title: Getting ATLAS 3.10.0 compiled on Windows 7 64
body: <p>I'm having some difficulty compiling ATLAS on Windows 7 64-bit and any help would be appreciated! I'm trying to link it to lapack-3.4.1.</p>
  
  <p>The command I'm using in Cygwin is:</p>
  
  <pre><code>../ATLAS/configure -D c -DWALL --with-netlib-lapack-tarfile=../lapack-3.4.1.tgz -b 64 -Si archdef 0 -Ss ADdir ../ATLAS/WINAD
  </code></pre>
  
  <p>The output I get is:</p>
  
  <pre><code>make: `xconfig' is up to date.
  ./xconfig -d s /f/Coursework/Code/python/compile/built/../ATLAS/ -d b /f/Coursework/Code/python/compile/built  -D c -DWALL -Si lapackref 1 -b 64 -Si archdef 0 -Ss ADdir ../ATLAS/WINAD
  gcc.exe: error: /f/Coursework/Code/python/compile/built/../ATLAS//CONFIG/src/probe_asm.c: No such file or directory
  gcc.exe: fatal error: no input files
  compilation terminated.
  make: *** [probe_asm.o] Error 1
  gcc.exe: error: /f/Coursework/Code/python/compile/built/../ATLAS//CONFIG/src/probe_vec.c: No such file or directory
  gcc.exe: fatal error: no input files
  compilation terminated.
  make: *** [probe_vec.o] Error 1
  gcc.exe: error: /f/Coursework/Code/python/compile/built/../ATLAS//CONFIG/src/probe_arch.c: No such file or directory
  gcc.exe: fatal error: no input files
  compilation terminated.
  make: *** [probe_arch.o] Error 1
  gcc.exe: error: /f/Coursework/Code/python/compile/built/../ATLAS//CONFIG/src/probe_arch.c: No such file or directory
  gcc.exe: fatal error: no input files
  compilation terminated.
  make: *** [probe_arch.o] Error 1
  gcc.exe: error: /f/Coursework/Code/python/compile/built/../ATLAS//CONFIG/src/probe_arch.c: No such file or directory
  gcc.exe: fatal error: no input files
  compilation terminated.
  make: *** [probe_arch.o] Error 1
  gcc.exe: error: /f/Coursework/Code/python/compile/built/../ATLAS//CONFIG/src/probe_arch.c: No such file or directory
  gcc.exe: fatal error: no input files
  compilation terminated.
  make: *** [probe_arch.o] Error 1
  gcc -I/f/Coursework/Code/python/compile/built/../ATLAS//CONFIG/include  -g -w -o xisgcc /f/Coursework/Code/python/compile/built/../ATLAS//CONFIG/src/IsGcc.c atlconf_misc.o
  gcc.exe: error: /f/Coursework/Code/python/compile/built/../ATLAS//CONFIG/src/IsGcc.c: No such file or directory
  Makefile:39: recipe for target `xisgcc' failed
  make: *** [xisgcc] Error 1
  
  OS configured as Win64 (9)
  
  Bad ASM value=0, res='NULL'
  
  Assembly configured as  (0)
  
  Bad VECFLAG value=0, res='NULL'
  
  Vector ISA Extension configured as   (0,0)
  
  Bad MACHTYPE value=0, res='NULL'
  
  Architecture configured as  UNKNOWN (0)
  
  Bad CPU MHZ value=0, res='NULL'
  
  Clock rate configured as 0Mhz
  
  Bad NCPU value=0, res='NULL'
  
  Maximum number of threads configured as  0
  Cannot detect CPU throttling.
  ERROR 2 IN SYSCMND: 'make IRun_comp args="-v 0 -o atlconf.txt -O 9 -A 0 -Si nof77 0 -V 0   -b 64"'
  xconfig exited with 2
  </code></pre>
  
  <p>Trying the same in the msys shell gives me:</p>
  
  <pre><code>make: `xconfig' is up to date.
  ./xconfig -d s /f/Coursework/Code/python/compile/built/../ATLAS/ -d b /f/Coursew
  ork/Code/python/compile/built  -D c -DWALL -Si lapackref 1 -b 64 -Si archdef 0 -
  Ss ADdir ../ATLAS/WINAD
  
  Bad OS value=0, res='NULL'
  
  OS configured as UNKNOWN (0)
  Assertion failed: iret, file f:/Coursework/Code/python/compile/built/../ATLAS//C
  ONFIG/src/config.c, line 602
  
  This application has requested the Runtime to terminate it in an unusual way.
  Please contact the application's support team for more information.
  xconfig exited with 3
  </code></pre>
  
  <p>The output of msysinfo is:</p>
  
  <pre><code>msysinfo-1.3: Send this to the MSYS support list:
  
