{"action":"created","issue":{"url":"https://api.github.com/repos/cortex-lab/KiloSort/issues/83","repository_url":"https://api.github.com/repos/cortex-lab/KiloSort","labels_url":"https://api.github.com/repos/cortex-lab/KiloSort/issues/83/labels{/name}","comments_url":"https://api.github.com/repos/cortex-lab/KiloSort/issues/83/comments","events_url":"https://api.github.com/repos/cortex-lab/KiloSort/issues/83/events","html_url":"https://github.com/cortex-lab/KiloSort/issues/83","id":249120008,"number":83,"title":"Assertion Error","user":{"login":"adede1988","id":30808263,"avatar_url":"https://avatars1.githubusercontent.com/u/30808263?v=4","gravatar_id":"","url":"https://api.github.com/users/adede1988","html_url":"https://github.com/adede1988","followers_url":"https://api.github.com/users/adede1988/followers","following_url":"https://api.github.com/users/adede1988/following{/other_user}","gists_url":"https://api.github.com/users/adede1988/gists{/gist_id}","starred_url":"https://api.github.com/users/adede1988/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/adede1988/subscriptions","organizations_url":"https://api.github.com/users/adede1988/orgs","repos_url":"https://api.github.com/users/adede1988/repos","events_url":"https://api.github.com/users/adede1988/events{/privacy}","received_events_url":"https://api.github.com/users/adede1988/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2017-08-09T18:26:44Z","updated_at":"2017-08-27T16:58:05Z","closed_at":null,"body":"kiloSort seems to run fine, but I get an \"Assertion Error\" when I try to open the phy gui. I can open the phy gui when I open it on simulated data from the eMouse, but it won't open when I'm trying to run it on my data. Any thoughts on things I might try? I've already rerun kiloSort from scratch a second time and tried again, but to no avail. "},"comment":{"url":"https://api.github.com/repos/cortex-lab/KiloSort/issues/comments/325210627","html_url":"https://github.com/cortex-lab/KiloSort/issues/83#issuecomment-325210627","issue_url":"https://api.github.com/repos/cortex-lab/KiloSort/issues/83","id":325210627,"user":{"login":"nsteinme","id":7590975,"avatar_url":"https://avatars0.githubusercontent.com/u/7590975?v=4","gravatar_id":"","url":"https://api.github.com/users/nsteinme","html_url":"https://github.com/nsteinme","followers_url":"https://api.github.com/users/nsteinme/followers","following_url":"https://api.github.com/users/nsteinme/following{/other_user}","gists_url":"https://api.github.com/users/nsteinme/gists{/gist_id}","starred_url":"https://api.github.com/users/nsteinme/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nsteinme/subscriptions","organizations_url":"https://api.github.com/users/nsteinme/orgs","repos_url":"https://api.github.com/users/nsteinme/repos","events_url":"https://api.github.com/users/nsteinme/events{/privacy}","received_events_url":"https://api.github.com/users/nsteinme/received_events","type":"User","site_admin":false},"created_at":"2017-08-27T16:58:05Z","updated_at":"2017-08-27T16:58:05Z","body":"Did you change anything about the PC features in the config file? This line:\r\ndd                  = load('PCspikes2.mat'); \r\nIf you did, I suspect you used something that's the wrong size? \r\n\r\nAnother possibility is that zero spikes have been found - what is the size of spike_times.npy? \r\n\r\nYet another possibility is that you only have one channel in your data and there's a bug related to that - how many channels in your data file? \r\n\r\npc_features is supposed to be size [nSpikes, nFeaturesPerChannel, nPCFeatures] where nFeaturesPerChannel=3 and nPCFeatures is whatever you set ops.nNeighPCs to be. Given that information can you identify which dimension is the missing one? "}}
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