{"action":"created","issue":{"url":"https://api.github.com/repos/seqan/seqan/issues/2136","repository_url":"https://api.github.com/repos/seqan/seqan","labels_url":"https://api.github.com/repos/seqan/seqan/issues/2136/labels{/name}","comments_url":"https://api.github.com/repos/seqan/seqan/issues/2136/comments","events_url":"https://api.github.com/repos/seqan/seqan/issues/2136/events","html_url":"https://github.com/seqan/seqan/issues/2136","id":265497686,"number":2136,"title":"2.3.2 test errors on powerpc","user":{"login":"mr-c","id":1330696,"avatar_url":"https://avatars3.githubusercontent.com/u/1330696?v=4","gravatar_id":"","url":"https://api.github.com/users/mr-c","html_url":"https://github.com/mr-c","followers_url":"https://api.github.com/users/mr-c/followers","following_url":"https://api.github.com/users/mr-c/following{/other_user}","gists_url":"https://api.github.com/users/mr-c/gists{/gist_id}","starred_url":"https://api.github.com/users/mr-c/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mr-c/subscriptions","organizations_url":"https://api.github.com/users/mr-c/orgs","repos_url":"https://api.github.com/users/mr-c/repos","events_url":"https://api.github.com/users/mr-c/events{/privacy}","received_events_url":"https://api.github.com/users/mr-c/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2017-10-14T15:07:30Z","updated_at":"2017-10-27T06:32:35Z","closed_at":null,"author_association":"CONTRIBUTOR","body":"Built on `powerpc` for `powepc`\r\n\r\nThis build does have `-DCMAKE_CXX_FLAGS=\"-DSEQAN_ASYNC_IO=0\"` as requested by @h-2 \r\n\r\n[Full log](https://buildd.debian.org/status/fetch.php?pkg=seqan2&arch=powerpc&ver=2.3.2%2Bdfsg2-2&stamp=1507990044&raw=0)\r\n- [ ] test_test_bam_io (SEGFAULT)\r\n```\r\n/«BUILDDIR»/seqan2-2.3.2+dfsg2/tests/bam_io/test_bam_sam_conversion.h:92 Assertion failed : CharString(\"XX:i:-1234\") == CharString(samTags) was: XX:i:-1234 != XX:i:12027\r\n\r\nstack trace:\r\n  0        [0x207238d8]  seqan::ClassTest::fail() + 0x40\r\n  1        [0x207326b0]  void SEQAN_TEST_test_assign_tags_bam_to_sam_type_s<true>() + 0xd4\r\n  2        [0x20716ef0]  main + 0x1d4\r\n  3        [0x1ffa1254]  /lib/powerpc-linux-gnu/libc.so.6(+0x21254)\r\n  4        [0x1ffa145c]  __libc_start_main + 0xdc\r\n\r\ntest_assign_tags_bam_to_sam_type_s FAILED\r\n/«BUILDDIR»/seqan2-2.3.2+dfsg2/tests/bam_io/test_bam_sam_conversion.h:102 Assertion failed : CharString(\"XX:i:64302\") == CharString(samTags) was: XX:i:64302 != XX:i:12027\r\n\r\nstack trace:\r\n  0        [0x207238d8]  seqan::ClassTest::fail() + 0x40\r\n  1        [0x20732818]  void SEQAN_TEST_test_assign_tags_bam_to_sam_type_S<true>() + 0xd4\r\n  2        [0x20716f00]  main + 0x1e4\r\n  3        [0x1ffa1254]  /lib/powerpc-linux-gnu/libc.so.6(+0x21254)\r\n  4        [0x1ffa145c]  __libc_start_main + 0xdc\r\n\r\ntest_assign_tags_bam_to_sam_type_S FAILED\r\n/«BUILDDIR»/seqan2-2.3.2+dfsg2/tests/bam_io/test_bam_sam_conversion.h:112 Assertion failed : CharString(\"XX:i:-1071776001\") == CharString(samTags) was: XX:i:-1071776001 != XX:i:-123456\r\n\r\nstack trace:\r\n  0        [0x207238d8]  seqan::ClassTest::fail() + 0x40\r\n  1        [0x20732980]  void SEQAN_TEST_test_assign_tags_bam_to_sam_type_i<true>() + 0xd4\r\n  2        [0x20716f10]  main + 0x1f4\r\n  3        [0x1ffa1254]  /lib/powerpc-linux-gnu/libc.so.6(+0x21254)\r\n  4        [0x1ffa145c]  __libc_start_main + 0xdc\r\n\r\ntest_assign_tags_bam_to_sam_type_i FAILED\r\n/«BUILDDIR»/seqan2-2.3.2+dfsg2/tests/bam_io/test_bam_sam_conversion.h:122 Assertion