{"action":"closed","issue":{"url":"https://api.github.com/repos/fidelram/deepTools/issues/583","repository_url":"https://api.github.com/repos/fidelram/deepTools","labels_url":"https://api.github.com/repos/fidelram/deepTools/issues/583/labels{/name}","comments_url":"https://api.github.com/repos/fidelram/deepTools/issues/583/comments","events_url":"https://api.github.com/repos/fidelram/deepTools/issues/583/events","html_url":"https://github.com/fidelram/deepTools/issues/583","id":250898190,"number":583,"title":"Further speed up bigWig creation","user":{"login":"dpryan79","id":6399000,"avatar_url":"https://avatars3.githubusercontent.com/u/6399000?v=4","gravatar_id":"","url":"https://api.github.com/users/dpryan79","html_url":"https://github.com/dpryan79","followers_url":"https://api.github.com/users/dpryan79/followers","following_url":"https://api.github.com/users/dpryan79/following{/other_user}","gists_url":"https://api.github.com/users/dpryan79/gists{/gist_id}","starred_url":"https://api.github.com/users/dpryan79/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dpryan79/subscriptions","organizations_url":"https://api.github.com/users/dpryan79/orgs","repos_url":"https://api.github.com/users/dpryan79/repos","events_url":"https://api.github.com/users/dpryan79/events{/privacy}","received_events_url":"https://api.github.com/users/dpryan79/received_events","type":"User","site_admin":false},"labels":[{"id":46870951,"url":"https://api.github.com/repos/fidelram/deepTools/labels/enhancement","name":"enhancement","color":"84b6eb","default":true}],"state":"closed","locked":false,"assignee":{"login":"dpryan79","id":6399000,"avatar_url":"https://avatars3.githubusercontent.com/u/6399000?v=4","gravatar_id":"","url":"https://api.github.com/users/dpryan79","html_url":"https://github.com/dpryan79","followers_url":"https://api.github.com/users/dpryan79/followers","following_url":"https://api.github.com/users/dpryan79/following{/other_user}","gists_url":"https://api.github.com/users/dpryan79/gists{/gist_id}","starred_url":"https://api.github.com/users/dpryan79/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dpryan79/subscriptions","organizations_url":"https://api.github.com/users/dpryan79/orgs","repos_url":"https://api.github.com/users/dpryan79/repos","events_url":"https://api.github.com/users/dpryan79/events{/privacy}","received_events_url":"https://api.github.com/users/dpryan79/received_events","type":"User","site_admin":false},"assignees":[{"login":"dpryan79","id":6399000,"avatar_url":"https://avatars3.githubusercontent.com/u/6399000?v=4","gravatar_id":"","url":"https://api.github.com/users/dpryan79","html_url":"https://github.com/dpryan79","followers_url":"https://api.github.com/users/dpryan79/followers","following_url":"https://api.github.com/users/dpryan79/following{/other_user}","gists_url":"https://api.github.com/users/dpryan79/gists{/gist_id}","starred_url":"https://api.github.com/users/dpryan79/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dpryan79/subscriptions","organizations_url":"https://api.github.com/users/dpryan79/orgs","repos_url":"https://api.github.com/users/dpryan79/repos","events_url":"https://api.github.com/users/dpryan79/events{/privacy}","received_events_url":"https://api.github.com/users/dpryan79/received_events","type":"User","site_admin":false}],"milestone":{"url":"https://api.github.com/repos/fidelram/deepTools/milestones/10","html_url":"https://github.com/fidelram/deepTools/milestone/10","labels_url":"https://api.github.com/repos/fidelram/deepTools/milestones/10/labels","id":2501175,"number":10,"title":"2.6.0","description":"Issues for the 2.6.0 release, which will presumably be out in the latter part of 2017.","creator":{"login":"dpryan79","id":6399000,"avatar_url":"https://avatars3.githubusercontent.com/u/6399000?v=4","gravatar_id":"","url":"https://api.github.com/users/dpryan79","html_url":"https://github.com/dpryan79","followers_url":"https://api.github.com/users/dpryan79/followers","following_url":"https://api.github.com/users/dpryan79/following{/other_user}","gists_url":"https://api.github.com/users/dpryan79/gists{/gist_id}","starred_url":"https://api.github.com/users/dpryan79/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dpryan79/subscriptions","organizations_url":"https://api.github.com/users/dpryan79/orgs","repos_url":"https://api.github.com/users/dpryan79/repos","events_url":"https://api.github.com/users/dpryan79/events{/privacy}","received_events_url":"https://api.github.com/users/dpryan79/received_events","type":"User","site_admin":false},"open_issues":1,"closed_issues":14,"state":"open","created_at":"2017-05-04T21:01:52Z","updated_at":"2017-08-17T14:02:05Z","due_on":null,"closed_at":null},"comments":1,"created_at":"2017-08-17T10:28:47Z","updated_at":"2017-08-17T14:02:05Z","closed_at":"2017-08-17T14:02:05Z","body":"This is mostly a reminder to me. It's really slow to iterate over each line in the bedGraph and add an entry in the bigWig file one at a time. It turns out that it's MUCH faster to do this either per-chromosome or perhaps in batches of 100000 entries (whichever comes first). This makes sense as pyBigWig can then take better advantage of the chunks."}}
{"actor":{"display_login":"dpryan79"}}