{"action":"created","issue":{"url":"https://api.github.com/repos/jts/nanopolish/issues/139","repository_url":"https://api.github.com/repos/jts/nanopolish","labels_url":"https://api.github.com/repos/jts/nanopolish/issues/139/labels{/name}","comments_url":"https://api.github.com/repos/jts/nanopolish/issues/139/comments","events_url":"https://api.github.com/repos/jts/nanopolish/issues/139/events","html_url":"https://github.com/jts/nanopolish/issues/139","id":227938705,"number":139,"title":"Error finding model in nanopolish call-methylation","user":{"login":"josephhughes","id":359553,"avatar_url":"https://avatars3.githubusercontent.com/u/359553?v=3","gravatar_id":"","url":"https://api.github.com/users/josephhughes","html_url":"https://github.com/josephhughes","followers_url":"https://api.github.com/users/josephhughes/followers","following_url":"https://api.github.com/users/josephhughes/following{/other_user}","gists_url":"https://api.github.com/users/josephhughes/gists{/gist_id}","starred_url":"https://api.github.com/users/josephhughes/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/josephhughes/subscriptions","organizations_url":"https://api.github.com/users/josephhughes/orgs","repos_url":"https://api.github.com/users/josephhughes/repos","events_url":"https://api.github.com/users/josephhughes/events{/privacy}","received_events_url":"https://api.github.com/users/josephhughes/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2017-05-11T09:57:18Z","updated_at":"2017-05-12T10:54:02Z","closed_at":null,"body":"Dear Jared,\r\n\r\nI'm running nanopolish call-methylation with the following command:\r\n\r\n`~/bin/nanopolish/nanopolish call-methylation -v --progress -t 8 -r all.fa -g ref.fa -b reads.sorted.bam > methylation.tsv`\r\n\r\nI've tried copying the models to the folder with the bam file is, I have also tried running the command in the directory with nanopolish but always get the same error message. \r\n\r\n```\r\nError: cannot find model with key r9_250bps.cpg.6mer.complement.pop2\r\nHDF5-DIAG: Error detected in HDF5 (1.8.14) thread 139711169112064:\r\n  #000: H5O.c line 240 in H5Oopen(): not a location\r\n    major: Invalid arguments to routine\r\n    minor: Inappropriate type\r\n  #001: H5Gloc.c line 173 in H5G_loc(): invalid file ID\r\n    major: Invalid arguments to routine\r\n    minor: Bad value\r\nHDF5-DIAG: Error detected in HDF5 (1.8.14) thread 139711169112064\r\n```\r\nAny advice would be welcome.\r\n\r\nCheers,\r\nJoseph\r\n"},"comment":{"url":"https://api.github.com/repos/jts/nanopolish/issues/comments/301046765","html_url":"https://github.com/jts/nanopolish/issues/139#issuecomment-301046765","issue_url":"https://api.github.com/repos/jts/nanopolish/issues/139","id":301046765,"user":{"login":"josephhughes","id":359553,"avatar_url":"https://avatars3.githubusercontent.com/u/359553?v=3","gravatar_id":"","url":"https://api.github.com/users/josephhughes","html_url":"https://github.com/josephhughes","followers_url":"https://api.github.com/users/josephhughes/followers","following_url":"https://api.github.com/users/josephhughes/following{/other_user}","gists_url":"https://api.github.com/users/josephhughes/gists{/gist_id}","starred_url":"https://api.github.com/users/josephhughes/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/josephhughes/subscriptions","organizations_url":"https://api.github.com/users/josephhughes/orgs","repos_url":"https://api.github.com/users/josephhughes/repos","events_url":"https://api.github.com/users/josephhughes/events{/privacy}","received_events_url":"https://api.github.com/users/josephhughes/received_events","type":"User","site_admin":false},"created_at":"2017-05-12T10:54:02Z","updated_at":"2017-05-12T10:54:02Z","body":"An example fast5 file.\r\n\r\n\r\n[vgb_20170201_FNFAB45374_MN19940_sequencing_run_Toledo_DeltaMerlin_010217_3_98936_ch96_read2864_strand.fast5.zip](https://github.com/jts/nanopolish/files/995856/vgb_20170201_FNFAB45374_MN19940_sequencing_run_Toledo_DeltaMerlin_010217_3_98936_ch96_read2864_strand.fast5.zip)\r\n"}}
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