failed : CharString(\"XX:i:3223191295\") == CharString(samTags) was: XX:i:3223191295 != XX:i:4294843840\r\n\r\nstack trace:\r\n  0        [0x207238d8]  seqan::ClassTest::fail() + 0x40\r\n  1        [0x20732ae8]  void SEQAN_TEST_test_assign_tags_bam_to_sam_type_I<true>() + 0xd4\r\n  2        [0x20716f20]  main + 0x204\r\n  3        [0x1ffa1254]  /lib/powerpc-linux-gnu/libc.so.6(+0x21254)\r\n  4        [0x1ffa145c]  __libc_start_main + 0xdc\r\n\r\ntest_assign_tags_bam_to_sam_type_I FAILED\r\n/«BUILDDIR»/seqan2-2.3.2+dfsg2/tests/bam_io/test_bam_sam_conversion.h:135 Assertion failed : CharString(\"XX:f:0.5\") == CharString(samTags) was: XX:f:0.5 != XX:f:8.82818e-44\r\n\r\nstack trace:\r\n  0        [0x207238d8]  seqan::ClassTest::fail() + 0x40\r\n  1        [0x20732c90]  void SEQAN_TEST_test_assign_tags_bam_to_sam_type_f<true>() + 0x114\r\n  2        [0x20716f30]  main + 0x214\r\n  3        [0x1ffa1254]  /lib/powerpc-linux-gnu/libc.so.6(+0x21254)\r\n  4        [0x1ffa145c]  __libc_start_main + 0xdc\r\n\r\ntest_assign_tags_bam_to_sam_type_f FAILED\r\ntest_assign_tags_bam_to_sam_type_Z OK\r\ntest_assign_tags_bam_to_sam_type_H OK\r\n\r\n\r\nstack trace:\r\n  0        [0x20713c88]  /«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/test_bam_io(+0xd3c88)\r\n  1          [0x1003b4]  __kernel_sigtramp32 + 0\r\n  2        [0x207d636c]  bool seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >::operator()<signed char>(signed char) + 0x5c\r\n  3        [0x207d6368]  bool seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >::operator()<signed char>(signed char) + 0x58\r\n  4        [0x207d15b8]  bool seqan::tagApply<seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >, signed char>(seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >&, seqan::TagList<signed char, void>) + 0x38\r\n  5        [0x207cbc14]  bool seqan::tagApply<seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >, unsigned char, seqan::TagList<signed char, void> >(seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >&, seqan::TagList<unsigned char, seqan::TagList<signed char, void> >) + 0x64\r\n  6        [0x207c53c8]  bool seqan::tagApply<seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >, char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >(seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >&, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > >) + 0x64\r\n  7        [0x207bc89c]  bool seqan::tagApply<seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >, unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >(seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >&, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > >) + 0x64\r\n  8        [0x207b3518]  bool seqan::tagApply<seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >, short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >(seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >&, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > >) + 0x64\r\n  9        [0x207a7ae8]  bool seqan::tagApply<seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >, float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >(seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >&, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > >) + 0x7c\r\n 10        [0x2079a204]  bool seqan::tagApply<seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >, unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >(seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >&, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > >) + 