{"action":"created","issue":{"url":"https://api.github.com/repos/timothyjamesbecker/SVE/issues/2","repository_url":"https://api.github.com/repos/timothyjamesbecker/SVE","labels_url":"https://api.github.com/repos/timothyjamesbecker/SVE/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/timothyjamesbecker/SVE/issues/2/comments","events_url":"https://api.github.com/repos/timothyjamesbecker/SVE/issues/2/events","html_url":"https://github.com/timothyjamesbecker/SVE/issues/2","id":270687882,"number":2,"title":"Normal/germline BAM?","user":{"login":"brucemoran","id":7450546,"avatar_url":"https://avatars0.githubusercontent.com/u/7450546?v=4","gravatar_id":"","url":"https://api.github.com/users/brucemoran","html_url":"https://github.com/brucemoran","followers_url":"https://api.github.com/users/brucemoran/followers","following_url":"https://api.github.com/users/brucemoran/following{/other_user}","gists_url":"https://api.github.com/users/brucemoran/gists{/gist_id}","starred_url":"https://api.github.com/users/brucemoran/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/brucemoran/subscriptions","organizations_url":"https://api.github.com/users/brucemoran/orgs","repos_url":"https://api.github.com/users/brucemoran/repos","events_url":"https://api.github.com/users/brucemoran/events{/privacy}","received_events_url":"https://api.github.com/users/brucemoran/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2017-11-02T15:05:25Z","updated_at":"2017-11-03T14:21:08Z","closed_at":null,"author_association":"NONE","body":"Hi Timothy,\r\n\r\nour early tests of SVE are good, very easy to work with. Wondering about support for germline/normal samples, have you considered this?\r\n\r\nThanks, Bruce."},"comment":{"url":"https://api.github.com/repos/timothyjamesbecker/SVE/issues/comments/341716755","html_url":"https://github.com/timothyjamesbecker/SVE/issues/2#issuecomment-341716755","issue_url":"https://api.github.com/repos/timothyjamesbecker/SVE/issues/2","id":341716755,"user":{"login":"timothyjamesbecker","id":4239385,"avatar_url":"https://avatars2.githubusercontent.com/u/4239385?v=4","gravatar_id":"","url":"https://api.github.com/users/timothyjamesbecker","html_url":"https://github.com/timothyjamesbecker","followers_url":"https://api.github.com/users/timothyjamesbecker/followers","following_url":"https://api.github.com/users/timothyjamesbecker/following{/other_user}","gists_url":"https://api.github.com/users/timothyjamesbecker/gists{/gist_id}","starred_url":"https://api.github.com/users/timothyjamesbecker/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/timothyjamesbecker/subscriptions","organizations_url":"https://api.github.com/users/timothyjamesbecker/orgs","repos_url":"https://api.github.com/users/timothyjamesbecker/repos","events_url":"https://api.github.com/users/timothyjamesbecker/events{/privacy}","received_events_url":"https://api.github.com/users/timothyjamesbecker/received_events","type":"User","site_admin":false},"created_at":"2017-11-03T14:21:08Z","updated_at":"2017-11-03T14:21:08Z","author_association":"OWNER","body":"Hello Bruce, did you mean tumor/normal samples?  If so, it has been considered and I am working words an alternate workflow that is similar to the auto.py script in that it would be able to process one tumor/normal sample thereby utilizing some additional mechanisms tailored for that purpose.  "}}
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