{"action":"created","issue":{"url":"https://api.github.com/repos/firemodels/fds/issues/4904","repository_url":"https://api.github.com/repos/firemodels/fds","labels_url":"https://api.github.com/repos/firemodels/fds/issues/4904/labels{/name}","comments_url":"https://api.github.com/repos/firemodels/fds/issues/4904/comments","events_url":"https://api.github.com/repos/firemodels/fds/issues/4904/events","html_url":"https://github.com/firemodels/fds/issues/4904","id":218665175,"number":4904,"title":"FDS 6.5.3 Upgrade Issue","user":{"login":"tgob","id":20181668,"avatar_url":"https://avatars2.githubusercontent.com/u/20181668?v=3","gravatar_id":"","url":"https://api.github.com/users/tgob","html_url":"https://github.com/tgob","followers_url":"https://api.github.com/users/tgob/followers","following_url":"https://api.github.com/users/tgob/following{/other_user}","gists_url":"https://api.github.com/users/tgob/gists{/gist_id}","starred_url":"https://api.github.com/users/tgob/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tgob/subscriptions","organizations_url":"https://api.github.com/users/tgob/orgs","repos_url":"https://api.github.com/users/tgob/repos","events_url":"https://api.github.com/users/tgob/events{/privacy}","received_events_url":"https://api.github.com/users/tgob/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"gforney","id":12403014,"avatar_url":"https://avatars1.githubusercontent.com/u/12403014?v=3","gravatar_id":"","url":"https://api.github.com/users/gforney","html_url":"https://github.com/gforney","followers_url":"https://api.github.com/users/gforney/followers","following_url":"https://api.github.com/users/gforney/following{/other_user}","gists_url":"https://api.github.com/users/gforney/gists{/gist_id}","starred_url":"https://api.github.com/users/gforney/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gforney/subscriptions","organizations_url":"https://api.github.com/users/gforney/orgs","repos_url":"https://api.github.com/users/gforney/repos","events_url":"https://api.github.com/users/gforney/events{/privacy}","received_events_url":"https://api.github.com/users/gforney/received_events","type":"User","site_admin":false},"assignees":[{"login":"gforney","id":12403014,"avatar_url":"https://avatars1.githubusercontent.com/u/12403014?v=3","gravatar_id":"","url":"https://api.github.com/users/gforney","html_url":"https://github.com/gforney","followers_url":"https://api.github.com/users/gforney/followers","following_url":"https://api.github.com/users/gforney/following{/other_user}","gists_url":"https://api.github.com/users/gforney/gists{/gist_id}","starred_url":"https://api.github.com/users/gforney/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gforney/subscriptions","organizations_url":"https://api.github.com/users/gforney/orgs","repos_url":"https://api.github.com/users/gforney/repos","events_url":"https://api.github.com/users/gforney/events{/privacy}","received_events_url":"https://api.github.com/users/gforney/received_events","type":"User","site_admin":false}],"milestone":null,"comments":109,"created_at":"2017-04-01T03:17:16Z","updated_at":"2017-04-27T10:01:35Z","closed_at":"2017-04-27T05:10:13Z","body":"I have FDS 6.5.2 with OpenMPI 1.8.4 running stably on a Linux Ubuntu  16.04 LTS cluster with Mellanox Infiniband.  The installation was completed using the NISTpre-compiled FDS binaries.  I recently attempted to upgrade to FDS 6.5.3 using the NIST precompiled binaries but there is a problem with the new installation:\r\n\r\nInstalling 64 bit Linux FDS 6.5.3 and Smokeview 6.4.4\r\n\r\nOptions:\r\n  1) Press <Enter> to begin installation\r\n  2) Type \"extract\" to copy the installation files to FDS_6.5.3-SMV_6.4.4_linux64.tar.gz\r\n\r\n\t[Enter]\r\n\r\nFDS install options\r\n  Press 1 to install in /home/ob1/FDS/FDS6 [default]\r\n  Press 2 to install in /opt/FDS/FDS6\r\n  Press 3 to install in /usr/local/bin/FDS/FDS6\r\n  Enter a directory path to install elsewhere\r\n\r\n\t[1][Enter]\r\n\r\nOpenMPI options\r\n  Press 1 to install OpenMPI manually [default]\r\n     See /home/ob1/FDS/FDS6/bin/README.html for details\r\n  Press 2 to use /shared/openmpi_64ib\r\n\r\n\t[2][Enter]\r\n\r\nInstallation directory: /home/ob1/FDS/FDS6\r\n     OpenMPI directory: /shared/openmpi_64ib\r\n\r\nInstallation beginning\r\nThe directory, /home/ob1/FDS/FDS6, already exists.\r\nThe installation directory, /home/ob1/FDS/FDS6, has been created.\r\nCreating directory /home/ob1/FDS/FDS6/Uninstall\r\nThe installation directory, /home/ob1/FDS/FDS6/Uninstall, has been created.\r\n\r\nCopying FDS installation files to /home/ob1/FDS/FDS6\r\nCopy complete.\r\n\r\nBacking up /home/ob1/.bashrc_fds to /home/ob1/.bashrc_fds_20170401_102309\r\nUpdating .bashrc_fds\r\n\r\nBacking up /home/ob1/.bashrc to /home/ob1/.bashrc_20170401_102309\r\nUpdating .bashrc\r\n\r\n*** Log out and log back in so changes will take effect.\r\n\r\nInstallation complete.