{"push_id":1633153679,"size":19,"distinct_size":19,"ref":"refs/heads/master","head":"b8b213ccd578f25b10022ed36a32ec27b76fc3ea","before":"1e9eec44ab70073ec7be091f02eddda23c6e2ca9","commits":[{"sha":"4e0b4b2298ea1b66570a32265c71e6644609d06c","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"UNTESTED new config for MultiQC.\n\nShould trim off _R1 and _R2 from sample names, meaning that we get one row per sample in the general stats table.\n\nAlso added a comment at the top of the report saying that it came from the NGI-RNAseq pipeline, with a link to the docs.\n\nNB: Not tested with Nextflow\nNB: May break when used with funk account, which has an alias for multiqc with a -c config file. Not sure what happens when you use -c twice.","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/4e0b4b2298ea1b66570a32265c71e6644609d06c"},{"sha":"e513dbcf9094cbc3d8dce608f92ad646e71d2088","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Renamed incorrect variable name in MultiQC config file.","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/e513dbcf9094cbc3d8dce608f92ad646e71d2088"},{"sha":"edf85cba9d6893bc4ed1772f1cbd90aa6385ac2a","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Added new config option for printing swedac logo in MultiQC reports","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/edf85cba9d6893bc4ed1772f1cbd90aa6385ac2a"},{"sha":"3d643a015ce580a9696433e9826c713e558a167b","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Copy MultiQC config into wd instead of using -c\n\nStops it from breaking multiqc alias that already has -c in it.","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/3d643a015ce580a9696433e9826c713e558a167b"},{"sha":"a5ed75ef4903f97d73a956e4f72f690530835a3a","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Got TrimGalore to run FastQC after trimming.","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/a5ed75ef4903f97d73a956e4f72f690530835a3a"},{"sha":"98c47a3f7a5e657992d0771d47e8db95f414d777","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Updated Travis config to work with host repo (not just @Galithil)","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/98c47a3f7a5e657992d0771d47e8db95f414d777"},{"sha":"872f17789f5f076f78aa49602eee9353023c166f","author":{"name":"Rickard Hammarén","email":"0ece4fc8c733ca297ad7ab1d31adfcafc60a212c@scilifelab.se"},"message":"Updated MultiQC to 0.9","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/872f17789f5f076f78aa49602eee9353023c166f"},{"sha":"cba054dcefd8d49f4a171f14817b2a5f45236602","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Made test scripts a little more friendly for repeated local testing.","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/cba054dcefd8d49f4a171f14817b2a5f45236602"},{"sha":"59da7125b116bdb608a1d4943ca4c37dd40d3b1f","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Minor docs updates.","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/59da7125b116bdb608a1d4943ca4c37dd40d3b1f"},{"sha":"b5ce9638ff8876c49c1d307b43f3984301443d62","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Print exact command in log in test scripts.","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/b5ce9638ff8876c49c1d307b43f3984301443d62"},{"sha":"280f91c6a94ce16e5cba1f37cdc4d639029f7dee","author":{"name":"Hammarn","email":"0ece4fc8c733ca297ad7ab1d31adfcafc60a212c@scilifelab.se"},"message":"cleaned up the tag expression","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/280f91c6a94ce16e5cba1f37cdc4d639029f7dee"},{"sha":"79752459b48a5efcb2b0752f39d470765b37162a","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Documented trimming params. Added preset for Pico kits.","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/79752459b48a5efcb2b0752f39d470765b37162a"},{"sha":"26a6da3d3ed28ed6af687129f05afb2613e4300a","author":{"name":"Rickard Hammarén","email":"0ece4fc8c733ca297ad7ab1d31adfcafc60a212c@scilifelab.se"},"message":"Updated MultiQC version inuppmax-devel as well","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/26a6da3d3ed28ed6af687129f05afb2613e4300a"},{"sha":"beb7af18e0dcc2c6c1350a1efdf8b8490d08ed0f","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Cleaned up docker testing more.\n\n* Profiles and config renamed to 'testing' instead of 'docker_test'\n* Removed hardlinked paths to references used in config, so local testing data directory works properly\n* Specify all reference paths in command when running","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/beb7af18e0dcc2c6c1350a1efdf8b8490d08ed0f"},{"sha":"abe2824f449fe3f4ac119871cc0ac89a24ea858b","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Rewrote Dockerfile to minimise number of RUN statements.","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/abe2824f449fe3f4ac119871cc0ac89a24ea858b"},{"sha":"9b9ac9f3bb06a9f2a2fb3305f253216e7f1caa1a","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Resized and renamed NGI logo. Adjusted footers. Added @Galithil to credits.","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/9b9ac9f3bb06a9f2a2fb3305f253216e7f1caa1a"},{"sha":"e279def1b6f108ff39e8cf2b62f504743877d62c","author":{"name":"Rickard Hammarén","email":"0ece4fc8c733ca297ad7ab1d31adfcafc60a212c@scilifelab.se"},"message":"updated stringtie to latest version","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/e279def1b6f108ff39e8cf2b62f504743877d62c"},{"sha":"d2ccdc1c53adcc05414b889152598e2feb4873f0","author":{"name":"Rickard Hammarén","email":"0ece4fc8c733ca297ad7ab1d31adfcafc60a212c@scilifelab.se"},"message":"Merge branch 'master' of github.com:SciLifeLab/NGI-RNAseq into stringTie","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/d2ccdc1c53adcc05414b889152598e2feb4873f0"},{"sha":"b8b213ccd578f25b10022ed36a32ec27b76fc3ea","author":{"name":"Phil Ewels","email":"e1a97a7750fbc8e62ee7aaf23a1a20005b71994b@scilifelab.se"},"message":"Merge pull request #96 from Hammarn/stringTie\n\nString tie","distinct":true,"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/commits/b8b213ccd578f25b10022ed36a32ec27b76fc3ea"}]}
{"actor":{"display_login":"ewels"}}