updated format and data

annotations_parser.py

@@ -9,8 +9,8 @@ def parse_annotated_text(text):
     # This variable will keep track of the number of characters removed
     chars_removed = 0
 
-    # This will store the positions of the entities in the original text
-    positions_in_original_text = []
+    # This will store the spans of the entities in the original text
+    spans_in_original_text = []
 
     # Buffer to store content without annotations
     buffer = []
@@ -40,12 +40,12 @@ def parse_annotated_text(text):
         buffer.append(text[last_end:start])
         buffer.append(entity)
 
-        # Calculate the start and end positions in the original text
+        # Calculate the start and end spans in the original text
         original_start = start - chars_removed
         original_end = original_start + len(entity)
         
-        # Store the positions
-        positions_in_original_text.append((original_start, original_end))
+        # Store the spans
+        spans_in_original_text.append((original_start, original_end))
         
         # update the chars_removed counter
         chars_removed += len(full_match) - len(entity)
@@ -61,7 +61,7 @@ def parse_annotated_text(text):
 
     return {
         'text': content_without_annotations,
-        'positions': positions_in_original_text,
+        'spans': spans_in_original_text,
         'labels': labels
     }
 
@@ -99,7 +99,7 @@ def load_yedda_annotations(directory):
                 'file': filename, 
                 'annotated_text': content, 
                 'text': parsed['text'],
-                'positions': parsed['positions'],
+                'spans': parsed['spans'],
                 'labels': parsed['labels'],
             }
             all_annotations.append(file_annotations)
@@ -111,7 +111,7 @@ def convert_to_ann(annotatations):
     text = annotatations['text']
     buffer = []
     i = 0
-    for (j_start, j_end), label in zip(annotatations['positions'], annotatations['labels']):
+    for (j_start, j_end), label in zip(annotatations['spans'], annotatations['labels']):
 
         buffer += text[i:j_start]
         buffer += [f'[@{text[j_start:j_end]}#{label}*]']
@@ -133,8 +133,8 @@ if __name__ == '__main__':
         print('File:', file_annotation['file'])
         print('Text[:100]:', repr(file_annotation['text'][:100]))
         print('Number of labels:', len(file_annotation['labels']))
-        assert len(file_annotation['labels']) == len(file_annotation['positions'])
-        print('Average labeled sentence length:', sum(end-start for start,end in file_annotation['positions']) / len(file_annotation['positions']))
+        assert len(file_annotation['labels']) == len(file_annotation['spans'])
+        print('Average labeled sentence length:', sum(end-start for start,end in file_annotation['spans']) / len(file_annotation['spans']))
         print('--------------------------------')
     
     print('Total number of files:', len(annotations))