{"action":"created","issue":{"url":"https://api.github.com/repos/cortex-lab/Suite2P/issues/9","repository_url":"https://api.github.com/repos/cortex-lab/Suite2P","labels_url":"https://api.github.com/repos/cortex-lab/Suite2P/issues/9/labels{/name}","comments_url":"https://api.github.com/repos/cortex-lab/Suite2P/issues/9/comments","events_url":"https://api.github.com/repos/cortex-lab/Suite2P/issues/9/events","html_url":"https://github.com/cortex-lab/Suite2P/issues/9","id":128134899,"number":9,"title":"Making fixed variables as input parameters","user":{"login":"MarioDipoppa","id":16193993,"avatar_url":"https://avatars1.githubusercontent.com/u/16193993?v=4","gravatar_id":"","url":"https://api.github.com/users/MarioDipoppa","html_url":"https://github.com/MarioDipoppa","followers_url":"https://api.github.com/users/MarioDipoppa/followers","following_url":"https://api.github.com/users/MarioDipoppa/following{/other_user}","gists_url":"https://api.github.com/users/MarioDipoppa/gists{/gist_id}","starred_url":"https://api.github.com/users/MarioDipoppa/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MarioDipoppa/subscriptions","organizations_url":"https://api.github.com/users/MarioDipoppa/orgs","repos_url":"https://api.github.com/users/MarioDipoppa/repos","events_url":"https://api.github.com/users/MarioDipoppa/events{/privacy}","received_events_url":"https://api.github.com/users/MarioDipoppa/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":7,"created_at":"2016-01-22T11:17:56Z","updated_at":"2017-10-24T20:27:48Z","closed_at":null,"author_association":"COLLABORATOR","body":"in get_signals_and_neuropil, neuropil radius, microscope zoom, inner radius of the neuropil mask are fixed variables. We should make them input parameters in make_db. Number of pixels of each frames can instead be read from the tiff file.\n"},"comment":{"url":"https://api.github.com/repos/cortex-lab/Suite2P/issues/comments/339120646","html_url":"https://github.com/cortex-lab/Suite2P/issues/9#issuecomment-339120646","issue_url":"https://api.github.com/repos/cortex-lab/Suite2P/issues/9","id":339120646,"user":{"login":"xigumalu","id":12951038,"avatar_url":"https://avatars2.githubusercontent.com/u/12951038?v=4","gravatar_id":"","url":"https://api.github.com/users/xigumalu","html_url":"https://github.com/xigumalu","followers_url":"https://api.github.com/users/xigumalu/followers","following_url":"https://api.github.com/users/xigumalu/following{/other_user}","gists_url":"https://api.github.com/users/xigumalu/gists{/gist_id}","starred_url":"https://api.github.com/users/xigumalu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/xigumalu/subscriptions","organizations_url":"https://api.github.com/users/xigumalu/orgs","repos_url":"https://api.github.com/users/xigumalu/repos","events_url":"https://api.github.com/users/xigumalu/events{/privacy}","received_events_url":"https://api.github.com/users/xigumalu/received_events","type":"User","site_admin":false},"created_at":"2017-10-24T20:27:48Z","updated_at":"2017-10-24T20:27:48Z","author_association":"COLLABORATOR","body":"This means that one would need to set the zoom for each recording manually instead of reading it from the tiff header. Also not so convenient. In addition, the translation from pixels to magnification is not linear across zoom factors.\r\nHowever, I don't think that the diameter setting is very crucial for ROI detection, is it?\r\nFor neuropil correction I use my own code now."}}
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