mean time:        634.440 μs (0.00% GC)\r\n  maximum time:     1.357 ms (0.00% GC)\r\n  --------------\r\n  samples:          7862\r\n  evals/sample:     1\r\n  time tolerance:   5.00%\r\n  memory tolerance: 1.00%\r\n\r\njulia> @benchmark dropnull(C)\r\nBenchmarkTools.Trial:\r\n  memory estimate:  6.05 mb\r\n  allocs estimate:  6\r\n  --------------\r\n  minimum time:     6.013 ms (0.00% GC)\r\n  median time:      6.934 ms (0.00% GC)\r\n  mean time:        7.086 ms (4.10% GC)\r\n  maximum time:     10.903 ms (17.99% GC)\r\n  --------------\r\n  samples:          706\r\n  evals/sample:     1\r\n  time tolerance:   5.00%\r\n  memory tolerance: 1.00%\r\n\r\njulia> @benchmark dropnull!(C)\r\nBenchmarkTools.Trial:\r\n  memory estimate:  71.37 mb\r\n  allocs estimate:  2004545\r\n  --------------\r\n  minimum time:     59.823 ms (8.33% GC)\r\n  median time:      66.289 ms (9.09% GC)\r\n  mean time:        66.455 ms (9.15% GC)\r\n  maximum time:     76.234 ms (11.40% GC)\r\n  --------------\r\n  samples:          76\r\n  evals/sample:     1\r\n  time tolerance:   5.00%\r\n  memory tolerance: 1.00%\r\n\r\njulia> @benchmark dropnull(D)\r\nBenchmarkTools.Trial:\r\n  memory estimate:  14.09 mb\r\n  allocs estimate:  22\r\n  --------------\r\n  minimum time:     12.920 ms (0.00% GC)\r\n  median time:      15.949 ms (9.93% GC)\r\n  mean time:        15.856 ms (7.98% GC)\r\n  maximum time:     22.595 ms (20.56% GC)\r\n  --------------\r\n  samples:          316\r\n  evals/sample:     1\r\n  time tolerance:   5.00%\r\n  memory tolerance: 1.00%\r\n\r\njulia> @benchmark dropnull!(D)\r\nBenchmarkTools.Trial:\r\n  memory estimate:  20.37 mb\r\n  allocs estimate:  667464\r\n  --------------\r\n  minimum time:     3.712 ms (0.00% GC)\r\n  median time:      4.898 ms (18.68% GC)\r\n  mean time:        5.015 ms (18.00% GC)\r\n  maximum time:     8.406 ms (18.44% GC)\r\n  --------------\r\n  samples:          997\r\n  evals/sample:     1\r\n  time tolerance:   5.00%\r\n  memory tolerance: 1.00%\r\n```\r\n\r\nI think that's enough questions for one post. Thanks in advance for any advice on how to proceed.","created_at":"2017-02-03T21:35:22Z","updated_at":"2017-02-09T21:49:23Z","closed_at":null,"merged_at":null,"merge_commit_sha":"6716619ef044354760bd4540615fb529413827f6","assignee":null,"assignees":[],"milestone":null,"commits_url":"https://api.github.com/repos/JuliaStats/NullableArrays.jl/pulls/179/commits","review_comments_url":"https://api.github.com/repos/JuliaStats/NullableArrays.jl/pulls/179/comments","review_comment_url":"https://api.github.com/repos/JuliaStats/NullableArrays.jl/pulls/comments{/number}","comments_url":"https://api.github.com/repos/JuliaStats/NullableArrays.jl/issues/179/comments","statuses_url":"https://api.github.com/repos/JuliaStats/NullableArrays.jl/statuses/863a8e6e56d3200daa1212b565fe9ee21bc14965","head":{"label":"cjprybol:pull-request/03a6f33e","ref":"pull-request/03a6f33e","sha":"863a8e6e56d3200daa1212b565fe9ee21bc14965","user":{"login":"cjprybol","id":3497642,"avatar_url":"https://avatars.githubusercontent.com/u/3497642?v=3","gravatar_id":"","url":"https://api.github.com/users/cjprybol","html_url":"https://github.com/cjprybol","followers_url":"https://api.github.com/users/cjprybol/followers","following_url":"https://api.github.com/users/cjprybol/following{/other_user}","gists_url":"https://api.github.com/users/cjprybol/gists{/gist_id}","starred_url":"https://api.github.com/users/cjprybol/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjprybol/subscriptions","organizations_url":"https://api.github.com/users/cjprybol/orgs","repos_url":"https://api.github.com/users/cjprybol/repos","events_url":"https://api.github.com/users/cjprybol/events{/privacy}","received_events_url":"https://api.github.com/users/cjprybol/received_events","type":"User","site_admin":false},"repo":{"id":80864515,"name":"NullableArrays.jl","full_name":"cjprybol/NullableArrays.jl","owner":{"login":"cjprybol","id":3497642,"avatar_url":"https://avatars.githubusercontent.com/u/3497642?v=3","gravatar_id":"","url":"https://api.github.com/users/cjprybol","html_url":"https://github.com/cjprybol","followers_url":"https://api.github.com/users/cjprybol/followers","following_url":"https://api.github.com/users/cjprybol/following{/other_user}","gists_url":"https://api.github.com/users/cjprybol/gists{/gist_id}","starred_url":"https://api.github.com/users/cjprybol/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjprybol/subscriptions","organizations_url":"https://api.github.com/users/cjprybol/orgs","repos_url":"https://api.github.com/users/cjprybol/repos","events_url":"https://api.github.com/users/cjprybol/events{/privacy}","received_events_url":"https://api.github.com/users/cjprybol/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/cjprybol/NullableArrays.jl","description":"Prototype 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