{"action":"created","issue":{"url":"https://api.github.com/repos/jacobwindsor/pubchem-ranker/issues/6","repository_url":"https://api.github.com/repos/jacobwindsor/pubchem-ranker","labels_url":"https://api.github.com/repos/jacobwindsor/pubchem-ranker/issues/6/labels{/name}","comments_url":"https://api.github.com/repos/jacobwindsor/pubchem-ranker/issues/6/comments","events_url":"https://api.github.com/repos/jacobwindsor/pubchem-ranker/issues/6/events","html_url":"https://github.com/jacobwindsor/pubchem-ranker/issues/6","id":213609591,"number":6,"title":"Integrate other databases","user":{"login":"jacobwindsor","id":5579270,"avatar_url":"https://avatars1.githubusercontent.com/u/5579270?v=3","gravatar_id":"","url":"https://api.github.com/users/jacobwindsor","html_url":"https://github.com/jacobwindsor","followers_url":"https://api.github.com/users/jacobwindsor/followers","following_url":"https://api.github.com/users/jacobwindsor/following{/other_user}","gists_url":"https://api.github.com/users/jacobwindsor/gists{/gist_id}","starred_url":"https://api.github.com/users/jacobwindsor/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jacobwindsor/subscriptions","organizations_url":"https://api.github.com/users/jacobwindsor/orgs","repos_url":"https://api.github.com/users/jacobwindsor/repos","events_url":"https://api.github.com/users/jacobwindsor/events{/privacy}","received_events_url":"https://api.github.com/users/jacobwindsor/received_events","type":"User","site_admin":false},"labels":[{"id":394345715,"url":"https://api.github.com/repos/jacobwindsor/pubchem-ranker/labels/enhancement","name":"enhancement","color":"84b6eb","default":true},{"id":394345716,"url":"https://api.github.com/repos/jacobwindsor/pubchem-ranker/labels/help%20wanted","name":"help wanted","color":"128A0C","default":true},{"id":394345718,"url":"https://api.github.com/repos/jacobwindsor/pubchem-ranker/labels/question","name":"question","color":"cc317c","default":true}],"state":"open","locked":false,"assignee":{"login":"jacobwindsor","id":5579270,"avatar_url":"https://avatars1.githubusercontent.com/u/5579270?v=3","gravatar_id":"","url":"https://api.github.com/users/jacobwindsor","html_url":"https://github.com/jacobwindsor","followers_url":"https://api.github.com/users/jacobwindsor/followers","following_url":"https://api.github.com/users/jacobwindsor/following{/other_user}","gists_url":"https://api.github.com/users/jacobwindsor/gists{/gist_id}","starred_url":"https://api.github.com/users/jacobwindsor/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jacobwindsor/subscriptions","organizations_url":"https://api.github.com/users/jacobwindsor/orgs","repos_url":"https://api.github.com/users/jacobwindsor/repos","events_url":"https://api.github.com/users/jacobwindsor/events{/privacy}","received_events_url":"https://api.github.com/users/jacobwindsor/received_events","type":"User","site_admin":false},"assignees":[{"login":"jacobwindsor","id":5579270,"avatar_url":"https://avatars1.githubusercontent.com/u/5579270?v=3","gravatar_id":"","url":"https://api.github.com/users/jacobwindsor","html_url":"https://github.com/jacobwindsor","followers_url":"https://api.github.com/users/jacobwindsor/followers","following_url":"https://api.github.com/users/jacobwindsor/following{/other_user}","gists_url":"https://api.github.com/users/jacobwindsor/gists{/gist_id}","starred_url":"https://api.github.com/users/jacobwindsor/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jacobwindsor/subscriptions","organizations_url":"https://api.github.com/users/jacobwindsor/orgs","repos_url":"https://api.github.com/users/jacobwindsor/repos","events_url":"https://api.github.com/users/jacobwindsor/events{/privacy}","received_events_url":"https://api.github.com/users/jacobwindsor/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2017-03-12T14:54:43Z","updated_at":"2017-03-27T07:50:16Z","closed_at":null,"body":"Currently, this only ranks through PUBCHEM's API. It would be nice to use other APIs to rank compounds. Then probably rename this project too. We would have to discuss how other databases are implemented. I.e. simply rank by the total number of \"hits\" across all databases, or allow filtering of search parameters, who knows. Probably the algorithm needs to be a bit more complex to get an accurate indication of the amount of data available for each compound in the dataset\r\n\r\nOther databases (please add): \r\n\r\n- Google scholar (would have to pay a little bit)\r\n- Scifinder (don't think it's possible)\r\n- WikiData\r\n- Brenda (http://www.brenda-enzymes.org/)\r\n- KEGG (although Pubchem already uses KEGG)\r\n- HMDB\r\n- WikiPathways\r\n-  ChEBI (https://www.ebi.ac.uk/chebi/)"},"comment":{"url":"https://api.github.com/repos/jacobwindsor/pubchem-ranker/issues/comments/289379018","html_url":"https://github.com/jacobwindsor/pubchem-ranker/issues/6#issuecomment-289379018","issue_url":"https://api.github.com/repos/jacobwindsor/pubchem-ranker/issues/6","id":289379018,"user":{"login":"jacobwindsor","id":5579270,"avatar_url":"https://avatars1.githubusercontent.com/u/5579270?v=3","gravatar_id":"","url":"https://api.github.com/users/jacobwindsor","html_url":"https://github.com/jacobwindsor","followers_url":"https://api.github.com/users/jacobwindsor/followers","following_url":"https://api.github.com/users/jacobwindsor/following{/other_user}","gists_url":"https://api.github.com/users/jacobwindsor/gists{/gist_id}","starred_url":"https://api.github.com/users/jacobwindsor/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jacobwindsor/subscriptions","organizations_url":"https://api.github.com/users/jacobwindsor/orgs","repos_url":"https://api.github.com/users/jacobwindsor/repos","events_url":"https://api.github.com/users/jacobwindsor/events{/privacy}","received_events_url":"https://api.github.com/users/jacobwindsor/received_events","type":"User","site_admin":false},"created_at":"2017-03-27T07:50:16Z","updated_at":"2017-03-27T07:50:16Z","body":"Some more databases: \r\n\r\n- http://hmpdacc.org/resources/osdf-query.php\r\n- http://www.homd.org/\r\n- https://docs.figshare.com/api/\r\n- http://kbase.us/metabolic-modeling-in-kbase/\r\n- http://wikipathways.org\r\n \r\n\r\nAnd can use [this one](http://opsin.ch.cam.ac.uk/) to get SMILES from IUPAC"}}
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