{"action":"created","issue":{"url":"https://api.github.com/repos/compomics/peptide-shaker/issues/266","repository_url":"https://api.github.com/repos/compomics/peptide-shaker","labels_url":"https://api.github.com/repos/compomics/peptide-shaker/issues/266/labels{/name}","comments_url":"https://api.github.com/repos/compomics/peptide-shaker/issues/266/comments","events_url":"https://api.github.com/repos/compomics/peptide-shaker/issues/266/events","html_url":"https://github.com/compomics/peptide-shaker/issues/266","id":231039572,"number":266,"title":"Error","user":{"login":"kimstellies","id":28925580,"avatar_url":"https://avatars3.githubusercontent.com/u/28925580?v=3","gravatar_id":"","url":"https://api.github.com/users/kimstellies","html_url":"https://github.com/kimstellies","followers_url":"https://api.github.com/users/kimstellies/followers","following_url":"https://api.github.com/users/kimstellies/following{/other_user}","gists_url":"https://api.github.com/users/kimstellies/gists{/gist_id}","starred_url":"https://api.github.com/users/kimstellies/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kimstellies/subscriptions","organizations_url":"https://api.github.com/users/kimstellies/orgs","repos_url":"https://api.github.com/users/kimstellies/repos","events_url":"https://api.github.com/users/kimstellies/events{/privacy}","received_events_url":"https://api.github.com/users/kimstellies/received_events","type":"User","site_admin":false},"labels":[{"id":251120700,"url":"https://api.github.com/repos/compomics/peptide-shaker/labels/bug","name":"bug","color":"fc2929","default":true}],"state":"open","locked":false,"assignee":{"login":"hbarsnes","id":13151214,"avatar_url":"https://avatars2.githubusercontent.com/u/13151214?v=3","gravatar_id":"","url":"https://api.github.com/users/hbarsnes","html_url":"https://github.com/hbarsnes","followers_url":"https://api.github.com/users/hbarsnes/followers","following_url":"https://api.github.com/users/hbarsnes/following{/other_user}","gists_url":"https://api.github.com/users/hbarsnes/gists{/gist_id}","starred_url":"https://api.github.com/users/hbarsnes/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hbarsnes/subscriptions","organizations_url":"https://api.github.com/users/hbarsnes/orgs","repos_url":"https://api.github.com/users/hbarsnes/repos","events_url":"https://api.github.com/users/hbarsnes/events{/privacy}","received_events_url":"https://api.github.com/users/hbarsnes/received_events","type":"User","site_admin":false},"assignees":[{"login":"hbarsnes","id":13151214,"avatar_url":"https://avatars2.githubusercontent.com/u/13151214?v=3","gravatar_id":"","url":"https://api.github.com/users/hbarsnes","html_url":"https://github.com/hbarsnes","followers_url":"https://api.github.com/users/hbarsnes/followers","following_url":"https://api.github.com/users/hbarsnes/following{/other_user}","gists_url":"https://api.github.com/users/hbarsnes/gists{/gist_id}","starred_url":"https://api.github.com/users/hbarsnes/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hbarsnes/subscriptions","organizations_url":"https://api.github.com/users/hbarsnes/orgs","repos_url":"https://api.github.com/users/hbarsnes/repos","events_url":"https://api.github.com/users/hbarsnes/events{/privacy}","received_events_url":"https://api.github.com/users/hbarsnes/received_events","type":"User","site_admin":false}],"milestone":null,"comments":5,"created_at":"2017-05-24T13:27:48Z","updated_at":"2017-05-24T15:48:45Z","closed_at":null,"body":"Hi\r\n\r\nWhen it try to load search results from searchGUI into peptide shaker i get this error and it won't load any data.  Any ideas how i should proceed?\r\n\r\nThanks\r\nKim\r\n\r\nWed May 24 15:09:50 CAT 2017: PeptideShaker version 1.16.9.\r\nMemory given to the Java virtual machine: 1037959168.\r\nTotal amount of memory in the Java virtual machine: 129761280.\r\nFree memory: 95251760.\r\nJava version: 1.8.0_131.\r\n1714 script command tokens\r\n(C) 2009 Jmol Development\r\nJmol Version: 12.0.43  2011-05-03 14:21\r\njava.vendor: Oracle Corporation\r\njava.version: 1.8.0_131\r\nos.name: Windows 7\r\nmemory: 21.8/129.9\r\nprocessors available: 8\r\nuseCommandThread: false\r\n<CompomicsError>PeptideShaker processing failed. See the PeptideShaker log for details.