  MSYS 1.0.17(0.48/3/2) 2011-04-24 23:39 i686 unknown; targ=MINGW3
  GNU bash, version 3.1.17(1)-release (i686-pc-msys); ENV=.profile
  GNU Make 3.81This program built for i686-pc-msys; MAKE_MODE=unix
  gcc.exe (GCC) 4.7.0; targ=MINGW32
  GNU ld (GNU Binutils) 2.22
  224 2011-04-25 00:42:29.000000000 +0100 /bin/msys-1.0.dll
  659 2010-04-14 15:15:29.000000000 +0100 /bin/msys-archive-2.dll
  048 2011-09-10 07:40:32.000000000 +0100 /bin/msys-bz2-1.dll
  240 2010-01-29 01:32:57.000000000 +0000 /bin/msys-crypt-0.dll
  448 2010-04-14 23:32:54.000000000 +0100 /bin/msys-crypto-1.0.0.d
  840 2010-01-29 02:06:29.000000000 +0000 /bin/msys-expat-1.dll
  992 2010-01-29 01:49:36.000000000 +0000 /bin/msys-gdbm-3.dll
  264 2010-01-29 01:49:36.000000000 +0000 /bin/msys-gdbm_compat-3.
  548 2010-05-04 03:04:46.000000000 +0100 /bin/msys-gmp-10.dll
  424 2010-05-08 20:26:27.000000000 +0100 /bin/msys-guile-17.dll
  112 2010-05-08 20:26:27.000000000 +0100 /bin/msys-guile-srfi-srf
  680 2010-05-08 20:26:27.000000000 +0100 /bin/msys-guile-srfi-srf
  l
  680 2010-05-08 20:26:27.000000000 +0100 /bin/msys-guile-srfi-srf
  752 2010-05-08 20:26:27.000000000 +0100 /bin/msys-guile-srfi-srf
  680 2010-05-08 20:26:27.000000000 +0100 /bin/msys-guilereadline-
  904 2011-10-29 19:18:01.000000000 +0100 /bin/msys-iconv-2.dll
  128 2011-10-29 12:22:30.000000000 +0100 /bin/msys-intl-8.dll
  246 2010-09-26 06:04:09.000000000 +0100 /bin/msys-ltdl-7.dll
  288 2011-09-10 08:01:59.000000000 +0100 /bin/msys-lzma-5.dll
  248 2010-04-16 05:50:34.000000000 +0100 /bin/msys-magic-1.dll
  064 2010-02-01 22:22:06.000000000 +0000 /bin/msys-minires.dll
  544 2010-05-09 01:41:04.000000000 +0100 /bin/msys-opts-25.dll
  608 2011-04-27 05:23:31.000000000 +0100 /bin/msys-perl5_8.dll
  327 2010-04-28 00:40:27.000000000 +0100 /bin/msys-popt-0.dll
  192 2010-02-01 22:29:13.000000000 +0000 /bin/msys-regex-1.dll
  544 2010-04-14 23:32:54.000000000 +0100 /bin/msys-ssl-1.0.0.dll
  864 2010-02-01 01:44:06.000000000 +0000 /bin/msys-termcap-0.dll
  888 2010-02-01 21:40:02.000000000 +0000 /bin/msys-xml2-2.dll
  920 2012-05-14 05:29:50.000000000 +0100 /bin/msys-z.dll
  88 2010-04-29 19:18:53.000000000 +0100 /bin/make.exe
  798 2012-03-31 18:24:11.000000000 +0100 /mingw/bin/gcc.exe
  502 2011-11-30 15:20:43.000000000 +0000 /mingw/bin/ld.exe
  HOME=/c/Users/Folcon
  Sysname=MINGW32_NT-6.1  OSTYPE=msys  TERM=cygwin
  PATH=.:/usr/local/bin:/mingw/bin:/bin:/c/Program Files (x86)/MiK
  TeX 2.9/miktex/bin:/c/Windows/system32:/c/Windows:/c/Windows/Sys
  tem32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/c/Progra
  m Files (x86)/ATI Technologies/ATI.ACE/Core-Static:/c/Program Fi
  les (x86)/Git/cmd:/c/Program Files (x86)/Aspell/bin:/c/Program F
  iles (x86)/gs/gs9.00/bin:/c/msys/gnuwin32/bin:/mingw/bin:/c/Prog
  ram Files (x86)/Java/jdk1.6.0_21/bin:/c/Program Files (x86)/Emac
  s/emacs/bin:/c/Python25/:/c/Program Files (x86)/TortoiseHg/:/c/P
  rogram Files (x86)/Calibre2/:/c/lein:/c/mvn/bin:/c/Program Files
  /TortoiseGit/bin:/c/Users/Folcon/.lein/bin:/c/Windows/System32:/
  c/Program Files (x86)/Haskell/bin:/c/ghc/ghc-6.12.3/bin:/c/Progr
  am Files (x86)/Google/google_appengine/:/c/Python26:/c/Python26/
  DLLs:/c/Python26/Scripts:/c/Python26/Lib/site-packages/PyQt4:/c/
  Python26/gnuplot/bin:/c/Python26/Lib/site-packages/vtk:/f/Progra
  m Files (x86)/pythonxy/console:/f/Program Files (x86)/pythonxy/S
  ciTE-2.21:/f/Program Files (x86)/pythonxy/mingw/bin:/c/Users/Fol
  con/.lein/bin:/f/C/Program Files (x86)/Git/bin:/cygdrive/c/Progr
  am Files (x86)/Java/jdk1.6.0_21/bin:/cygdrive/c/lein:/c/mvn/bin:
  /cygdrive/c/Users/Folcon/.lein/bin:/cygdrive/c/Program Files (x8
  6)/Haskell/bin:/cygdrive/c/ghc/ghc-6.12.3/bin:/cygdrive/c/Python
  26:/cygdrive/c/Python26/DLLs:/cygdrive/c/Python26/Scripts:/cygdr
  ive/c/Python26/Lib/site-packages/PyQt4:/cygdrive/c/Python26/gnup
  lot/bin:/cygdrive/c/Python26/Lib/site-packages/vtk:/cygdrive/c/U
  sers/Folcon/.lein/bin:/cygdrive/f/C/Program Files (x86)/Git/bin
  $ ls -tx /f/Coursework/Code/python/compile/built
  config1.out   atlcomp.txt     Makefile    xprobe_OS.exe*
  xconfig.exe*  atlconf_misc.o  probe_OS.o
  </code></pre>