{"action":"created","issue":{"url":"https://api.github.com/repos/rdkit/rdkit/issues/762","repository_url":"https://api.github.com/repos/rdkit/rdkit","labels_url":"https://api.github.com/repos/rdkit/rdkit/issues/762/labels{/name}","comments_url":"https://api.github.com/repos/rdkit/rdkit/issues/762/comments","events_url":"https://api.github.com/repos/rdkit/rdkit/issues/762/events","html_url":"https://github.com/rdkit/rdkit/issues/762","id":132865525,"number":762,"title":"libRDBoost.so.1: undefined symbol","user":{"login":"kozo2","id":12192,"avatar_url":"https://avatars3.githubusercontent.com/u/12192?v=3","gravatar_id":"","url":"https://api.github.com/users/kozo2","html_url":"https://github.com/kozo2","followers_url":"https://api.github.com/users/kozo2/followers","following_url":"https://api.github.com/users/kozo2/following{/other_user}","gists_url":"https://api.github.com/users/kozo2/gists{/gist_id}","starred_url":"https://api.github.com/users/kozo2/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kozo2/subscriptions","organizations_url":"https://api.github.com/users/kozo2/orgs","repos_url":"https://api.github.com/users/kozo2/repos","events_url":"https://api.github.com/users/kozo2/events{/privacy}","received_events_url":"https://api.github.com/users/kozo2/received_events","type":"User","site_admin":false},"labels":[{"id":39357289,"url":"https://api.github.com/repos/rdkit/rdkit/labels/bug","name":"bug","color":"fc2929","default":true}],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":{"url":"https://api.github.com/repos/rdkit/rdkit/milestones/11","html_url":"https://github.com/rdkit/rdkit/milestone/11","labels_url":"https://api.github.com/repos/rdkit/rdkit/milestones/11/labels","id":1381612,"number":11,"title":"2016_03_1","description":"","creator":{"login":"greglandrum","id":540511,"avatar_url":"https://avatars2.githubusercontent.com/u/540511?v=3","gravatar_id":"","url":"https://api.github.com/users/greglandrum","html_url":"https://github.com/greglandrum","followers_url":"https://api.github.com/users/greglandrum/followers","following_url":"https://api.github.com/users/greglandrum/following{/other_user}","gists_url":"https://api.github.com/users/greglandrum/gists{/gist_id}","starred_url":"https://api.github.com/users/greglandrum/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/greglandrum/subscriptions","organizations_url":"https://api.github.com/users/greglandrum/orgs","repos_url":"https://api.github.com/users/greglandrum/repos","events_url":"https://api.github.com/users/greglandrum/events{/privacy}","received_events_url":"https://api.github.com/users/greglandrum/received_events","type":"User","site_admin":false},"open_issues":0,"closed_issues":114,"state":"closed","created_at":"2015-10-28T15:10:25Z","updated_at":"2016-05-30T07:18:19Z","due_on":"2016-03-30T07:00:00Z","closed_at":"2016-04-20T04:46:17Z"},"comments":8,"created_at":"2016-02-11T01:12:32Z","updated_at":"2017-03-22T14:14:16Z","closed_at":"2016-03-04T15:59:10Z","body":"I tried to build and import rdkit with Python.\nBut there was an error like this.\n\n```\n>>> from rdkit import Chem\nTraceback (most recent call last):\n  File \"<stdin>\", line 1, in <module>\n  File \"/root/rdkit-Release_2015_09_2/rdkit/Chem/__init__.py\", line 18, in <module>\n    from rdkit import rdBase\nImportError: /root/rdkit-Release_2015_09_2/lib/libRDBoost.so.1: undefined symbol: _ZN5boost6python23throw_error_already_setEv\n```\n\nYou can reproduce this with\n\n```\ndocker run -it kozo2/rdkit-notebook bash\ncd\nPYTHONPATH=~/rdkit-Release_2015_09_2/ LD_LIBRARY_PATH=~/rdkit-Release_2015_09_2/lib python\n>>> from rdkit import Chem\nTraceback (most recent call last):\n  File \"<stdin>\", line 1, in <module>\n  File \"/root/rdkit-Release_2015_09_2/rdkit/Chem/__init__.py\", line 18, in <module>\n    from rdkit import rdBase\nImportError: /root/rdkit-Release_2015_09_2/lib/libRDBoost.so.1: undefined symbol: _ZN5boost6python23throw_error_already_setEv\n```\n\nThe docker file is https://github.com/kozo2/rdkit-notebook/blob/master/Dockerfile\n"},"comment":{"url":"https://api.github.com/repos/rdkit/rdkit/issues/comments/288411348","html_url":"https://github.com/rdkit/rdkit/issues/762#issuecomment-288411348","issue_url":"https://api.github.com/repos/rdkit/rdkit/issues/762","id":288411348,"user":{"login":"jt-swanson","id":26585064,"avatar_url":"https://avatars2.githubusercontent.com/u/26585064?v=3","gravatar_id":"","url":"https://api.github.com/users/jt-swanson","html_url":"https://github.com/jt-swanson","followers_url":"https://api.github.com/users/jt-swanson/followers","following_url":"https://api.github.com/users/jt-swanson/following{/other_user}","gists_url":"https://api.github.com/users/jt-swanson/gists{/gist_id}","starred_url":"https://api.github.com/users/jt-swanson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jt-swanson/subscriptions","organizations_url":"https://api.github.com/users/jt-swanson/orgs","repos_url":"https://api.github.com/users/jt-swanson/repos","events_url":"https://api.github.com/users/jt-swanson/events{/privacy}","received_events_url":"https://api.github.com/users/jt-swanson/received_events","type":"User","site_admin":false},"created_at":"2017-03-22T14:14:16Z","updated_at":"2017-03-22T14:14:16Z","body":"I have a couple 'legacy' Linux systems. They run RedHat RHEL 5. I've been using them mostly for running scikit-learn. I have Anaconda 4.3.1 installed. That's all been working fine. I've been running rdkit on Windows. I am using Anaconda 4.2.0 there. When I installed rdkit on Windows through conda, it also installed 2016.03.1. On Windows rdkit is quite happily running. But if I could get it running on Linux, I could use it along with some other (legacy) software that also has a Python interface, but doesn't run on Windows.\r\n\r\nI installed rdkit using\r\n\r\nconda install -c rdkit rdkit\r\n\r\nit reverted a lot of packages back to older versions to install rdkit, including boost.\r\n\r\nI also tried\r\n\r\nconda install -c rdkit boost=1.56.0\r\n\r\nbut conda just came back and said that was what was installed.\r\n\r\nI can run\r\n\r\nconda install -c rdkit rdkit=xxxx.xx\r\n\r\nbut the only one I found to work was 2016.03, though the anaconda repository claims the current version is 2016.09."}}
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