{"action":"closed","issue":{"url":"https://api.github.com/repos/CGATOxford/UMI-tools/issues/208","repository_url":"https://api.github.com/repos/CGATOxford/UMI-tools","labels_url":"https://api.github.com/repos/CGATOxford/UMI-tools/issues/208/labels{/name}","comments_url":"https://api.github.com/repos/CGATOxford/UMI-tools/issues/208/comments","events_url":"https://api.github.com/repos/CGATOxford/UMI-tools/issues/208/events","html_url":"https://github.com/CGATOxford/UMI-tools/issues/208","id":274144675,"number":208,"title":"running UMI tools from the command line","user":{"login":"annamarialara","id":26789889,"avatar_url":"https://avatars1.githubusercontent.com/u/26789889?v=4","gravatar_id":"","url":"https://api.github.com/users/annamarialara","html_url":"https://github.com/annamarialara","followers_url":"https://api.github.com/users/annamarialara/followers","following_url":"https://api.github.com/users/annamarialara/following{/other_user}","gists_url":"https://api.github.com/users/annamarialara/gists{/gist_id}","starred_url":"https://api.github.com/users/annamarialara/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/annamarialara/subscriptions","organizations_url":"https://api.github.com/users/annamarialara/orgs","repos_url":"https://api.github.com/users/annamarialara/repos","events_url":"https://api.github.com/users/annamarialara/events{/privacy}","received_events_url":"https://api.github.com/users/annamarialara/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2017-11-15T12:48:28Z","updated_at":"2017-11-15T13:29:31Z","closed_at":"2017-11-15T13:29:31Z","author_association":"NONE","body":"Hi I am trying to install UMI_tools. Pip didn't work so I followed these instructions:\r\n\r\n$ wget https://github.com/CGATOxford/UMI-tools/archive/master.zip\r\n$ unzip master.zip\r\n$ cd UMI-tools-master\r\n$ python setup.py install --user\r\n\r\nWhich ran fine but then I don't seem to able to find any executable as in I am unsure how to now run umi-tools from the command line without using python.\r\n\r\ntried simple thinks like umi_tools --help ect. but this won't run (returns command not found)\r\nI also downloaded the UMI-tools-0.5.1 package in the same way but this is the same problem-not sure if there is any difference...\r\n\r\nI tried as suggested in the installation guide:\r\n$ nosetests tests/test_umi_tools.py \r\n\r\nwhich ran but returned 33 failures.\r\n\r\nCould you perhaps advise on how to run umi_tools from the command line after the installation ? Thanks a lot!"}}
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