{"action":"created","issue":{"url":"https://api.github.com/repos/mikessh/vdjtools/issues/70","repository_url":"https://api.github.com/repos/mikessh/vdjtools","labels_url":"https://api.github.com/repos/mikessh/vdjtools/issues/70/labels{/name}","comments_url":"https://api.github.com/repos/mikessh/vdjtools/issues/70/comments","events_url":"https://api.github.com/repos/mikessh/vdjtools/issues/70/events","html_url":"https://github.com/mikessh/vdjtools/issues/70","id":222249108,"number":70,"title":"Problem with Mixcr parsing recently","user":{"login":"mimisikai","id":4881411,"avatar_url":"https://avatars2.githubusercontent.com/u/4881411?v=3","gravatar_id":"","url":"https://api.github.com/users/mimisikai","html_url":"https://github.com/mimisikai","followers_url":"https://api.github.com/users/mimisikai/followers","following_url":"https://api.github.com/users/mimisikai/following{/other_user}","gists_url":"https://api.github.com/users/mimisikai/gists{/gist_id}","starred_url":"https://api.github.com/users/mimisikai/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mimisikai/subscriptions","organizations_url":"https://api.github.com/users/mimisikai/orgs","repos_url":"https://api.github.com/users/mimisikai/repos","events_url":"https://api.github.com/users/mimisikai/events{/privacy}","received_events_url":"https://api.github.com/users/mimisikai/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2017-04-17T22:27:24Z","updated_at":"2017-04-28T06:40:47Z","closed_at":"2017-04-27T09:24:16Z","body":"I face the issue when I input the Mixcr data as:\r\njava.lang.RuntimeException: Unable to parse clonotype string 0\t5191\t0.003440188372017504\tTGTGCAAGATGGGGTTCTACGGCCTACTACTTTGACTACTGG\tGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG\tIGHV1-72*00(1076.1),IGHV1-62-3*00(1040.5),IGHV1-62*00(976.6)\tIGHD2-3*00(33),IGHD1-1*00(30)\tIGHJ2*00(244.1)\tIGHA*00(402.8)\t285|295|314|0|10||50.0;285|295|314|0|10||50.0;284|294|313|0|10||50.0\t25|35|51|12|21|DA29|33.0;30|36|69|16|22||30.0\t19|37|68|24|42||90.0\t\t\t\t\t\t\t\t\t\t\t\tTGTGCAAGATGGGGTTCTACGGCCTACTACTTTGACTACTGG\t38\t\t\t\t\t\t\t\tCARWGSTAYYFDYW\t\t:::::::::0:1:10:12:-8:1:21:24:1:42::: for VDJtools input type: Unknown nucleotide: \"0\".\r\n\r\nThe Mixcr results are from version 2.1.1 and 2.1.2-rc0. I doubt whether the compatibility issue btw Mixcr and VDJtools. "},"comment":{"url":"https://api.github.com/repos/mikessh/vdjtools/issues/comments/297920354","html_url":"https://github.com/mikessh/vdjtools/issues/70#issuecomment-297920354","issue_url":"https://api.github.com/repos/mikessh/vdjtools/issues/70","id":297920354,"user":{"login":"mikessh","id":6215797,"avatar_url":"https://avatars3.githubusercontent.com/u/6215797?v=3","gravatar_id":"","url":"https://api.github.com/users/mikessh","html_url":"https://github.com/mikessh","followers_url":"https://api.github.com/users/mikessh/followers","following_url":"https://api.github.com/users/mikessh/following{/other_user}","gists_url":"https://api.github.com/users/mikessh/gists{/gist_id}","starred_url":"https://api.github.com/users/mikessh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mikessh/subscriptions","organizations_url":"https://api.github.com/users/mikessh/orgs","repos_url":"https://api.github.com/users/mikessh/repos","events_url":"https://api.github.com/users/mikessh/events{/privacy}","received_events_url":"https://api.github.com/users/mikessh/received_events","type":"User","site_admin":false},"created_at":"2017-04-28T06:40:47Z","updated_at":"2017-04-28T06:40:47Z","body":"I mean the original issue you have created (parsing MIXCR)"}}
{"actor":{"display_login":"mikessh"}}