{"action":"closed","issue":{"url":"https://api.github.com/repos/jts/nanopolish/issues/206","repository_url":"https://api.github.com/repos/jts/nanopolish","labels_url":"https://api.github.com/repos/jts/nanopolish/issues/206/labels{/name}","comments_url":"https://api.github.com/repos/jts/nanopolish/issues/206/comments","events_url":"https://api.github.com/repos/jts/nanopolish/issues/206/events","html_url":"https://github.com/jts/nanopolish/issues/206","id":249834900,"number":206,"title":"Error when running nanopolish_test","user":{"login":"apredeus","id":7825825,"avatar_url":"https://avatars2.githubusercontent.com/u/7825825?v=4","gravatar_id":"","url":"https://api.github.com/users/apredeus","html_url":"https://github.com/apredeus","followers_url":"https://api.github.com/users/apredeus/followers","following_url":"https://api.github.com/users/apredeus/following{/other_user}","gists_url":"https://api.github.com/users/apredeus/gists{/gist_id}","starred_url":"https://api.github.com/users/apredeus/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/apredeus/subscriptions","organizations_url":"https://api.github.com/users/apredeus/orgs","repos_url":"https://api.github.com/users/apredeus/repos","events_url":"https://api.github.com/users/apredeus/events{/privacy}","received_events_url":"https://api.github.com/users/apredeus/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2017-08-12T20:56:46Z","updated_at":"2017-08-17T20:42:58Z","closed_at":"2017-08-17T20:42:58Z","body":"Hello all, \r\n\r\nI get this error when I run nanopolish_test in freshly cloned and compiled version of nanopolish (as of Aug 12th). Nanopolish exec is made and seems to work normally. Any ideas why is this one assertion fails? \r\n\r\n```\r\napredeus@unit-769 ~/nanopolish $ ./nanopolish_test \r\nHDF5-DIAG: Error detected in HDF5 (1.8.14) thread 140661052315584:\r\n  #000: H5Dio.c line 173 in H5Dread(): can't read data\r\n    major: Dataset\r\n    minor: Read failed\r\n  #001: H5Dio.c line 550 in H5D__read(): can't read data\r\n    major: Dataset\r\n    minor: Read failed\r\n  #002: H5Dchunk.c line 1872 in H5D__chunk_read(): unable to read raw data chunk\r\n    major: Low-level I/O\r\n    minor: Read failed\r\n  #003: H5Dchunk.c line 2902 in H5D__chunk_lock(): data pipeline read failed\r\n    major: Data filters\r\n    minor: Filter operation failed\r\n  #004: H5Z.c line 1357 in H5Z_pipeline(): required filter 'deflate' is not registered\r\n    major: Data filters\r\n    minor: Read failed\r\n  #005: H5PL.c line 298 in H5PL_load(): search in paths failed\r\n    major: Plugin for dynamically loaded library\r\n    minor: Can't get value\r\n  #006: H5PL.c line 402 in H5PL__find(): can't open directory\r\n    major: Plugin for dynamically loaded library\r\n    minor: Can't open directory or file\r\nterminate called after throwing an instance of 'hdf5_tools::Exception'\r\n  what():  /Analyses/Basecall_2D_000/BaseCalled_template/Model: error in H5Dread\r\n\r\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\r\nnanopolish_test is a Catch v1.1 b3 host application.\r\nRun with -? for options\r\n\r\n-------------------------------------------------------------------------------\r\nhmm\r\n-------------------------------------------------------------------------------\r\nsrc/test/nanopolish_test.cpp:338\r\n...............................................................................\r\n\r\nsrc/test/nanopolish_test.cpp:338: FAILED:\r\ndue to a fatal error condition:\r\n  SIGABRT - Abort (abnormal termination) signal\r\n\r\n===============================================================================\r\ntest cases:   5 |   4 passed | 1 failed\r\nassertions: 434 | 433 passed | 1 failed\r\n\r\n```"}}
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