{"action":"created","issue":{"url":"https://api.github.com/repos/BlueBrain/eFEL/issues/120","repository_url":"https://api.github.com/repos/BlueBrain/eFEL","labels_url":"https://api.github.com/repos/BlueBrain/eFEL/issues/120/labels{/name}","comments_url":"https://api.github.com/repos/BlueBrain/eFEL/issues/120/comments","events_url":"https://api.github.com/repos/BlueBrain/eFEL/issues/120/events","html_url":"https://github.com/BlueBrain/eFEL/issues/120","id":273351349,"number":120,"title":"What do certain settings do - where to look it up?","user":{"login":"SvennoNito","id":32299254,"avatar_url":"https://avatars2.githubusercontent.com/u/32299254?v=4","gravatar_id":"","url":"https://api.github.com/users/SvennoNito","html_url":"https://github.com/SvennoNito","followers_url":"https://api.github.com/users/SvennoNito/followers","following_url":"https://api.github.com/users/SvennoNito/following{/other_user}","gists_url":"https://api.github.com/users/SvennoNito/gists{/gist_id}","starred_url":"https://api.github.com/users/SvennoNito/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/SvennoNito/subscriptions","organizations_url":"https://api.github.com/users/SvennoNito/orgs","repos_url":"https://api.github.com/users/SvennoNito/repos","events_url":"https://api.github.com/users/SvennoNito/events{/privacy}","received_events_url":"https://api.github.com/users/SvennoNito/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2017-11-13T08:50:50Z","updated_at":"2017-11-16T09:19:29Z","closed_at":null,"author_association":"NONE","body":"Hey,\r\n\r\nthanks for this amazing toolbox! If it works it will save me so much work. I have intracellular recordings of leech neurons. We injected different electrical current during recording, which elicited action potentials. I try to detect certain spike train characteristics, yet for some stimulus values the toolbox doesn't detect action potentials correctly, yet. I already found out that I can change certain setting using \r\n\r\n`   setDoubleSetting('spike_skipf', 0.1)\r\n    setIntSetting('max_spike_skip', 2)\r\n    setDoubleSetting('Threshold', _settings.threshold)\r\n    setDoubleSetting('DerivativeThreshold', _settings.derivative_threshold)\r\n    setDoubleSetting('interp_step', 0.1)\r\n    setDoubleSetting('burst_factor', 1.5)\r\n    setDoubleSetting('voltage_base_start_perc', 0.9)\r\n    setDoubleSetting('voltage_base_end_perc', 1.0)\r\n    setDoubleSetting(\"initial_perc\", 0.1)\r\n    setDoubleSetting(\"min_spike_height\", 20.0)\r\n    setIntSetting(\"strict_stiminterval\", 0)`\r\n\r\nHowever, instead of randomly changing those values until my peaks are detected correctly, I would like to look up what these settings actually mean. I only found documentation for _Threshold_ and _DerivativeThreshold_. Is there documentation for all setting somewhere? I will upload two plots showing trials in which spikes are detected wrongly or not at all.\r\n\r\n![stim_1 0](https://user-images.githubusercontent.com/32299254/32717091-b417654c-c858-11e7-9ce0-c389db8c1748.png)\r\n![stim_1 75](https://user-images.githubusercontent.com/32299254/32717100-b93d7908-c858-11e7-84a9-5b20c97202b7.png)\r\n"},"comment":{"url":"https://api.github.com/repos/BlueBrain/eFEL/issues/comments/344862771","html_url":"https://github.com/BlueBrain/eFEL/issues/120#issuecomment-344862771","issue_url":"https://api.github.com/repos/BlueBrain/eFEL/issues/120","id":344862771,"user":{"login":"SvennoNito","id":32299254,"avatar_url":"https://avatars2.githubusercontent.com/u/32299254?v=4","gravatar_id":"","url":"https://api.github.com/users/SvennoNito","html_url":"https://github.com/SvennoNito","followers_url":"https://api.github.com/users/SvennoNito/followers","following_url":"https://api.github.com/users/SvennoNito/following{/other_user}","gists_url":"https://api.github.com/users/SvennoNito/gists{/gist_id}","starred_url":"https://api.github.com/users/SvennoNito/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/SvennoNito/subscriptions","organizations_url":"https://api.github.com/users/SvennoNito/orgs","repos_url":"https://api.github.com/users/SvennoNito/repos","events_url":"https://api.github.com/users/SvennoNito/events{/privacy}","received_events_url":"https://api.github.com/users/SvennoNito/received_events","type":"User","site_admin":false},"created_at":"2017-11-16T09:19:29Z","updated_at":"2017-11-16T09:19:29Z","author_association":"NONE","body":"Hey, thanks for the explanation, that helps a lot! I will try that later, maybe that will change my problem already. Nevertheless: do you know whether the other paramters (e.g. spike_skipf) are explained somewhere, too?"}}
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