{"action":"closed","issue":{"url":"https://api.github.com/repos/etal/cnvkit/issues/216","repository_url":"https://api.github.com/repos/etal/cnvkit","labels_url":"https://api.github.com/repos/etal/cnvkit/issues/216/labels{/name}","comments_url":"https://api.github.com/repos/etal/cnvkit/issues/216/comments","events_url":"https://api.github.com/repos/etal/cnvkit/issues/216/events","html_url":"https://github.com/etal/cnvkit/issues/216","id":227544244,"number":216,"title":"batch wgs: -n/--normal and -t/--targets (at least) must be given","user":{"login":"igordot","id":6363505,"avatar_url":"https://avatars2.githubusercontent.com/u/6363505?v=3","gravatar_id":"","url":"https://api.github.com/users/igordot","html_url":"https://github.com/igordot","followers_url":"https://api.github.com/users/igordot/followers","following_url":"https://api.github.com/users/igordot/following{/other_user}","gists_url":"https://api.github.com/users/igordot/gists{/gist_id}","starred_url":"https://api.github.com/users/igordot/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/igordot/subscriptions","organizations_url":"https://api.github.com/users/igordot/orgs","repos_url":"https://api.github.com/users/igordot/repos","events_url":"https://api.github.com/users/igordot/events{/privacy}","received_events_url":"https://api.github.com/users/igordot/received_events","type":"User","site_admin":false},"labels":[{"id":602253280,"url":"https://api.github.com/repos/etal/cnvkit/labels/documentation","name":"documentation","color":"0052cc","default":false}],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2017-05-10T01:38:45Z","updated_at":"2017-05-11T16:51:04Z","closed_at":"2017-05-11T16:51:04Z","body":"According to the docs (http://cnvkit.readthedocs.io/en/stable/nonhybrid.html), this should be the command for WGS:\r\n```\r\ncnvkit.py batch -m wgs -g data/access-5kb-mappable.hg19.bed --annotate refFlat.txt *.bam\r\n```\r\nBut when I do that, I get an error:\r\n```\r\nOptions -n/--normal and -t/--targets (at least) must be given to build a new reference if -r/--reference is not used.\r\n```\r\nIs that expected?"}}
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