0x64\r\n 11        [0x207882b0]  bool seqan::tagApply<seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >, int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >(seqan::AssignTagsBamToSamOneTagHelper_<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >&, seqan::TagList<int, seqan::TagList<unsigned int, seqan::TagList<float, seqan::TagList<short, seqan::TagList<unsigned short, seqan::TagList<char, seqan::TagList<unsigned char, seqan::TagList<signed char, void> > > > > > > >) + 0x64\r\n 12        [0x20774248]  void seqan::_appendTagsBamToSamOneTag<seqan::String<char, seqan::Alloc<void> >, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > > >(seqan::String<char, seqan::Alloc<void> >&, seqan::Iter<seqan::String<char, seqan::Alloc<void> > const, seqan::AdaptorIterator<char const*, seqan::Tag<seqan::Default_> > >&) + 0x3ec\r\n 13        [0x2075fbe4]  void seqan::appendTagsBamToSam<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> >&, seqan::String<char, seqan::Alloc<void> > const&) + 0x64\r\n 14        [0x2074c9c8]  void seqan::assignTagsBamToSam<seqan::String<char, seqan::Alloc<void> >, seqan::String<char, seqan::Alloc<void> > >(seqan::String<char, seqan::Alloc<void> >&, seqan::String<char, seqan::Alloc<void> > const&) + 0x34\r\n 15        [0x20733110]  void SEQAN_TEST_test_assign_tags_bam_to_sam_type_Bc<true>() + 0x9c\r\n 16        [0x20716f60]  main + 0x244\r\n 17        [0x1ffa1254]  /lib/powerpc-linux-gnu/libc.so.6(+0x21254)\r\n 18        [0x1ffa145c]  __libc_start_main + 0xdc\r\n```\r\n- [x] test_test_basic_alphabet (Failed)\r\n```\r\n/<<BUILDDIR>>/seqan2-2.3.2+dfsg2/tests/basic/test_basic_alphabet_adapt_builtins.h:287 Assertion failed : +ValueSize<long>::VALUE == 4294967296ull was: 0 != 4294967296\r\n\r\nstack trace:\r\n  0       [0x1214f5410]  /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-powerpc64-linux-gnu/bin/test_basic_alphabet(_ZN5seqan9ClassTest4failEv-0x46da0)\r\n  1       [0x1214f9ad4]  /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-powerpc64-linux-gnu/bin/test_basic_alphabet(_Z59SEQAN_TEST_test_basic_alphabet_adapt_builtins_concepts_longILb1EEvv-0x42f04)\r\n  2       [0x1214ed72c]  /<<BUILDDIR>>/seqan2-2.3.2+dfsg2/obj-powerpc64-linux-gnu/bin/test_basic_alphabet(main-0x4eebc)\r\n  3    [0x7fff90c96388]  /lib/powerpc64-linux-gnu/libc.so.6(+0x46388)\r\n  4    [0x7fff90c965d8]  /lib/powerpc64-linux-gnu/libc.so.6(__libc_start_main-0x187a18)\r\n```\r\n- [ ] test_test_seq_io (Failed)\r\n```\r\nUnexpected exception of type std::ios_base::failure[abi:cxx11]; message: Invalid BGZF block header.: iostream error\r\ntest_seq_io_bam_file_bam_read_sequences FAILED\r\nUnexpected exception of type std::ios_base::failure[abi:cxx11]; message: Invalid BGZF block header.: iostream error\r\ntest_seq_io_bam_file_bam_read_sequences_and_qualities FAILED\r\nUnexpected exception of type std::ios_base::failure[abi:cxx11]; message: Invalid BGZF block header.: iostream error\r\ntest_seq_io_bam_file_bam_write_sequences FAILED\r\nUnexpected exception of type std::ios_base::failure[abi:cxx11]; message: Invalid BGZF block header.: iostream error\r\ntest_seq_io_bam_file_bam_write_sequences_and_qualities FAILED\r\n```\r\n- [ ] test_test_store (Failed)\r\n```\r\nUnexpected exception of type std::ios_base::failure[abi:cxx11]; message: Invalid BGZF block header.: iostream error\r\ntest_store_io_read_bam FAILED\r\n```\r\n- [ ] test_test_stream (SEGFAULT)\r\n```\r\n/«BUILDDIR»/seqan2-2.3.2+dfsg2/include/seqan/file/file_mapping.h:700 FAILED!  (\r\n\r\nstack trace:\r\n  0        [0x20615398]  /«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/test_stream(+0xf5398)\r\n  1          [0x1003b4]  __kernel_sigtramp32 + 0\r\n  2        [0x1fef5408]  strlen + 0xc\r\n  3        [0x1feb5494]  _IO_vfprintf + 0x7b4\r\n  4        [0x1feb2608]  /lib/powerpc-linux-gnu/libc.so.6(+0x52608)\r\n  5        [0x1feb4f90]  _IO_vfprintf + 0x2b0\r\n  6        [0x20617a24]  seqan::ClassTest::forceFail(char const*, int, char const*, ...) + 0x110\r\n  7        [0x206ac264]  void* seqan::mapFileSegment<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int>, long long, long long, seqan::FileMappingMode>(seqan::FileMapping<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> >&, long long, long long, seqan::FileMappingMode) + 0x248\r\n  8        [0x206a8140]  void* seqan::mapFileSegment<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int>, long long, long long>(seqan::FileMapping<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> >&, long long, long long) + 0x48\r\n  9        [0x206a2fa4]  bool seqan::_readFilePage<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> >, seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int>, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> > > >(seqan::FilePageTable<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> > >&, seqan::FileMapping<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> >&, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> > >&) + 0x194\r\n 10        [0x206a21d0]  bool seqan::_processFilePage<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> >, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> > >, seqan::True>(seqan::FilePageTable<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> > >&, seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> > >&, seqan::True const&) + 0x90\r\n 11        [0x206cfe64]  seqan::FilePage<char, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> > >& seqan::fetchFilePage<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> >, long long, unsigned int>(seqan::FilePageTable<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> > >&, long long, unsigned int, bool) + 0xf0\r\n 12        [0x206cea9c]  seqan::FileStreamBuffer<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> > >::_nextReadPage() + 0x16c\r\n 13        [0x206ca174]  seqan::FileStreamBuffer<char, seqan::Tag<seqan::Input_>, seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> > >::underflow() + 0x94\r\n 14        [0x20333e0c]  std::basic_streambuf<char, std::char_traits<char> >::xsgetn(char*, int) + 0x12c\r\n 15        [0x202fef88]  std::istream::read(char*, int) + 0xa8\r\n 16        [0x206681c4]  FileStreamTest__ReadLarge<seqan::MMap<seqan::MMapConfig<seqan::File<seqan::Sync<void> >, unsigned int> > >::runTest() + 0x220\r\n 17        [0x20618310]  seqan::TestSystem::runAll() + 0x1d4\r\n 18        [0x206156a0]  main + 0x30\r\n```\r\n- [x] test_test_tabix_io (Failed)\r\n```\r\nUnexpected exception of type std::ios_base::failure[abi:cxx11]; message: Invalid BGZF block header.: iostream error\r\ntest_tabix_io_read_indexed_vcf FAILED\r\n```\r\n- [ ] test_demo_tutorial_file_io_overview_example1 (Failed)\r\n```\r\nRunning /«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/demo_tutorial_file_io_overview_example1.\r\nERROR: Return code of /«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/demo_tutorial_file_io_overview_example1 was -6.\r\n```\r\n- [ ] test_demo_tutorial_file_io_overview_solution1 (Failed)\r\n```\r\nRunning /«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/demo_tutorial_file_io_overview_solution1.