{"action":"created","issue":{"url":"https://api.github.com/repos/GMOD/Apollo/issues/1707","repository_url":"https://api.github.com/repos/GMOD/Apollo","labels_url":"https://api.github.com/repos/GMOD/Apollo/issues/1707/labels{/name}","comments_url":"https://api.github.com/repos/GMOD/Apollo/issues/1707/comments","events_url":"https://api.github.com/repos/GMOD/Apollo/issues/1707/events","html_url":"https://github.com/GMOD/Apollo/issues/1707","id":244118466,"number":1707,"title":"building commit 22fd2d6b9cf122023aba7d4384cf23ceff6d5940 fails","user":{"login":"childers","id":421248,"avatar_url":"https://avatars3.githubusercontent.com/u/421248?v=4","gravatar_id":"","url":"https://api.github.com/users/childers","html_url":"https://github.com/childers","followers_url":"https://api.github.com/users/childers/followers","following_url":"https://api.github.com/users/childers/following{/other_user}","gists_url":"https://api.github.com/users/childers/gists{/gist_id}","starred_url":"https://api.github.com/users/childers/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/childers/subscriptions","organizations_url":"https://api.github.com/users/childers/orgs","repos_url":"https://api.github.com/users/childers/repos","events_url":"https://api.github.com/users/childers/events{/privacy}","received_events_url":"https://api.github.com/users/childers/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":13,"created_at":"2017-07-19T17:38:32Z","updated_at":"2017-07-19T18:14:04Z","closed_at":null,"body":"* Search [mailing list](http://gmod.827538.n3.nabble.com/Apollo-f815553.html) or email list ```apollo@lists.lbl.gov``` if a general setup question. \r\n\r\n* Provide what you were doing and what you expected to see.  Screenshots, directory, config files are a plus if relevant.\r\nTrying to build mater failed very fast.  I expected to see it succeed. It looks like there is still soem temporary code specific to the @nathandunn  local system.\r\n\r\nSTDERR from terminal:\r\n```shell\r\n $ ./apollo deploy\r\njavac 1.8.0_112 found\r\njavac installed\r\nJDK 1.8 found: javac 1.8.0_112\r\n\r\nFAILURE: Build failed with an exception.\r\n\r\n* Where:\r\nBuild file '/apollo_master/build.gradle' line: 80\r\n\r\n* What went wrong:\r\nA problem occurred evaluating root project 'nathanApolloMaster'.\r\n> startup failed:\r\n  script15004844661701540049598.groovy: 176: expecting ']', found 'tmp_dir' @ line 176, column 7.\r\n           tmp_dir: \"/opt/apollo/tmp\" //optional param, uses system tmp dir by default\r\n           ^\r\n  \r\n  1 error\r\n\r\n\r\n* Try:\r\nRun with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output.\r\n\r\n\r\nBUILD FAILED\r\n\r\nTotal time: 5.106 secs\r\n***************************************\r\nNOTE: Please set the memory for your servlet container (tomcat, jetty, etc.) or Apollo may not start correctly: http://genomearchitect.readthedocs.io/en/latest/Troubleshooting.html#suggested-tomcat-memory-settings\r\n***************************************\r\n```\r\nRunning with --stacktrace gave the same output.  I was able to build and test successfully yesterday.\r\n \r\n* Provide the javascript console log output generated from the action. \r\nN/A \r\n* Provide the server log output generated from the action (typically ```catalina.out```).\r\nN/A\r\n"},"comment":{"url":"https://api.github.com/repos/GMOD/Apollo/issues/comments/316471828","html_url":"https://github.com/GMOD/Apollo/issues/1707#issuecomment-316471828","issue_url":"https://api.github.com/repos/GMOD/Apollo/issues/1707","id":316471828,"user":{"login":"childers","id":421248,"avatar_url":"https://avatars3.githubusercontent.com/u/421248?v=4","gravatar_id":"","url":"https://api.github.com/users/childers","html_url":"https://github.com/childers","followers_url":"https://api.github.com/users/childers/followers","following_url":"https://api.github.com/users/childers/following{/other_user}","gists_url":"https://api.github.com/users/childers/gists{/gist_id}","starred_url":"https://api.github.com/users/childers/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/childers/subscriptions","organizations_url":"https://api.github.com/users/childers/orgs","repos_url":"https://api.github.com/users/childers/repos","events_url":"https://api.github.com/users/childers/events{/privacy}","received_events_url":"https://api.github.com/users/childers/received_events","type":"User","site_admin":false},"created_at":"2017-07-19T18:14:04Z","updated_at":"2017-07-19T18:14:04Z","body":"Commenting this line out causes ```./apollo deploy``` to work\r\n```shell \r\n  gff3.source= \".\" bootstrap = false\r\n```"}}
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