viterbi algorithm used hidden markov models particularly part speech tagging earley algorithm type chart parser needleman wunsch algorithm algorithms used bioinformatics including sequence alignment structural alignment rna structure prediction ref name eddy floyd 's pairs shortest path algorithm optimizing order chain matrix multiplication pseudo polynomial time algorithms subset sum knapsack partition problems dynamic time warping algorithm computing global distance two time series selinger aka system r algorithm relational database query optimization de boor algorithm evaluating b spline curves duckworth lewis method resolving
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