\r\nERROR: Return code of /«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/demo_tutorial_file_io_overview_solution1 was -6.\r\n```\r\n- [ ] test_demo_tutorial_file_io_overview_solution2 (Failed)\r\n```\r\nRunning /«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/demo_tutorial_file_io_overview_solution2.\r\nERROR: Return code of /«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/demo_tutorial_file_io_overview_solution2 was -6.\r\n```\r\n- [ ] test_demo_tutorial_file_io_overview_solution3 (Failed)\r\n```\r\nRunning /«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/demo_tutorial_file_io_overview_solution3.\r\nERROR: Return code of /«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/demo_tutorial_file_io_overview_solution3 was -6.\r\n```\r\n- [ ] test_demo_tutorial_sam_and_bam_io_example7 (Failed)\r\n```\r\nRunning /«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/demo_tutorial_sam_and_bam_io_example7.\r\nERROR: Return code of /«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/demo_tutorial_sam_and_bam_io_example7 was 1.\r\n```\r\n- [ ] app_test_ngs_roi (Failed)\r\n```\r\n--- stdout begin --\r\nReturn code of command \"/«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/bam2roi --strand-specific -if /«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/ngs_roi/tests/micro_rna_sorted_2l.bam -of /tmp/tmp8Bo40t/out_mrna_2l_ss.roi\" was -6.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n--- stdout begin --\r\nReturn code of command \"/«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/bam2roi -if /«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/ngs_roi/tests/micro_rna_sorted_2l.bam -of /tmp/tmp8Bo40t/out_mrna_2l.roi\" was -6.\r\n\r\n--- stdout end --\r\n-- stderr begin --\r\n\r\n-- stderr end --\r\n[…]\r\nbam2roi --strand-specific -if /«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/ngs_roi/tests/micro_rna_sorted_2l.bam -of /tmp/tmp8Bo40t/out_mrna_2l_ss.roi FAILED\r\nbam2roi -if /«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/ngs_roi/tests/micro_rna_sorted_2l.bam -of /tmp/tmp8Bo40t/out_mrna_2l.roi FAILED\r\n```\r\n- [ ] app_test_samcat (Failed)\r\n```\r\nError when trying to compare /«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/samcat/tests/ex1_merged.bam to /tmp/tmpVXr7h1/ex1_merged.bam: CRC check failed 0xb135639aL != 0x9a6335b1L <type 'exceptions.IOError'>\r\n```\r\n- [ ] app_test_yara (Failed)\r\n```\r\nmd5(/«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome.txt.size) == 77e90ee2d38ac9ae249e1d34bebb864c != 86b97158404aa322a6e21ba3b3f068f4 == md5(/tmp/tmpSzCZW4/adeno-genome.txt.size)\r\nmd5(/«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome.txt.limits) == 00f4723c47a032a19a625a5fd0aaa920 != b9a441c75b9ff8972edb6f2b7eb35869 == md5(/tmp/tmpSzCZW4/adeno-genome.txt.limits)\r\nmd5(/«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome.txt.concat) == e4ced945f802f27e059bb19428b926c0 != 878990e71b9969d84794b7b11c52e695 == md5(/tmp/tmpSzCZW4/adeno-genome.txt.concat)\r\nmd5(/«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome.sa.val) == 3620fe89c8b3d6f633d8c98bff282ff3 != 47e9b2d64aa32ec9193522a048ccd12f == md5(/tmp/tmpSzCZW4/adeno-genome.sa.val)\r\nmd5(/«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome.sa.len) == e48919d8193c5d31a8672baa8cd09924 != 0aa49787b9e067d06baa918e9bdc5fab == md5(/tmp/tmpSzCZW4/adeno-genome.sa.len)\r\nmd5(/«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome.sa.ind) == 