{"action":"created","issue":{"url":"https://api.github.com/repos/biopython/biopython/issues/867","repository_url":"https://api.github.com/repos/biopython/biopython","labels_url":"https://api.github.com/repos/biopython/biopython/issues/867/labels{/name}","comments_url":"https://api.github.com/repos/biopython/biopython/issues/867/comments","events_url":"https://api.github.com/repos/biopython/biopython/issues/867/events","html_url":"https://github.com/biopython/biopython/pull/867","id":163560212,"number":867,"title":"RNA alphabet for meme parsing","user":{"login":"zaidurrehman","id":16003428,"avatar_url":"https://avatars2.githubusercontent.com/u/16003428?v=4","gravatar_id":"","url":"https://api.github.com/users/zaidurrehman","html_url":"https://github.com/zaidurrehman","followers_url":"https://api.github.com/users/zaidurrehman/followers","following_url":"https://api.github.com/users/zaidurrehman/following{/other_user}","gists_url":"https://api.github.com/users/zaidurrehman/gists{/gist_id}","starred_url":"https://api.github.com/users/zaidurrehman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/zaidurrehman/subscriptions","organizations_url":"https://api.github.com/users/zaidurrehman/orgs","repos_url":"https://api.github.com/users/zaidurrehman/repos","events_url":"https://api.github.com/users/zaidurrehman/events{/privacy}","received_events_url":"https://api.github.com/users/zaidurrehman/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":10,"created_at":"2016-07-03T12:30:47Z","updated_at":"2017-10-24T11:06:44Z","closed_at":null,"author_association":"NONE","pull_request":{"url":"https://api.github.com/repos/biopython/biopython/pulls/867","html_url":"https://github.com/biopython/biopython/pull/867","diff_url":"https://github.com/biopython/biopython/pull/867.diff","patch_url":"https://github.com/biopython/biopython/pull/867.patch"},"body":"The latest meme tool also supports sequences with RNA alphabet. Biopython's meme parsing however only works for DNA alphabet. (Issue #865 )\nI have added a few lines to Bio/motifs/meme.py and Bio/motifs/matrix.py which ensure that the parser can also support the RNA alphabet. Though I have not made any changes to the latter file's docstring, which explicitly mentions that some of the methods are solely defined for DNA alphabet.\n\nI am attaching an example motif file with RNA alphabet. My proposed changes can be tested on this file.\n[meme.txt](https://github.com/biopython/biopython/files/345020/meme.txt)\n"},"comment":{"url":"https://api.github.com/repos/biopython/biopython/issues/comments/338954918","html_url":"https://github.com/biopython/biopython/pull/867#issuecomment-338954918","issue_url":"https://api.github.com/repos/biopython/biopython/issues/867","id":338954918,"user":{"login":"peterjc","id":63959,"avatar_url":"https://avatars2.githubusercontent.com/u/63959?v=4","gravatar_id":"","url":"https://api.github.com/users/peterjc","html_url":"https://github.com/peterjc","followers_url":"https://api.github.com/users/peterjc/followers","following_url":"https://api.github.com/users/peterjc/following{/other_user}","gists_url":"https://api.github.com/users/peterjc/gists{/gist_id}","starred_url":"https://api.github.com/users/peterjc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/peterjc/subscriptions","organizations_url":"https://api.github.com/users/peterjc/orgs","repos_url":"https://api.github.com/users/peterjc/repos","events_url":"https://api.github.com/users/peterjc/events{/privacy}","received_events_url":"https://api.github.com/users/peterjc/received_events","type":"User","site_admin":false},"created_at":"2017-10-24T11:06:44Z","updated_at":"2017-10-24T11:06:44Z","author_association":"OWNER","body":"@zaidurrehman do you want to be listed as ``Zaid ur Rehman`` (as on your GitHub profile), or ``Zaid Ur-Rehman`` (as in your message earlier)?"}}
{"actor":{"display_login":"peterjc"}}