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me_q_sum.py
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# coding=utf-8
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# Copyright 2020 The HuggingFace Datasets Authors and the current dataset script contributor.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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"""Covid Dialog dataset in English and Chinese"""
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import copy
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import os
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import re
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import textwrap
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import datasets
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# BibTeX citation
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_CITATION = """\
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@Inproceedings{MeQSum,
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author = {Asma {Ben Abacha} and Dina Demner-Fushman},
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title = {On the Summarization of Consumer Health Questions},
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booktitle = {Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics, ACL 2019,
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Florence, Italy, July 28th - August 2},
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year = {2019},
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abstract = {Question understanding is one of the main challenges in question answering. In real world applications,
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users often submit natural language questions that are longer than needed and include peripheral information that
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increases the complexity of the question, leading to substantially more false positives in answer retrieval. In this
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paper, we study neural abstractive models for medical question summarization. We introduce the MeQSum corpus of
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1,000 summarized consumer health questions. We explore data augmentation methods and evaluate state-of-the-art
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neural abstractive models on this new task. In particular, we show that semantic augmentation from question datasets
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improves the overall performance, and that pointer-generator networks outperform sequence-to-sequence attentional
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models on this task, with a ROUGE-1 score of 44.16%. We also present a detailed error analysis and discuss
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directions for improvement that are specific to question summarization.}}
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"""
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# Official description of the dataset
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_DESCRIPTION = textwrap.dedent(
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"""
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From "On the Summarization of Consumer Health Questions" (Abacha et al.), MeQSum is a corpus of 1,000 summarized
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consumer health questions.
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The following is an example from the dataset:
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Question:
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SUBJECT: inversion of long arm chromasome7 MESSAGE: My son has been diagnosed with inversion of long arm
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chromasome 7 and down syndrome . please could you give me information on the chromasome 7 please because
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our doctors have not yet mentioned it
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Summary:
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Where can I find information on chromosome 7?
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"""
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)
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# Link to an official homepage for the dataset here
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_HOMEPAGE = "https://worksheets.codalab.org/rest/bundles/0xd98a53314314445b96b4d703bb2d8c8c/contents/blob/"
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_LICENSE = ""
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import datasets
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import os
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import json
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class MeQSum(datasets.GeneratorBasedBuilder):
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VERSION = datasets.Version("1.0.0")
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BUILDER_CONFIGS = [datasets.BuilderConfig(name="default", version=datasets.Version("1.0.0"), description=_DESCRIPTION)]
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def _info(self):
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features = datasets.Features(
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{
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"query": datasets.Value("string"),
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"answer": datasets.Value("string"),
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}
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)
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return datasets.DatasetInfo(
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description=f"Covid Dialogue dataset, as preprocessed and shuffled in HELM",
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features=features,
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homepage=_HOMEPAGE,
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license=_LICENSE,
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citation=_CITATION,
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)
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def _split_generators(self, dl_manager):
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test_target = dl_manager.download("test.source")
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test_source = dl_manager.download("test.source")
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train_source = dl_manager.download("train.source")
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train_target = dl_manager.download("train.target")
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val_source = dl_manager.download("val.source")
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val_target = dl_manager.download("val.target")
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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gen_kwargs={"target": train_target, "source": train_source},
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),
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datasets.SplitGenerator(
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name=datasets.Split.VALIDATION,
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gen_kwargs={"target": val_target, "source": val_source},
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),
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datasets.SplitGenerator(
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name=datasets.Split.TEST,
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gen_kwargs={"target": test_target, "source": test_source},
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),
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]
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# method parameters are unpacked from `gen_kwargs` as given in `_split_generators`
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def _generate_examples(self, source, target):
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with open(source, encoding="utf-8") as f_source:
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with open(target, encoding="utf-8") as f_target:
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for idx, (s, t) in enumerate(zip(f_source, f_target)):
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yield idx, {"query": s, "answer": t}
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