{"action":"created","issue":{"url":"https://api.github.com/repos/crux-toolkit/crux-toolkit/issues/382","repository_url":"https://api.github.com/repos/crux-toolkit/crux-toolkit","labels_url":"https://api.github.com/repos/crux-toolkit/crux-toolkit/issues/382/labels{/name}","comments_url":"https://api.github.com/repos/crux-toolkit/crux-toolkit/issues/382/comments","events_url":"https://api.github.com/repos/crux-toolkit/crux-toolkit/issues/382/events","html_url":"https://github.com/crux-toolkit/crux-toolkit/issues/382","id":222088198,"number":382,"title":"Allow multiple MS2 input files for search-for-xlinks","user":{"login":"wsnoble","id":22529318,"avatar_url":"https://avatars1.githubusercontent.com/u/22529318?v=3","gravatar_id":"","url":"https://api.github.com/users/wsnoble","html_url":"https://github.com/wsnoble","followers_url":"https://api.github.com/users/wsnoble/followers","following_url":"https://api.github.com/users/wsnoble/following{/other_user}","gists_url":"https://api.github.com/users/wsnoble/gists{/gist_id}","starred_url":"https://api.github.com/users/wsnoble/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wsnoble/subscriptions","organizations_url":"https://api.github.com/users/wsnoble/orgs","repos_url":"https://api.github.com/users/wsnoble/repos","events_url":"https://api.github.com/users/wsnoble/events{/privacy}","received_events_url":"https://api.github.com/users/wsnoble/received_events","type":"User","site_admin":false},"labels":[{"id":452414836,"url":"https://api.github.com/repos/crux-toolkit/crux-toolkit/labels/crux-users","name":"crux-users","color":"ededed","default":false},{"id":452386702,"url":"https://api.github.com/repos/crux-toolkit/crux-toolkit/labels/enhancement","name":"enhancement","color":"84b6eb","default":true},{"id":552361449,"url":"https://api.github.com/repos/crux-toolkit/crux-toolkit/labels/search-for-xlinks","name":"search-for-xlinks","color":"c5def5","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2017-04-17T08:12:11Z","updated_at":"2017-04-27T08:51:41Z","closed_at":null,"body":"Currently, search-for-xlinks only works for a single MS2 file at a time.  We could use the same mechanism as Tide to handle multiple input files.\r\n"},"comment":{"url":"https://api.github.com/repos/crux-toolkit/crux-toolkit/issues/comments/297653692","html_url":"https://github.com/crux-toolkit/crux-toolkit/issues/382#issuecomment-297653692","issue_url":"https://api.github.com/repos/crux-toolkit/crux-toolkit/issues/382","id":297653692,"user":{"login":"wsnoble","id":22529318,"avatar_url":"https://avatars1.githubusercontent.com/u/22529318?v=3","gravatar_id":"","url":"https://api.github.com/users/wsnoble","html_url":"https://github.com/wsnoble","followers_url":"https://api.github.com/users/wsnoble/followers","following_url":"https://api.github.com/users/wsnoble/following{/other_user}","gists_url":"https://api.github.com/users/wsnoble/gists{/gist_id}","starred_url":"https://api.github.com/users/wsnoble/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wsnoble/subscriptions","organizations_url":"https://api.github.com/users/wsnoble/orgs","repos_url":"https://api.github.com/users/wsnoble/repos","events_url":"https://api.github.com/users/wsnoble/events{/privacy}","received_events_url":"https://api.github.com/users/wsnoble/received_events","type":"User","site_admin":false},"created_at":"2017-04-27T08:51:41Z","updated_at":"2017-04-27T08:51:41Z","body":"Actually, I just noticed one small thing. When compute percentages of spectra skipped, the numerator seems to be over all files and the denominator is only over the current file (see 111% below). It would be good to fix this.\r\n\r\nINFO: Assigning index 0 to ../2017-04-19new-data/mewing_D1607_102.ms2.\r\nINFO: Skipped 761 (86.8721%) spectra with 0 candidates.\r\nINFO: Skipped 0 (0%) spectra with too few peaks.\r\nINFO: Loading spectra ../2017-04-19new-data/mewing_D1607_103.ms2.\r\nINFO: Beginning search.\r\nINFO: Assigning index 1 to ../2017-04-19new-data/mewing_D1607_103.ms2.\r\nINFO: 1000 spectrum-charge combinations searched, 38% complete\r\nINFO: 2000 spectrum-charge combinations searched, 76% complete\r\n**INFO: Skipped 2956 (111.885%) spectra with 0 candidates.**\r\nINFO: Skipped 0 (0%) spectra with too few peaks.\r\n"}}
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