{"action":"opened","issue":{"url":"https://api.github.com/repos/etal/cnvkit/issues/187","repository_url":"https://api.github.com/repos/etal/cnvkit","labels_url":"https://api.github.com/repos/etal/cnvkit/issues/187/labels{/name}","comments_url":"https://api.github.com/repos/etal/cnvkit/issues/187/comments","events_url":"https://api.github.com/repos/etal/cnvkit/issues/187/events","html_url":"https://github.com/etal/cnvkit/issues/187","id":205653824,"number":187,"title":"Sample IDs do not match","user":{"login":"holtgrewe","id":521780,"avatar_url":"https://avatars.githubusercontent.com/u/521780?v=3","gravatar_id":"","url":"https://api.github.com/users/holtgrewe","html_url":"https://github.com/holtgrewe","followers_url":"https://api.github.com/users/holtgrewe/followers","following_url":"https://api.github.com/users/holtgrewe/following{/other_user}","gists_url":"https://api.github.com/users/holtgrewe/gists{/gist_id}","starred_url":"https://api.github.com/users/holtgrewe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/holtgrewe/subscriptions","organizations_url":"https://api.github.com/users/holtgrewe/orgs","repos_url":"https://api.github.com/users/holtgrewe/repos","events_url":"https://api.github.com/users/holtgrewe/events{/privacy}","received_events_url":"https://api.github.com/users/holtgrewe/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2017-02-06T17:26:04Z","updated_at":"2017-02-06T17:26:04Z","closed_at":null,"body":"I'm using the most current cnvkit from PyPi.\r\n\r\nI'm getting an error `\"ValueError: Sample IDs do not match:'cnvkit.coverage.target.bwa.SAMPLE (target) vs. 'cnvkit.coverage.antitarget.bwa.SAMPLE' (antitarget)` with the following call.\r\n\r\nWhat am I doing wrong?\r\n\r\n```\r\ncnvkit.py fix \\\r\nwork/cnvkit.coverage.target.bwa.SAMPLE/out/cnvkit.coverage.target.bwa.SAMPLE.cnn \\\r\nwork/cnvkit.coverage.antitarget.bwa.SAMPLE/out/cnvkit.coverage.antitarget.bwa.SAMPLE.cnn \\\r\nwork/cnvkit.reference.bwa/out/cnvkit.reference.bwa.cnn \\\r\n-o work/cnvkit.fix.bwa.SAMPLE/out/cnvkit.fix.bwa.SAMPLE.cnr\r\n```"}}
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