\r\n\r\nNo issues were reported during the install but when I execute fds from a terminal command prompt on the Master node I get the following output:\r\n\r\n--------------------------------------------------------------------------\r\nSorry!  You were supposed to get help about:\r\n    ini file:file not found\r\nBut I couldn't open the help file:\r\n    /shared/openmpi_64/share/openmpi/help-mpi-btl-openib.txt: No such file or directory.  Sorry!\r\n--------------------------------------------------------------------------\r\nlibibverbs: Warning: couldn't load driver '/usr/lib/libibverbs/libmlx5': /usr/lib/libibverbs/libmlx5-rdmav2.so: symbol ibv_cmd_destroy_flow, version IBVERBS_1.0 not defined in file libibverbs.so.1 with link time reference\r\n\r\nlibibverbs: Warning: couldn't load driver '/usr/lib/libibverbs/libmlx4': /usr/lib/libibverbs/libmlx4-rdmav2.so: symbol ibv_cmd_destroy_flow, version IBVERBS_1.0 not defined in file libibverbs.so.1 with link time reference\r\n\r\nlibibverbs: Warning: no userspace device-specific driver found for /sys/class/infiniband_verbs/uverbs0\r\n--------------------------------------------------------------------------\r\nSorry!  You were supposed to get help about:\r\n\r\n    btl:no-nics\r\n\r\nBut I couldn't open the help file:\r\n\r\n    /shared/openmpi_64/share/openmpi/help-mpi-btl-base.txt: No such file or directory.  Sorry!\r\n--------------------------------------------------------------------------\r\n\r\n Fire Dynamics Simulator\r\n\r\n\r\n Current Date     : April  1, 2017  10:32:42\r\n\r\n Version          : FDS 6.5.3\r\n\r\n Revision         : FDS6.5.3-598-geb56ed1\r\n\r\n Revision Date    : Thu Jan 19 16:12:59 2017 -0500\r\n\r\n Compilation Date : Jan 22, 2017  18:04:30\r\n\r\n MPI Enabled; Number of MPI Processes:          1\r\n\r\n OpenMP Enabled; Number of OpenMP Threads:   4\r\n\r\n\r\n MPI version: 3.0\r\n\r\n MPI library version: Open MPI v1.8.4, package: Open MPI gforney@burn Distribution, ident: 1.8.4, repo rev: v1.8.3-330-g0344f04, Dec 19, 2014\r\n\r\n Consult FDS Users Guide Chapter, Running FDS, for further instructions.\r\n\r\n Hit Enter to Escape...\r\n\r\n\r\nFor some reason FDS appears to be trying to access a non-infinband openmpi installation and associated help files at:\r\n\r\n    /shared/openmpi_64/share/openmpi\r\n\r\nHowever openmpi resides in the default Infiniband installation directory (as for FDS 6.5.2):\r\n\r\n    /shared/openmpi_64ib/share/openmpi\r\n\r\n.bashrc and .bashrc_fds are setting the environment variables appropriately, and in particular PATH, LD_LIBRARY_PATH and FDSNETWORK as follows:\r\n\r\nPATH:  \r\n\r\n/shared/openmpi_64ib/bin:/home/ob1/FDS/FDS6/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin\r\n\r\nLD_LIBRARY_PATH\r\n\r\n/shared/openmpi_64ib/lib:/home/ob1/FDS/FDS6/bin/LIB64:/home/ob1/FDS/FDS6/bin/INTELLIBS16\r\n\r\nFDSNETWORK\r\n\r\nInfiniband\r\n\t\r\n\r\nPast upgrades (for example from 6.5.0 to 6.5.2) have been completed successfully by simply downloading the FDS and SmokeView precompiled Linux bundle and running the script (.sh) file.\r\n\r\nInfiniband is still working, openmpi is still working (via Infiniband) and SSH is still working (password-less access) between all nodes.\r\n\r\nA Windows 7 upgrade to 6.5.3 worked just fine (albeit without openmpi and Infinband on my Windows workstation).\r\n\r\nI also tried a Linux Ubuntu 16.04 LTS install without openmpi or Infiniband.  This also worked fine.\r\n\r\n\r\nAny suggestions on how I might complete the upgrade to FDS 6.5.3?\r\n"},"comment":{"url":"https://api.github.com/repos/firemodels/fds/issues/comments/297670481","html_url":"https://github.com/firemodels/fds/issues/4904#issuecomment-297670481","issue_url":"https://api.github.com/repos/firemodels/fds/issues/4904","id":297670481,"user":{"login":"rmcdermo","id":4418497,"avatar_url":"https://avatars1.githubusercontent.com/u/4418497?v=3","gravatar_id":"","url":"https://api.github.com/users/rmcdermo","html_url":"https://github.com/rmcdermo","followers_url":"https://api.github.com/users/rmcdermo/followers","following_url":"https://api.github.com/users/rmcdermo/following{/other_user}","gists_url":"https://api.github.com/users/rmcdermo/gists{/gist_id}","starred_url":"https://api.github.com/users/rmcdermo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rmcdermo/subscriptions","organizations_url":"https://api.github.com/users/rmcdermo/orgs","repos_url":"https://api.github.com/users/rmcdermo/repos","events_url":"https://api.github.com/users/rmcdermo/events{/privacy}","received_events_url":"https://api.github.com/users/rmcdermo/received_events","type":"User","site_admin":false},"created_at":"2017-04-27T10:01:35Z","updated_at":"2017-04-27T10:01:35Z","body":"FYI.  We got away from using -O3 because we showed it gave in some cases significantly different numerical results from -O2.  Ultimately, we lost trust in it.  But my memory is fuzzy on this.  We are going back a few years to when Kris Overholt was here."}}
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