{"action":"created","issue":{"url":"https://api.github.com/repos/bio-tools/biotoolsSchema/issues/2","repository_url":"https://api.github.com/repos/bio-tools/biotoolsSchema","labels_url":"https://api.github.com/repos/bio-tools/biotoolsSchema/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/bio-tools/biotoolsSchema/issues/2/comments","events_url":"https://api.github.com/repos/bio-tools/biotoolsSchema/issues/2/events","html_url":"https://github.com/bio-tools/biotoolsSchema/issues/2","id":118855955,"number":2,"title":"Multiple EDAM concepts needed for a single output + operation|data|format HANDLES","user":{"login":"matuskalas","id":992660,"avatar_url":"https://avatars0.githubusercontent.com/u/992660?v=4","gravatar_id":"","url":"https://api.github.com/users/matuskalas","html_url":"https://github.com/matuskalas","followers_url":"https://api.github.com/users/matuskalas/followers","following_url":"https://api.github.com/users/matuskalas/following{/other_user}","gists_url":"https://api.github.com/users/matuskalas/gists{/gist_id}","starred_url":"https://api.github.com/users/matuskalas/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/matuskalas/subscriptions","organizations_url":"https://api.github.com/users/matuskalas/orgs","repos_url":"https://api.github.com/users/matuskalas/repos","events_url":"https://api.github.com/users/matuskalas/events{/privacy}","received_events_url":"https://api.github.com/users/matuskalas/received_events","type":"User","site_admin":false},"labels":[{"id":207902169,"url":"https://api.github.com/repos/bio-tools/biotoolsSchema/labels/enhancement","name":"enhancement","color":"84b6eb","default":true}],"state":"open","locked":false,"assignee":{"login":"joncison","id":1506863,"avatar_url":"https://avatars2.githubusercontent.com/u/1506863?v=4","gravatar_id":"","url":"https://api.github.com/users/joncison","html_url":"https://github.com/joncison","followers_url":"https://api.github.com/users/joncison/followers","following_url":"https://api.github.com/users/joncison/following{/other_user}","gists_url":"https://api.github.com/users/joncison/gists{/gist_id}","starred_url":"https://api.github.com/users/joncison/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/joncison/subscriptions","organizations_url":"https://api.github.com/users/joncison/orgs","repos_url":"https://api.github.com/users/joncison/repos","events_url":"https://api.github.com/users/joncison/events{/privacy}","received_events_url":"https://api.github.com/users/joncison/received_events","type":"User","site_admin":false},"assignees":[{"login":"joncison","id":1506863,"avatar_url":"https://avatars2.githubusercontent.com/u/1506863?v=4","gravatar_id":"","url":"https://api.github.com/users/joncison","html_url":"https://github.com/joncison","followers_url":"https://api.github.com/users/joncison/followers","following_url":"https://api.github.com/users/joncison/following{/other_user}","gists_url":"https://api.github.com/users/joncison/gists{/gist_id}","starred_url":"https://api.github.com/users/joncison/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/joncison/subscriptions","organizations_url":"https://api.github.com/users/joncison/orgs","repos_url":"https://api.github.com/users/joncison/repos","events_url":"https://api.github.com/users/joncison/events{/privacy}","received_events_url":"https://api.github.com/users/joncison/received_events","type":"User","site_admin":false}],"milestone":null,"comments":3,"created_at":"2015-11-25T15:08:06Z","updated_at":"2017-11-10T12:32:01Z","closed_at":null,"author_association":"MEMBER","body":"Yet another example where multiple concepts are needed for 1 output is Meta-pipe, generating annotation of (meta)genome assembly (contigs) with found protein-coding genes, protein domains, and information about those, such as taxa, DB hits scores, etc.\nThe 1-only chosen type of data \"Protein features\" is very far from this in its generalisation, isn't it?\n"},"comment":{"url":"https://api.github.com/repos/bio-tools/biotoolsSchema/issues/comments/343461805","html_url":"https://github.com/bio-tools/biotoolsSchema/issues/2#issuecomment-343461805","issue_url":"https://api.github.com/repos/bio-tools/biotoolsSchema/issues/2","id":343461805,"user":{"login":"joncison","id":1506863,"avatar_url":"https://avatars2.githubusercontent.com/u/1506863?v=4","gravatar_id":"","url":"https://api.github.com/users/joncison","html_url":"https://github.com/joncison","followers_url":"https://api.github.com/users/joncison/followers","following_url":"https://api.github.com/users/joncison/following{/other_user}","gists_url":"https://api.github.com/users/joncison/gists{/gist_id}","starred_url":"https://api.github.com/users/joncison/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/joncison/subscriptions","organizations_url":"https://api.github.com/users/joncison/orgs","repos_url":"https://api.github.com/users/joncison/repos","events_url":"https://api.github.com/users/joncison/events{/privacy}","received_events_url":"https://api.github.com/users/joncison/received_events","type":"User","site_admin":false},"created_at":"2017-11-10T12:32:01Z","updated_at":"2017-11-10T12:32:01Z","author_association":"COLLABORATOR","body":"As for the other issue (multiple - but currently single - data for a given I/O) there are two cases to distinguish.\r\n\r\n1. Where we have an input or output which can be specified in two ways, say a sequence which can be given as raw sequence or via an identifier.  The current advice (http://biotools.readthedocs.io/en/latest/curators_guide.html#data-type-input-and-output-data) is to just specify one (the data term, not the data->identifier).  I'm open to changing that, via a trivial update to the model, which is currently:\r\n![capture](https://user-images.githubusercontent.com/1506863/32658336-65348336-c611-11e7-876d-b56e85f37af1.PNG)\r\n\r\nbut could be:\r\n![capture](https://user-images.githubusercontent.com/1506863/32658370-8e8cfb96-c611-11e7-93e5-bc74d4994f52.PNG)\r\n\r\n2. The second case is where we have complex data (but in a single file or blob) which could be described by more than one EDAM concept.  I'm loath to support fine-grained annotation of such, because I think it opens a can of worms in various ways, and also would create a usability issue if we went with option 1. above (how to disambiguate these two cases ??)  I think the general advice (point 3 of http://biotools.readthedocs.io/en/latest/curators_guide.html#id13) holds, in the example in the OP, the most specific term (currently at least) would be _Genome report_ or _Sequence report_.  \r\n\r\ncc @hansioan @matuskalas : what do you think\r\n\r\n"}}
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