8a4d9eec18a2290330a81b8bb8b09af0 != ddf405860d6f699b5d91dc9a03293037 == md5(/tmp/tmpSzCZW4/adeno-genome.sa.ind)\r\nmd5(/«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome.rid.limits) == 03e3c067c21080ea2ec6dedeed7de03b != af367076352443edfbe9acd7951755bc == md5(/tmp/tmpSzCZW4/adeno-genome.rid.limits)\r\nmd5(/«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome.lf.pst) == 3f06481dcdc72801826caceae2982de2 != 3ed8d4d1025d2e740d51a5a9f2a41f30 == md5(/tmp/tmpSzCZW4/adeno-genome.lf.pst)\r\nmd5(/«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome.lf.drv) == 046f1e35be70da83b057e0a3d8a10a66 != d5e2bc49e202e5427889f0a4ad684787 == md5(/tmp/tmpSzCZW4/adeno-genome.lf.drv)\r\nmd5(/«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome.lf.drp) == 8a00080cae8aade040af1c941493bef9 != 10c9bcf2ec72bde87f1e5ade5d9093b4 == md5(/tmp/tmpSzCZW4/adeno-genome.lf.drp)\r\n--- stdout begin --\r\nReturn code of command \"/«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/yara_mapper /«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome /«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/input/adeno-reads_1.fa -o /tmp/tmpSzCZW4/adeno-reads_1.t1.sam --threads 1\" was 1.\r\nTraceback (most recent call last):\r\n  File \"/«BUILDDIR»/seqan2-2.3.2+dfsg2/util/py_lib/seqan/app_tests.py\", line 248, in runTest\r\n    print >>sys.stderr, stdout_file.read()\r\nAttributeError: 'int' object has no attribute 'read'\r\nERROR (when executing \"/«BUILDDIR»/seqan2-2.3.2+dfsg2/obj-powerpc-linux-gnu/bin/yara_mapper /«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/gold/adeno-genome /«BUILDDIR»/seqan2-2.3.2+dfsg2/apps/yara/tests/input/adeno-reads_1.fa -o /tmp/tmpSzCZW4/adeno-reads_1.t1.sam --threads 1\"): 'int' object has no attribute 'read'\r\n```\r\n\r\nAs with s390x there are new errors:\r\n- [ ] test_demo_dox_bam_io_bam_tags_dict\r\n- [ ] test_demo_tutorial_sam_and_bam_io_example1\r\n- [ ] test_demo_tutorial_sam_and_bam_io_solution1\r\n- [ ] test_demo_tutorial_sam_and_bam_io_solution3\r\n- [ ] app_test_mason2\r\n- [ ] app_test_rabema\r\n- [ ] app_test_seqcons2\r\n- [ ] app_test_snp_store\r\n"},"comment":{"url":"https://api.github.com/repos/seqan/seqan/issues/comments/339885257","html_url":"https://github.com/seqan/seqan/issues/2136#issuecomment-339885257","issue_url":"https://api.github.com/repos/seqan/seqan/issues/2136","id":339885257,"user":{"login":"mr-c","id":1330696,"avatar_url":"https://avatars3.githubusercontent.com/u/1330696?v=4","gravatar_id":"","url":"https://api.github.com/users/mr-c","html_url":"https://github.com/mr-c","followers_url":"https://api.github.com/users/mr-c/followers","following_url":"https://api.github.com/users/mr-c/following{/other_user}","gists_url":"https://api.github.com/users/mr-c/gists{/gist_id}","starred_url":"https://api.github.com/users/mr-c/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mr-c/subscriptions","organizations_url":"https://api.github.com/users/mr-c/orgs","repos_url":"https://api.github.com/users/mr-c/repos","events_url":"https://api.github.com/users/mr-c/events{/privacy}","received_events_url":"https://api.github.com/users/mr-c/received_events","type":"User","site_admin":false},"created_at":"2017-10-27T06:32:35Z","updated_at":"2017-10-27T06:32:35Z","author_association":"CONTRIBUTOR","body":"Test overview updated (without log excepts) for https://buildd.debian.org/status/fetch.php?pkg=seqan2&arch=powerpc&ver=2.3.2.000platform-issues2-206d1f7%2Bdfsg-1&stamp=1509038213&raw=0"}}
{"actor":{"display_login":"mr-c"}}