title: Atom's beautify package not installing
body: <p>I am using atom editor on Ubuntu 18.04 LTS, and the beautify package was working fine. Then, I tried to update it and it failed. So, I tried to uninstall it and reinstall using the package manager in the atom text editor and this error showed up:</p>
  
  <pre><code>Installing “atom-beautify@0.33.0” failed.Hide output…
  
  npm WARN deprecated graceful-fs@2.0.3: please upgrade to graceful-fs 4 for compatibility with current and future versions of Node.js
  npm WARN deprecated minimatch@0.2.14: Please update to minimatch 3.0.2 or higher to avoid a RegExp DoS issue
  npm WARN deprecated minimatch@0.3.0: Please update to minimatch 3.0.2 or higher to avoid a RegExp DoS issue
  npm WARN deprecated @types/commander@2.12.2: This is a stub types definition for commander (https://github.com/tj/commander.js). commander provides its own type definitions, so you don't need @types/commander installed!
  npm WARN deprecated jscs-preset-wikimedia@1.0.1: Deprecated in favour of eslint-config-wikimedia. -- https://phabricator.wikimedia.org/T118941
  npm WARN deprecated nomnom@1.8.1: Package no longer supported. Contact support@npmjs.com for more info.
  npm ERR! Linux 4.15.0-33-generic
  npm ERR! argv "/usr/share/atom/resources/app/apm/bin/node" "/usr/share/atom/resources/app/apm/node_modules/npm/bin/npm-cli.js" "--globalconfig" "/home/suraj/.atom/.apm/.apmrc" "--userconfig" "/home/suraj/.atom/.apmrc" "install" "/tmp/d-11882-11505-6pr0wo.9rpchumcxr/package.tgz" "--runtime=electron" "--target=1.7.15" "--arch=x64" "--global-style"
  npm ERR! node v6.9.5
  npm ERR! npm  v3.10.10
  npm ERR! code EREADFILE
  
  npm ERR! Error extracting /home/suraj/.atom/.apm/marko/4.13.3/package.tgz archive: ENOENT: no such file or directory, open '/home/suraj/.atom/.apm/marko/4.13.3/package.tgz'
  npm ERR! 
  npm ERR! If you need help, you may report this error at:
  npm ERR!     &lt;https://github.com/npm/npm/issues&gt;
  
  npm ERR! Please include the following file with any support request:
  npm ERR!     /tmp/apm-install-dir-11882-11505-1xp4stp.i1sk7yzaor/npm-debug.log
  </code></pre>
  
  <p>Later, I tried to install it manually over the terminal using these commands:</p>
  
  <pre><code>cd /home/my_username/.atom/.apm/marko
  apm install atom-beautify
  </code></pre>
  
  <p>And this error showed up:</p>
  
  <pre><code>Installing atom-beautify to /home/suraj/.atom/packages ✗
  
  npm WARN deprecated graceful-fs@2.0.3: please upgrade to graceful-fs 4 for compatibility with current and future versions of Node.js
  npm WARN deprecated minimatch@0.2.14: Please update to minimatch 3.0.2 or higher to avoid a RegExp DoS issue
  npm WARN deprecated minimatch@0.3.0: Please update to minimatch 3.0.2 or higher to avoid a RegExp DoS issue
  npm WARN deprecated @types/commander@2.12.2: This is a stub types definition for commander (https://github.com/tj/commander.js). commander provides its own type definitions, so you don't need @types/commander installed!
  npm WARN deprecated jscs-preset-wikimedia@1.0.1: Deprecated in favour of eslint-config-wikimedia. -- https://phabricator.wikimedia.org/T118941
  npm WARN deprecated nomnom@1.8.1: Package no longer supported. Contact support@npmjs.com for more info.
  npm ERR! Linux 4.15.0-33-generic
  npm ERR! argv "/usr/share/atom/resources/app/apm/bin/node" "/usr/share/atom/resources/app/apm/node_modules/npm/bin/npm-cli.js" "--globalconfig" "/home/suraj/.atom/.apm/.apmrc" "--userconfig" "/home/suraj/.atom/.apmrc" "install" "/tmp/d-11882-10844-9qhjii.bzpnuhm2t9/package.tgz" "--runtime=electron" "--target=1.7.15" "--arch=x64" "--global-style"
  npm ERR! node v6.9.5
  npm ERR! npm  v3.10.10
  npm ERR! code EREADFILE
  
  npm ERR! Error extracting /home/suraj/.atom/.apm/marko/4.13.3/package.tgz archive: ENOENT: no such file or directory, open '/home/suraj/.atom/.apm/marko/4.13.3/package.tgz'
  npm ERR! 
  npm ERR! If you need help, you may report this error at:
  npm ERR!     &lt;https://github.com/npm/npm/issues&gt;
  
  npm ERR! Please include the following file with any support request:
  npm ERR!     /tmp/apm-install-dir-11882-10844-lpmvk7.f7mbo6r/npm-debug.log
  </code></pre>
  
  <p>Please help</p>