{"action":"created","issue":{"url":"https://api.github.com/repos/jbloomlab/dms_tools2/issues/2","repository_url":"https://api.github.com/repos/jbloomlab/dms_tools2","labels_url":"https://api.github.com/repos/jbloomlab/dms_tools2/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/jbloomlab/dms_tools2/issues/2/comments","events_url":"https://api.github.com/repos/jbloomlab/dms_tools2/issues/2/events","html_url":"https://github.com/jbloomlab/dms_tools2/issues/2","id":263193472,"number":2,"title":"mask site in `dms2_bcsubamp`","user":{"login":"Haddox","id":4372993,"avatar_url":"https://avatars1.githubusercontent.com/u/4372993?v=4","gravatar_id":"","url":"https://api.github.com/users/Haddox","html_url":"https://github.com/Haddox","followers_url":"https://api.github.com/users/Haddox/followers","following_url":"https://api.github.com/users/Haddox/following{/other_user}","gists_url":"https://api.github.com/users/Haddox/gists{/gist_id}","starred_url":"https://api.github.com/users/Haddox/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Haddox/subscriptions","organizations_url":"https://api.github.com/users/Haddox/orgs","repos_url":"https://api.github.com/users/Haddox/repos","events_url":"https://api.github.com/users/Haddox/events{/privacy}","received_events_url":"https://api.github.com/users/Haddox/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2017-10-05T16:44:43Z","updated_at":"2017-10-06T02:54:47Z","closed_at":"2017-10-06T02:54:47Z","author_association":"CONTRIBUTOR","body":"It might be nice if you could mask certain sites when running `dms2_bcsubamp`. In my case, there are regions of env I didn't mutagenize. I need to align to the full-length gene so that sites are numbered appropriately, but this skews plots showing gene-wide mutation sampling and frequency. Masking these unmutated regions could solve this problem, while allowing you to retain the correct numbering scheme."},"comment":{"url":"https://api.github.com/repos/jbloomlab/dms_tools2/issues/comments/334645366","html_url":"https://github.com/jbloomlab/dms_tools2/issues/2#issuecomment-334645366","issue_url":"https://api.github.com/repos/jbloomlab/dms_tools2/issues/2","id":334645366,"user":{"login":"jbloom","id":1906801,"avatar_url":"https://avatars1.githubusercontent.com/u/1906801?v=4","gravatar_id":"","url":"https://api.github.com/users/jbloom","html_url":"https://github.com/jbloom","followers_url":"https://api.github.com/users/jbloom/followers","following_url":"https://api.github.com/users/jbloom/following{/other_user}","gists_url":"https://api.github.com/users/jbloom/gists{/gist_id}","starred_url":"https://api.github.com/users/jbloom/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jbloom/subscriptions","organizations_url":"https://api.github.com/users/jbloom/orgs","repos_url":"https://api.github.com/users/jbloom/repos","events_url":"https://api.github.com/users/jbloom/events{/privacy}","received_events_url":"https://api.github.com/users/jbloom/received_events","type":"User","site_admin":false},"created_at":"2017-10-06T02:54:47Z","updated_at":"2017-10-06T02:54:47Z","author_association":"OWNER","body":"Added in this commit:\r\nhttps://github.com/jbloomlab/dms_tools2/commit/0537a9de8bb35a12cf8c00339a5783f3e26e8ccd\r\n\r\nThe new option is `--sitemask` to `dms2_bcsubamp` / `dms2_batch_bcsubamp`."}}
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