{"action":"created","issue":{"url":"https://api.github.com/repos/greenelab/deep-review/issues/262","repository_url":"https://api.github.com/repos/greenelab/deep-review","labels_url":"https://api.github.com/repos/greenelab/deep-review/issues/262/labels{/name}","comments_url":"https://api.github.com/repos/greenelab/deep-review/issues/262/comments","events_url":"https://api.github.com/repos/greenelab/deep-review/issues/262/events","html_url":"https://github.com/greenelab/deep-review/issues/262","id":210356314,"number":262,"title":"Complete placeholder references","user":{"login":"dhimmel","id":1117703,"avatar_url":"https://avatars2.githubusercontent.com/u/1117703?v=3","gravatar_id":"","url":"https://api.github.com/users/dhimmel","html_url":"https://github.com/dhimmel","followers_url":"https://api.github.com/users/dhimmel/followers","following_url":"https://api.github.com/users/dhimmel/following{/other_user}","gists_url":"https://api.github.com/users/dhimmel/gists{/gist_id}","starred_url":"https://api.github.com/users/dhimmel/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dhimmel/subscriptions","organizations_url":"https://api.github.com/users/dhimmel/orgs","repos_url":"https://api.github.com/users/dhimmel/repos","events_url":"https://api.github.com/users/dhimmel/events{/privacy}","received_events_url":"https://api.github.com/users/dhimmel/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2017-02-26T22:56:41Z","updated_at":"2017-03-14T21:04:26Z","closed_at":null,"body":"Here is the [list of placeholder references](https://travis-ci.org/greenelab/deep-review/builds/205619545#L279-L309) that were detected by CI:\r\n\r\n```\r\n[refs]\r\n[blast]\r\n[McHardy]\r\n[nbc]\r\n[ref]\r\n[ref]\r\n[ref]\r\n[ref]\r\n[Vervier]\r\n[Yok,Soueidan]\r\n[Guetterman]\r\n[Knights]\r\n[Stratnikov, Segata]\r\n[ Ding et al]\r\n[Liu, Segata]\r\n[Ditzler,Ditzler]\r\n[Hoff]\r\n[ref]\r\n[Asgari]\r\n[Hochreiter, Sonderby]\r\n[Abe]\r\n[Salzberg]\r\n[tac-elm]\r\n[Mrzelj]\r\n[Ditzler]\r\n[Faruqi]\r\n[Boza]\r\n[ref]\r\n[availability impacts on amount, etc]\r\n[possibly, depends if raised in multiple areas]\r\n```\r\n\r\nIt looks like many of these placeholders were added in https://github.com/greenelab/deep-review/pull/200/files by @gailrosen.\r\n\r\n@agitter, @cgreene, @gailrosen it'd be great to get these converted to actual citations. Once we fix these references, I can configure CI to fail if any placeholder references are included."},"comment":{"url":"https://api.github.com/repos/greenelab/deep-review/issues/comments/286560006","html_url":"https://github.com/greenelab/deep-review/issues/262#issuecomment-286560006","issue_url":"https://api.github.com/repos/greenelab/deep-review/issues/262","id":286560006,"user":{"login":"gailrosen","id":5216441,"avatar_url":"https://avatars2.githubusercontent.com/u/5216441?v=3","gravatar_id":"","url":"https://api.github.com/users/gailrosen","html_url":"https://github.com/gailrosen","followers_url":"https://api.github.com/users/gailrosen/followers","following_url":"https://api.github.com/users/gailrosen/following{/other_user}","gists_url":"https://api.github.com/users/gailrosen/gists{/gist_id}","starred_url":"https://api.github.com/users/gailrosen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gailrosen/subscriptions","organizations_url":"https://api.github.com/users/gailrosen/orgs","repos_url":"https://api.github.com/users/gailrosen/repos","events_url":"https://api.github.com/users/gailrosen/events{/privacy}","received_events_url":"https://api.github.com/users/gailrosen/received_events","type":"User","site_admin":false},"created_at":"2017-03-14T21:04:26Z","updated_at":"2017-03-14T21:04:26Z","body":"how about this.. I added them here:\nhttps://github.com/gailrosen/deep-review/blob/master/references/tags.tsv\n\nOn Mon, Feb 27, 2017 at 5:14 PM, Daniel Himmelstein <\nnotifications@github.com> wrote:\n\n> @gailrosen <https://github.com/gailrosen> no worries. Take your time. I\n> just wanted to open this issue, so we remember to address these references.\n> Best of luck in these busy times!\n>\n> —\n> You are receiving this because you were mentioned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/greenelab/deep-review/issues/262#issuecomment-282873810>,\n> or mute the thread\n> <https://github.com/notifications/unsubscribe-auth/AE-Yue_VLw5kYrlpqwi14AAO3AGwuPIIks5rg0qygaJpZM4MMjiU>\n> .\n>\n\n\n\n-- \nGail L. Rosen, Associate Professor\nElectrical and Computer Engineering\nDirector of the Center for Biological Discovery from Big Data\n<http://biomed.drexel.edu/labs/biodiscovery/>\nDrexel University\nWebpage/Contact info:  http://www.ece.drexel.edu/gailr\n"}}
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