{"action":"created","issue":{"url":"https://api.github.com/repos/nelpy/nelpy/issues/164","repository_url":"https://api.github.com/repos/nelpy/nelpy","labels_url":"https://api.github.com/repos/nelpy/nelpy/issues/164/labels{/name}","comments_url":"https://api.github.com/repos/nelpy/nelpy/issues/164/comments","events_url":"https://api.github.com/repos/nelpy/nelpy/issues/164/events","html_url":"https://github.com/nelpy/nelpy/issues/164","id":217456915,"number":164,"title":"Basic Trodes support for nelpy","user":{"login":"shayokdutta","id":6528643,"avatar_url":"https://avatars3.githubusercontent.com/u/6528643?v=4","gravatar_id":"","url":"https://api.github.com/users/shayokdutta","html_url":"https://github.com/shayokdutta","followers_url":"https://api.github.com/users/shayokdutta/followers","following_url":"https://api.github.com/users/shayokdutta/following{/other_user}","gists_url":"https://api.github.com/users/shayokdutta/gists{/gist_id}","starred_url":"https://api.github.com/users/shayokdutta/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/shayokdutta/subscriptions","organizations_url":"https://api.github.com/users/shayokdutta/orgs","repos_url":"https://api.github.com/users/shayokdutta/repos","events_url":"https://api.github.com/users/shayokdutta/events{/privacy}","received_events_url":"https://api.github.com/users/shayokdutta/received_events","type":"User","site_admin":false},"labels":[{"id":508332413,"url":"https://api.github.com/repos/nelpy/nelpy/labels/enhancement","name":"enhancement","color":"84b6eb","default":true},{"id":508332414,"url":"https://api.github.com/repos/nelpy/nelpy/labels/help%20wanted","name":"help wanted","color":"128A0C","default":true}],"state":"closed","locked":false,"assignee":{"login":"shayokdutta","id":6528643,"avatar_url":"https://avatars3.githubusercontent.com/u/6528643?v=4","gravatar_id":"","url":"https://api.github.com/users/shayokdutta","html_url":"https://github.com/shayokdutta","followers_url":"https://api.github.com/users/shayokdutta/followers","following_url":"https://api.github.com/users/shayokdutta/following{/other_user}","gists_url":"https://api.github.com/users/shayokdutta/gists{/gist_id}","starred_url":"https://api.github.com/users/shayokdutta/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/shayokdutta/subscriptions","organizations_url":"https://api.github.com/users/shayokdutta/orgs","repos_url":"https://api.github.com/users/shayokdutta/repos","events_url":"https://api.github.com/users/shayokdutta/events{/privacy}","received_events_url":"https://api.github.com/users/shayokdutta/received_events","type":"User","site_admin":false},"assignees":[{"login":"shayokdutta","id":6528643,"avatar_url":"https://avatars3.githubusercontent.com/u/6528643?v=4","gravatar_id":"","url":"https://api.github.com/users/shayokdutta","html_url":"https://github.com/shayokdutta","followers_url":"https://api.github.com/users/shayokdutta/followers","following_url":"https://api.github.com/users/shayokdutta/following{/other_user}","gists_url":"https://api.github.com/users/shayokdutta/gists{/gist_id}","starred_url":"https://api.github.com/users/shayokdutta/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/shayokdutta/subscriptions","organizations_url":"https://api.github.com/users/shayokdutta/orgs","repos_url":"https://api.github.com/users/shayokdutta/repos","events_url":"https://api.github.com/users/shayokdutta/events{/privacy}","received_events_url":"https://api.github.com/users/shayokdutta/received_events","type":"User","site_admin":false}],"milestone":null,"comments":3,"created_at":"2017-03-28T06:06:08Z","updated_at":"2017-10-15T16:53:17Z","closed_at":"2017-10-15T16:36:02Z","author_association":"COLLABORATOR","body":"It'd be nice to have Trodes support. SpikeGadgets currently offers a toolbox for MATLAB to load the data in directly from the .rec files. See http://spikegadgets.com/software/matlab_toolbox.html.\r\n\r\nWhat I want to have is:<br>\r\n1. Importing of Trodes raw data from .rec file (both auxiliary signals and headstage input) and video files into Python (not currently supported see comment below)\r\n2. Loading up of data into nelpy objects\r\n\r\nOverall, this may need to spawn off into a feature branch if we try to create support for all of the .rec export functionality (see Note 4) but I doubt we'll have many issues with merge conflicts at the moment as this will be in a separate file. \r\n\r\nNotes:<br>\r\n1. For (1) it would be nice if these two data sets (video and raw recordings) were \"coordinated\" in terms of sample numbers. Preliminary code for this exists with the Cavaradossi Novel Object Test recording but I don't think this is cleaned up or efficiently stored. \r\n\r\n2. Shouldn't be overly difficult to do this completely. Functions don't look too long to convert from MATLAB to Python.\r\n\r\nhttps://bitbucket.org/mkarlsso/trodes/src/69159417549c/TrodesToMatlab/?at=develop\r\n\r\n3.  Be sure to double check filtering in data extraction. Trodes itself has a IIR filter prior to LFP being sent to modules. If this is important in analysis, this should be checked and made sure that extraction works this way. Not sure if this is done by the MATLAB code. I think the code online currently gives access to the raw data only not the filtered data that is sent to the modules.\r\n\r\n4. It may be worth looking into getting the spike data and whatnot supported as well but that can be another issue."},"comment":{"url":"https://api.github.com/repos/nelpy/nelpy/issues/comments/336724864","html_url":"https://github.com/nelpy/nelpy/issues/164#issuecomment-336724864","issue_url":"https://api.github.com/repos/nelpy/nelpy/issues/164","id":336724864,"user":{"login":"shayokdutta","id":6528643,"avatar_url":"https://avatars3.githubusercontent.com/u/6528643?v=4","gravatar_id":"","url":"https://api.github.com/users/shayokdutta","html_url":"https://github.com/shayokdutta","followers_url":"https://api.github.com/users/shayokdutta/followers","following_url":"https://api.github.com/users/shayokdutta/following{/other_user}","gists_url":"https://api.github.com/users/shayokdutta/gists{/gist_id}","starred_url":"https://api.github.com/users/shayokdutta/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/shayokdutta/subscriptions","organizations_url":"https://api.github.com/users/shayokdutta/orgs","repos_url":"https://api.github.com/users/shayokdutta/repos","events_url":"https://api.github.com/users/shayokdutta/events{/privacy}","received_events_url":"https://api.github.com/users/shayokdutta/received_events","type":"User","site_admin":false},"created_at":"2017-10-15T16:53:17Z","updated_at":"2017-10-15T16:53:17Z","author_association":"COLLABORATOR","body":"The feature branch for this is also complete as far as stuff that I\nwanted/needed\n\nOn Sun, Oct 15, 2017 at 11:36 AM, Etienne Ackermann <\nnotifications@github.com> wrote:\n\n> Closed #164 <https://github.com/nelpy/nelpy/issues/164>.\n>\n> —\n> You are receiving this because you were assigned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/nelpy/nelpy/issues/164#event-1293799506>, or mute the\n> thread\n> <https://github.com/notifications/unsubscribe-auth/AGOeg4B5gtBxDPcEpLugBKgHdfCzcyDrks5ssjRzgaJpZM4MrLVo>\n> .\n>\n\n\n\n-- \n*Shayok Dutta*\n\n*-----Expect Greatness-----*\n*-----Become Legendary-----*\n"}}
{"actor":{"display_login":"shayokdutta"}}