{"action":"created","issue":{"url":"https://api.github.com/repos/neherlab/pan-genome-analysis/issues/3","repository_url":"https://api.github.com/repos/neherlab/pan-genome-analysis","labels_url":"https://api.github.com/repos/neherlab/pan-genome-analysis/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/neherlab/pan-genome-analysis/issues/3/comments","events_url":"https://api.github.com/repos/neherlab/pan-genome-analysis/issues/3/events","html_url":"https://github.com/neherlab/pan-genome-analysis/pull/3","id":280413430,"number":3,"title":"Use diamond installed with conda","user":{"login":"bebatut","id":1842467,"avatar_url":"https://avatars0.githubusercontent.com/u/1842467?v=4","gravatar_id":"","url":"https://api.github.com/users/bebatut","html_url":"https://github.com/bebatut","followers_url":"https://api.github.com/users/bebatut/followers","following_url":"https://api.github.com/users/bebatut/following{/other_user}","gists_url":"https://api.github.com/users/bebatut/gists{/gist_id}","starred_url":"https://api.github.com/users/bebatut/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bebatut/subscriptions","organizations_url":"https://api.github.com/users/bebatut/orgs","repos_url":"https://api.github.com/users/bebatut/repos","events_url":"https://api.github.com/users/bebatut/events{/privacy}","received_events_url":"https://api.github.com/users/bebatut/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2017-12-08T08:38:22Z","updated_at":"2017-12-08T11:29:37Z","closed_at":"2017-12-08T11:29:09Z","author_association":"CONTRIBUTOR","pull_request":{"url":"https://api.github.com/repos/neherlab/pan-genome-analysis/pulls/3","html_url":"https://github.com/neherlab/pan-genome-analysis/pull/3","diff_url":"https://github.com/neherlab/pan-genome-analysis/pull/3.diff","patch_url":"https://github.com/neherlab/pan-genome-analysis/pull/3.patch"},"body":"Hi,\r\n\r\nI had issues with the execution on MacOS. I found that the diamond used was the one in this repo and not the one installed with conda.\r\n\r\nTo fix that, this PR:\r\n- Removes the diamond executable\r\n- Fixes the extraction of path for diamond exec\r\n\r\nI ran the tests to check.\r\nI hope these changes will fit you\r\n\r\nBérénice"},"comment":{"url":"https://api.github.com/repos/neherlab/pan-genome-analysis/issues/comments/350241846","html_url":"https://github.com/neherlab/pan-genome-analysis/pull/3#issuecomment-350241846","issue_url":"https://api.github.com/repos/neherlab/pan-genome-analysis/issues/3","id":350241846,"user":{"login":"wdingx","id":19961652,"avatar_url":"https://avatars1.githubusercontent.com/u/19961652?v=4","gravatar_id":"","url":"https://api.github.com/users/wdingx","html_url":"https://github.com/wdingx","followers_url":"https://api.github.com/users/wdingx/followers","following_url":"https://api.github.com/users/wdingx/following{/other_user}","gists_url":"https://api.github.com/users/wdingx/gists{/gist_id}","starred_url":"https://api.github.com/users/wdingx/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wdingx/subscriptions","organizations_url":"https://api.github.com/users/wdingx/orgs","repos_url":"https://api.github.com/users/wdingx/repos","events_url":"https://api.github.com/users/wdingx/events{/privacy}","received_events_url":"https://api.github.com/users/wdingx/received_events","type":"User","site_admin":false},"created_at":"2017-12-08T11:29:37Z","updated_at":"2017-12-08T11:29:37Z","author_association":"CONTRIBUTOR","body":"Thanks, Bérénice."}}
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