{"action":"created","issue":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/2692","repository_url":"https://api.github.com/repos/broadinstitute/gatk","labels_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2692/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2692/comments","events_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2692/events","html_url":"https://github.com/broadinstitute/gatk/pull/2692","id":227489092,"number":2692,"title":"Print a curated set of important HTSJDK settings at startup, instead of all HTSJDK 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were dumping all HTSJDK defaults to our logger, even though many settings are not\r\nreally relevant to GATK\r\n\r\nResolves #2691"},"comment":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/comments/300299148","html_url":"https://github.com/broadinstitute/gatk/pull/2692#issuecomment-300299148","issue_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2692","id":300299148,"user":{"login":"codecov-io","id":8655789,"avatar_url":"https://avatars3.githubusercontent.com/u/8655789?v=3","gravatar_id":"","url":"https://api.github.com/users/codecov-io","html_url":"https://github.com/codecov-io","followers_url":"https://api.github.com/users/codecov-io/followers","following_url":"https://api.github.com/users/codecov-io/following{/other_user}","gists_url":"https://api.github.com/users/codecov-io/gists{/gist_id}","starred_url":"https://api.github.com/users/codecov-io/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/codecov-io/subscriptions","organizations_url":"https://api.github.com/users/codecov-io/orgs","repos_url":"https://api.github.com/users/codecov-io/repos","events_url":"https://api.github.com/users/codecov-io/events{/privacy}","received_events_url":"https://api.github.com/users/codecov-io/received_events","type":"User","site_admin":false},"created_at":"2017-05-09T20:57:48Z","updated_at":"2017-05-09T20:57:48Z","body":"# [Codecov](https://codecov.io/gh/broadinstitute/gatk/pull/2692?src=pr&el=h1) Report\n> Merging [#2692](https://codecov.io/gh/broadinstitute/gatk/pull/2692?src=pr&el=desc) into [master](https://codecov.io/gh/broadinstitute/gatk/commit/b8d32ee927aa23f10835a7bf6fda6f2e55f72353?src=pr&el=desc) will **increase** coverage by `0.003%`.\n> The diff coverage is `100%`.\n\n\n```diff\n@@               Coverage Diff               @@\n##              master     #2692       +/-   ##\n===============================================\n+ Coverage     77.619%   77.622%   +0.003%     \n  Complexity     11351     11351               \n===============================================\n  Files            774       774               \n  Lines          41125     41130        +5     \n  Branches        7166      7166               \n===============================================\n+ Hits           31921     31926        +5     \n  Misses          6499      6499               \n  Partials        2705      2705\n```\n\n\n\n\n| [Impacted Files](https://codecov.io/gh/broadinstitute/gatk/pull/2692?src=pr&el=tree) | Coverage Δ | Complexity Δ | |\n|---|---|---|---|\n| [...stitute/hellbender/cmdline/CommandLineProgram.java](https://codecov.io/gh/broadinstitute/gatk/pull/2692?src=pr&el=tree#diff-c3JjL21haW4vamF2YS9vcmcvYnJvYWRpbnN0aXR1dGUvaGVsbGJlbmRlci9jbWRsaW5lL0NvbW1hbmRMaW5lUHJvZ3JhbS5qYXZh) | `93.617% <100%> (+0.359%)` | `29 <1> (ø)` | :arrow_down: |\n"}}
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