</CompomicsError>\r\njava.lang.NullPointerException\r\n\tat com.compomics.util.db.ObjectsCache.addObject(ObjectsCache.java:313)\r\n\tat com.compomics.util.db.ObjectsDB.loadObjects(ObjectsDB.java:843)\r\n\tat com.compomics.util.db.ObjectsDB.loadObjects(ObjectsDB.java:737)\r\n\tat com.compomics.util.experiment.identification.IdentificationDB.loadSpectrumMatches(IdentificationDB.java:858)\r\n\tat com.compomics.util.experiment.identification.Identification.loadSpectrumMatches(Identification.java:241)\r\n\tat com.compomics.util.experiment.identification.matches_iterators.PsmIterator.checkBuffer(PsmIterator.java:280)\r\n\tat com.compomics.util.experiment.identification.matches_iterators.PsmIterator.next(PsmIterator.java:241)\r\n\tat eu.isas.peptideshaker.PeptideShaker.attachAssumptionsProbabilities(PeptideShaker.java:680)\r\n\tat eu.isas.peptideshaker.PeptideShaker.processIdentifications(PeptideShaker.java:324)\r\n\tat eu.isas.peptideshaker.fileimport.FileImporter$IdProcessorFromFile.importFiles(FileImporter.java:548)\r\n\tat eu.isas.peptideshaker.fileimport.FileImporter$IdProcessorFromFile.doInBackground(FileImporter.java:432)\r\n\tat javax.swing.SwingWorker$1.call(Unknown Source)\r\n\tat java.util.concurrent.FutureTask.run(Unknown Source)\r\n\tat javax.swing.SwingWorker.run(Unknown Source)\r\n\tat java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)\r\n\tat java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)\r\n\tat java.lang.Thread.run(Unknown Source)\r\nFree memory: 448625896\r\n<CompomicsError>PeptideShaker processing failed. See the PeptideShaker log for details.</CompomicsError>\r\njava.lang.NullPointerException\r\n\tat com.compomics.util.db.ObjectsCache.addObject(ObjectsCache.java:313)\r\n\tat com.compomics.util.db.ObjectsDB.loadObjects(ObjectsDB.java:843)\r\n\tat com.compomics.util.db.ObjectsDB.loadObjects(ObjectsDB.java:737)\r\n\tat com.compomics.util.experiment.identification.IdentificationDB.loadSpectrumMatches(IdentificationDB.java:858)\r\n\tat com.compomics.util.experiment.identification.Identification.loadSpectrumMatches(Identification.java:241)\r\n\tat com.compomics.util.experiment.identification.matches_iterators.PsmIterator.checkBuffer(PsmIterator.java:280)\r\n\tat com.compomics.util.experiment.identification.matches_iterators.PsmIterator.next(PsmIterator.java:241)\r\n\tat eu.isas.peptideshaker.PeptideShaker.attachAssumptionsProbabilities(PeptideShaker.java:680)\r\n\tat eu.isas.peptideshaker.PeptideShaker.processIdentifications(PeptideShaker.java:324)\r\n\tat eu.isas.peptideshaker.fileimport.FileImporter$IdProcessorFromFile.importFiles(FileImporter.java:548)\r\n\tat eu.isas.peptideshaker.fileimport.FileImporter$IdProcessorFromFile.doInBackground(FileImporter.java:432)\r\n\tat javax.swing.SwingWorker$1.call(Unknown Source)\r\n\tat java.util.concurrent.FutureTask.run(Unknown Source)\r\n\tat javax.swing.SwingWorker.run(Unknown Source)\r\n\tat java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)\r\n\tat java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)\r\n\tat java.lang.Thread.run(Unknown Source)\r\nFree memory: 450240912\r\n"},"comment":{"url":"https://api.github.com/repos/compomics/peptide-shaker/issues/comments/303766396","html_url":"https://github.com/compomics/peptide-shaker/issues/266#issuecomment-303766396","issue_url":"https://api.github.com/repos/compomics/peptide-shaker/issues/266","id":303766396,"user":{"login":"hbarsnes","id":13151214,"avatar_url":"https://avatars2.githubusercontent.com/u/13151214?v=3","gravatar_id":"","url":"https://api.github.com/users/hbarsnes","html_url":"https://github.com/hbarsnes","followers_url":"https://api.github.com/users/hbarsnes/followers","following_url":"https://api.github.com/users/hbarsnes/following{/other_user}","gists_url":"https://api.github.com/users/hbarsnes/gists{/gist_id}","starred_url":"https://api.github.com/users/hbarsnes/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hbarsnes/subscriptions","organizations_url":"https://api.github.com/users/hbarsnes/orgs","repos_url":"https://api.github.com/users/hbarsnes/repos","events_url":"https://api.github.com/users/hbarsnes/events{/privacy}","received_events_url":"https://api.github.com/users/hbarsnes/received_events","type":"User","site_admin":false},"created_at":"2017-05-24T15:48:45Z","updated_at":"2017-05-24T15:48:45Z","body":"Hi Kim,\r\n\r\nThanks for the data. I can load them without any problems on my end though. Could you try reloading the data to see if that solves the problem? In other words, if it's a reproducible issue or not?\r\n\r\nAlso, is there anything special with the setup of the computer your are using to load the data? For example, do you have any of the data on a network drive?\r\n\r\nBest regards,\r\nHarald"}}
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