{"action":"created","issue":{"url":"https://api.github.com/repos/jmanitz/kangar00/issues/26","repository_url":"https://api.github.com/repos/jmanitz/kangar00","labels_url":"https://api.github.com/repos/jmanitz/kangar00/issues/26/labels{/name}","comments_url":"https://api.github.com/repos/jmanitz/kangar00/issues/26/comments","events_url":"https://api.github.com/repos/jmanitz/kangar00/issues/26/events","html_url":"https://github.com/jmanitz/kangar00/issues/26","id":284619251,"number":26,"title":"Warning message: LKMT test option 'davies'","user":{"login":"jmanitz","id":11335303,"avatar_url":"https://avatars0.githubusercontent.com/u/11335303?v=4","gravatar_id":"","url":"https://api.github.com/users/jmanitz","html_url":"https://github.com/jmanitz","followers_url":"https://api.github.com/users/jmanitz/followers","following_url":"https://api.github.com/users/jmanitz/following{/other_user}","gists_url":"https://api.github.com/users/jmanitz/gists{/gist_id}","starred_url":"https://api.github.com/users/jmanitz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jmanitz/subscriptions","organizations_url":"https://api.github.com/users/jmanitz/orgs","repos_url":"https://api.github.com/users/jmanitz/repos","events_url":"https://api.github.com/users/jmanitz/events{/privacy}","received_events_url":"https://api.github.com/users/jmanitz/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"jmanitz","id":11335303,"avatar_url":"https://avatars0.githubusercontent.com/u/11335303?v=4","gravatar_id":"","url":"https://api.github.com/users/jmanitz","html_url":"https://github.com/jmanitz","followers_url":"https://api.github.com/users/jmanitz/followers","following_url":"https://api.github.com/users/jmanitz/following{/other_user}","gists_url":"https://api.github.com/users/jmanitz/gists{/gist_id}","starred_url":"https://api.github.com/users/jmanitz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jmanitz/subscriptions","organizations_url":"https://api.github.com/users/jmanitz/orgs","repos_url":"https://api.github.com/users/jmanitz/repos","events_url":"https://api.github.com/users/jmanitz/events{/privacy}","received_events_url":"https://api.github.com/users/jmanitz/received_events","type":"User","site_admin":false},"assignees":[{"login":"jmanitz","id":11335303,"avatar_url":"https://avatars0.githubusercontent.com/u/11335303?v=4","gravatar_id":"","url":"https://api.github.com/users/jmanitz","html_url":"https://github.com/jmanitz","followers_url":"https://api.github.com/users/jmanitz/followers","following_url":"https://api.github.com/users/jmanitz/following{/other_user}","gists_url":"https://api.github.com/users/jmanitz/gists{/gist_id}","starred_url":"https://api.github.com/users/jmanitz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jmanitz/subscriptions","organizations_url":"https://api.github.com/users/jmanitz/orgs","repos_url":"https://api.github.com/users/jmanitz/repos","events_url":"https://api.github.com/users/jmanitz/events{/privacy}","received_events_url":"https://api.github.com/users/jmanitz/received_events","type":"User","site_admin":false},{"login":"sfriedrichs","id":11335343,"avatar_url":"https://avatars2.githubusercontent.com/u/11335343?v=4","gravatar_id":"","url":"https://api.github.com/users/sfriedrichs","html_url":"https://github.com/sfriedrichs","followers_url":"https://api.github.com/users/sfriedrichs/followers","following_url":"https://api.github.com/users/sfriedrichs/following{/other_user}","gists_url":"https://api.github.com/users/sfriedrichs/gists{/gist_id}","starred_url":"https://api.github.com/users/sfriedrichs/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sfriedrichs/subscriptions","organizations_url":"https://api.github.com/users/sfriedrichs/orgs","repos_url":"https://api.github.com/users/sfriedrichs/repos","events_url":"https://api.github.com/users/sfriedrichs/events{/privacy}","received_events_url":"https://api.github.com/users/sfriedrichs/received_events","type":"User","site_admin":false},{"login":"patriciaburger","id":11388004,"avatar_url":"https://avatars1.githubusercontent.com/u/11388004?v=4","gravatar_id":"","url":"https://api.github.com/users/patriciaburger","html_url":"https://github.com/patriciaburger","followers_url":"https://api.github.com/users/patriciaburger/followers","following_url":"https://api.github.com/users/patriciaburger/following{/other_user}","gists_url":"https://api.github.com/users/patriciaburger/gists{/gist_id}","starred_url":"https://api.github.com/users/patriciaburger/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/patriciaburger/subscriptions","organizations_url":"https://api.github.com/users/patriciaburger/orgs","repos_url":"https://api.github.com/users/patriciaburger/repos","events_url":"https://api.github.com/users/patriciaburger/events{/privacy}","received_events_url":"https://api.github.com/users/patriciaburger/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2017-12-26T22:49:24Z","updated_at":"2017-12-27T10:22:04Z","closed_at":null,"author_association":"OWNER","body":"This warning message needs to be fixed or better explanation\r\n\r\nlkmt_test(pheno ~ sex + age, net.kernel.hsa04020, gwas, method='davies')\r\nAn object of class lkmt:\r\nGWAS data: example study \r\nKernel: network \r\nPathway: hsa04020 \r\n\r\nThe score test results in the p-value:  0.3661713 \r\n\r\nWarning message:\r\nIn davies(Q, lambda, rep(1, length(lambda)), rep(0, length(lambda)),  :\r\n  imaginary parts discarded in coercion"},"comment":{"url":"https://api.github.com/repos/jmanitz/kangar00/issues/comments/354091592","html_url":"https://github.com/jmanitz/kangar00/issues/26#issuecomment-354091592","issue_url":"https://api.github.com/repos/jmanitz/kangar00/issues/26","id":354091592,"user":{"login":"hofnerb","id":8823088,"avatar_url":"https://avatars3.githubusercontent.com/u/8823088?v=4","gravatar_id":"","url":"https://api.github.com/users/hofnerb","html_url":"https://github.com/hofnerb","followers_url":"https://api.github.com/users/hofnerb/followers","following_url":"https://api.github.com/users/hofnerb/following{/other_user}","gists_url":"https://api.github.com/users/hofnerb/gists{/gist_id}","starred_url":"https://api.github.com/users/hofnerb/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hofnerb/subscriptions","organizations_url":"https://api.github.com/users/hofnerb/orgs","repos_url":"https://api.github.com/users/hofnerb/repos","events_url":"https://api.github.com/users/hofnerb/events{/privacy}","received_events_url":"https://api.github.com/users/hofnerb/received_events","type":"User","site_admin":false},"created_at":"2017-12-27T10:22:04Z","updated_at":"2017-12-27T10:22:04Z","author_association":"COLLABORATOR","body":"alternatively, if the warning is not important we could suppress it"}}
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