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Generalized orthogonal force calculation using non-orthogonal forces, overlap matrix, and orthogonal transformation matrix.\r\n2. Simple unittest for this function is added.\r\n\r\n3. In the md.py, update vibronic hamiltonian block goes above the update force block. This is why it looked like I deleted same block and wrote it again. Anyway, this time I just commented out the previous update vibronic hamiltonian block.","created_at":"2017-03-15T22:51:47Z","updated_at":"2017-03-16T01:51:05Z","closed_at":null,"merged_at":null,"merge_commit_sha":"4712125cfed3df459a66063bbc55b98b077b73d6","assignee":null,"assignees":[],"milestone":null,"commits_url":"https://api.github.com/repos/alexvakimov/Libra-X/pulls/61/commits","review_comments_url":"https://api.github.com/repos/alexvakimov/Libra-X/pulls/61/comments","review_comment_url":"https://api.github.com/repos/alexvakimov/Libra-X/pulls/comments{/number}","comments_url":"https://api.github.com/repos/alexvakimov/Libra-X/issues/61/comments","statuses_url":"https://api.github.com/repos/alexvakimov/Libra-X/statuses/4c4744ab7cf98256055c712d972f90d6d4cf2628","head":{"label":"Pulokesh:devel","ref":"devel","sha":"4c4744ab7cf98256055c712d972f90d6d4cf2628","user":{"login":"Pulokesh","id":17130677,"avatar_url":"https://avatars2.githubusercontent.com/u/17130677?v=3","gravatar_id":"","url":"https://api.github.com/users/Pulokesh","html_url":"https://github.com/Pulokesh","followers_url":"https://api.github.com/users/Pulokesh/followers","following_url":"https://api.github.com/users/Pulokesh/following{/other_user}","gists_url":"https://api.github.com/users/Pulokesh/gists{/gist_id}","starred_url":"https://api.github.com/users/Pulokesh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Pulokesh/subscriptions","organizations_url":"https://api.github.com/users/Pulokesh/orgs","repos_url":"https://api.github.com/users/Pulokesh/repos","events_url":"https://api.github.com/users/Pulokesh/events{/privacy}","received_events_url":"https://api.github.com/users/Pulokesh/received_events","type":"User","site_admin":false},"repo":{"id":60628630,"name":"libra-gamess_interface","full_name":"Pulokesh/libra-gamess_interface","owner":{"login":"Pulokesh","id":17130677,"avatar_url":"https://avatars2.githubusercontent.com/u/17130677?v=3","gravatar_id":"","url":"https://api.github.com/users/Pulokesh","html_url":"https://github.com/Pulokesh","followers_url":"https://api.github.com/users/Pulokesh/followers","following_url":"https://api.github.com/users/Pulokesh/following{/other_user}","gists_url":"https://api.github.com/users/Pulokesh/gists{/gist_id}","starred_url":"https://api.github.com/users/Pulokesh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Pulokesh/subscriptions","organizations_url":"https://api.github.com/users/Pulokesh/orgs","repos_url":"https://api.github.com/users/Pulokesh/repos","events_url":"https://api.github.com/users/Pulokesh/events{/privacy}","received_events_url":"https://api.github.com/users/Pulokesh/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/Pulokesh/libra-gamess_interface","description":null,"fork":true,"url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface","forks_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/forks","keys_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/keys{/key_id}","collaborators_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/teams","hooks_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/hooks","issue_events_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/issues/events{/number}","events_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/events","assignees_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/assignees{/user}","branches_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/branches{/branch}","tags_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/tags","blobs_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/git/refs{/sha}","trees_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/git/trees{/sha}","statuses_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/statuses/{sha}","languages_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/languages","stargazers_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/stargazers","contributors_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/contributors","subscribers_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/subscribers","subscription_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/subscription","commits_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/commits{/sha}","git_commits_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/git/commits{/sha}","comments_url":"https://api.github.com/repos/Pulokesh/libra-gamess_interface/comments{/number}","issue_comment_url":"https://api.github.com/repos/P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