{"action":"created","issue":{"url":"https://api.github.com/repos/CGATOxford/cgat/issues/353","repository_url":"https://api.github.com/repos/CGATOxford/cgat","labels_url":"https://api.github.com/repos/CGATOxford/cgat/issues/353/labels{/name}","comments_url":"https://api.github.com/repos/CGATOxford/cgat/issues/353/comments","events_url":"https://api.github.com/repos/CGATOxford/cgat/issues/353/events","html_url":"https://github.com/CGATOxford/cgat/issues/353","id":254698225,"number":353,"title":"bits_test call in bed_vs_bed.py","user":{"login":"sebastian-luna-valero","id":5345517,"avatar_url":"https://avatars0.githubusercontent.com/u/5345517?v=4","gravatar_id":"","url":"https://api.github.com/users/sebastian-luna-valero","html_url":"https://github.com/sebastian-luna-valero","followers_url":"https://api.github.com/users/sebastian-luna-valero/followers","following_url":"https://api.github.com/users/sebastian-luna-valero/following{/other_user}","gists_url":"https://api.github.com/users/sebastian-luna-valero/gists{/gist_id}","starred_url":"https://api.github.com/users/sebastian-luna-valero/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sebastian-luna-valero/subscriptions","organizations_url":"https://api.github.com/users/sebastian-luna-valero/orgs","repos_url":"https://api.github.com/users/sebastian-luna-valero/repos","events_url":"https://api.github.com/users/sebastian-luna-valero/events{/privacy}","received_events_url":"https://api.github.com/users/sebastian-luna-valero/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2017-09-01T16:58:54Z","updated_at":"2017-11-15T09:55:35Z","closed_at":null,"author_association":"OWNER","body":"\r\nHi everyone,\r\n\r\nThe `bed_vs_bed.py` script says:\r\n\r\n> This script is a wrapper around bits_test. It splits one bedfile by name and computes the overlap of intervals in the first :term:`bed` file against the other.\r\n\r\nand contains a [call](https://github.com/CGATOxford/cgat/blob/master/CGAT/scripts/bed_vs_bed.py#L88) to an external program called `bits_test`.\r\n\r\nCould somebody please point me to this external program?\r\n\r\nGoogle takes me to [bits](https://github.com/arq5x/bits), but the CUDA requirement makes me doubt.\r\n\r\nBest regards,\r\nSebastian\r\n"},"comment":{"url":"https://api.github.com/repos/CGATOxford/cgat/issues/comments/344542427","html_url":"https://github.com/CGATOxford/cgat/issues/353#issuecomment-344542427","issue_url":"https://api.github.com/repos/CGATOxford/cgat/issues/353","id":344542427,"user":{"login":"Acribbs","id":12068583,"avatar_url":"https://avatars3.githubusercontent.com/u/12068583?v=4","gravatar_id":"","url":"https://api.github.com/users/Acribbs","html_url":"https://github.com/Acribbs","followers_url":"https://api.github.com/users/Acribbs/followers","following_url":"https://api.github.com/users/Acribbs/following{/other_user}","gists_url":"https://api.github.com/users/Acribbs/gists{/gist_id}","starred_url":"https://api.github.com/users/Acribbs/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Acribbs/subscriptions","organizations_url":"https://api.github.com/users/Acribbs/orgs","repos_url":"https://api.github.com/users/Acribbs/repos","events_url":"https://api.github.com/users/Acribbs/events{/privacy}","received_events_url":"https://api.github.com/users/Acribbs/received_events","type":"User","site_admin":false},"created_at":"2017-11-15T09:55:35Z","updated_at":"2017-11-15T09:55:35Z","author_association":"MEMBER","body":"@sebastian-luna-valero can this be closed?"}}
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