{"action":"created","issue":{"url":"https://api.github.com/repos/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/issues/4","repository_url":"https://api.github.com/repos/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics","labels_url":"https://api.github.com/repos/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/issues/4/comments","events_url":"https://api.github.com/repos/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/issues/4/events","html_url":"https://github.com/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/pull/4","id":210824242,"number":4,"title":"Try installing latest NCBI BLAST+ 2.6.0 via conda","user":{"login":"peterjc","id":63959,"avatar_url":"https://avatars1.githubusercontent.com/u/63959?v=3","gravatar_id":"","url":"https://api.github.com/users/peterjc","html_url":"https://github.com/peterjc","followers_url":"https://api.github.com/users/peterjc/followers","following_url":"https://api.github.com/users/peterjc/following{/other_user}","gists_url":"https://api.github.com/users/peterjc/gists{/gist_id}","starred_url":"https://api.github.com/users/peterjc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/peterjc/subscriptions","organizations_url":"https://api.github.com/users/peterjc/orgs","repos_url":"https://api.github.com/users/peterjc/repos","events_url":"https://api.github.com/users/peterjc/events{/privacy}","received_events_url":"https://api.github.com/users/peterjc/received_events","type":"User","site_admin":false},"labels":[{"id":532644990,"url":"https://api.github.com/repos/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/labels/question","name":"question","color":"cc317c","default":true}],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2017-02-28T15:44:33Z","updated_at":"2017-03-01T11:12:54Z","closed_at":"2017-03-01T11:08:18Z","pull_request":{"url":"https://api.github.com/repos/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/pulls/4","html_url":"https://github.com/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/pull/4","diff_url":"https://github.com/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/pull/4.diff","patch_url":"https://github.com/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/pull/4.patch"},"body":"I wrote this a while back but didn't submit the PR till today.\r\n\r\nIt seems Docker base image ``andrewosh/binder-base`` lacks documentation, but from searching on GitHub multiple projects are using it and it appears to come with conda installed.\r\n\r\nhttps://hub.docker.com/r/andrewosh/binder-base/\r\n\r\nSo we can use that to install the latest BLAST+ with conda, rather than whatever comes with the Docker image via ``apt-get``\r\n\r\nNOTE: This pull request does not touch ``install-apps.sh``, see alternative pull request removing the BLAST+ install from ``Dockerfile`` and making it execute ``install-apps.sh`` instead."},"comment":{"url":"https://api.github.com/repos/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/issues/comments/283313160","html_url":"https://github.com/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/pull/4#issuecomment-283313160","issue_url":"https://api.github.com/repos/widdowquinn/Teaching-IBioIC-Intro-to-Bioinformatics/issues/4","id":283313160,"user":{"login":"peterjc","id":63959,"avatar_url":"https://avatars1.githubusercontent.com/u/63959?v=3","gravatar_id":"","url":"https://api.github.com/users/peterjc","html_url":"https://github.com/peterjc","followers_url":"https://api.github.com/users/peterjc/followers","following_url":"https://api.github.com/users/peterjc/following{/other_user}","gists_url":"https://api.github.com/users/peterjc/gists{/gist_id}","starred_url":"https://api.github.com/users/peterjc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/peterjc/subscriptions","organizations_url":"https://api.github.com/users/peterjc/orgs","repos_url":"https://api.github.com/users/peterjc/repos","events_url":"https://api.github.com/users/peterjc/events{/privacy}","received_events_url":"https://api.github.com/users/peterjc/received_events","type":"User","site_admin":false},"created_at":"2017-03-01T11:12:54Z","updated_at":"2017-03-01T11:12:54Z","body":"If we need a more current version of NCBI BLAST+ (or any other tool) than can be installed via ``apt-get``, then there is a case for using BioConda here."}}
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