diff --git a/complex_traits_matched_9/AUPRC_by_chrom/3_prime_UTR_variant/GPN_final_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/3_prime_UTR_variant/GPN_final_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..eedca786bbb3c39dfb6596271932f14a7ba95d74
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/3_prime_UTR_variant/GPN_final_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,19 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/CADD.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/CADD.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..99320b288f902ebca00926d90e95d16b64140bea
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/CADD.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..ebab55e88b0f1e7e9897eb6709f96cda77960c55
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..c45c487a4d80c6370c10a8b419c7ff8ac02f7712
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..4780405d746a1db5b23bb7e5889c2f050c956e57
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Borzoi_L2_L2.plus.all.csv
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+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..0e8f49a62db83e5e21372155ae249a2cce46e18f
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/CADD.plus.RawScore.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..0d26dc57d9ed897945b3b452ce36ae94cae609b6
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/CADD.plus.RawScore.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..62ade430ad13382459650903f6ab854df7376dd2
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..59793f272b001488f0d7d73ef0afa4d81b11b9f9
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus_Embeddings.minus.inner_product.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..29d6378d2dc689a4ec429c9042022a70a2c4f121
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus_Embeddings.plus.euclidean_distance.csv
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new file mode 100644
index 0000000000000000000000000000000000000000..84f8600d1ec7a44295326f3a91b9d2ad4a0e842d
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA_LLR.minus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA_LLR.minus.score.csv
new file mode 100644
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA_absLLR.plus.score.csv
new file mode 100644
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new file mode 100644
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new file mode 100644
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/HyenaDNA.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/HyenaDNA.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..baed759f8ab61f6162e578cac07d3b900647a05f
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/HyenaDNA.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/HyenaDNA_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/HyenaDNA_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..73a71b6247251a1f8c7d68d79bb65435d703eefd
--- /dev/null
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..136f07e18a120200f5cffe438f91cc9a33f36720
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..ca986271a74d25dfa43617542e627b8079dbd295
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+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer_Embeddings.minus.inner_product.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..e3c66a1f324f3f550262b77d90923ff4edc2f9e9
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Sei.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Sei.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..4a94e4f91e454498505de34e4610a9cd0c33dc97
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Sei.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Sei.plus.seqclass_max_absdiff.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Sei.plus.seqclass_max_absdiff.csv
new file mode 100644
index 0000000000000000000000000000000000000000..1609f49567bc3e5b26d6b15110923055196010f5
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Sei.plus.seqclass_max_absdiff.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..9ec6f27a24def57fb44a4b1ecd0600c2d7cfe231
--- /dev/null
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..df91260d15699aa8f35853e4935a53b7e3bf4421
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/Borzoi_L2_L2.plus.all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..806784068fb9ede859c426fed94f7776e7a427d2
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..e599f5353a380af167f57ebcba9c1fbd77d82a1b
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/CADD.plus.RawScore.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..607cf243855fea5a96407148f489bd962320649b
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/CADD.plus.RawScore.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..522cfd7b02c7e2dbdd74353a8a0d75d9fa2c65d3
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
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+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/GPN-MSA_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/GPN-MSA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..de628b4370d7cd3706e2db5974af5a3231b842a7
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/no_eqtl_overlap/GPN-MSA_absLLR.plus.score.csv
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+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/non_coding_transcript_exon_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/non_coding_transcript_exon_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..9bb25bb82692c9fbefd268d7a2619ed7dc8cf27b
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/non_coding_transcript_exon_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/non_coding_transcript_exon_variant/GPN_final_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/non_coding_transcript_exon_variant/GPN_final_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..fce696a0b13c526b4aa51ca40f451e91493c4173
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/non_coding_transcript_exon_variant/GPN_final_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,19 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_proximal/GPN_final.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_proximal/GPN_final.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..74755591ecfc48507e699da24834fa0d0ec5357a
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_proximal/GPN_final.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,21 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_proximal/GPN_final_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_proximal/GPN_final_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..f352cda87a10d3723a25fb5d1aaa6266cb3085c0
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_proximal/GPN_final_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,21 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..60f65612a5e36827268f464cca2de3baadf0dd46
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/Borzoi.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..ce569dd22e8381a848d5b350dd7054f66788c635
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/CADD.plus.RawScore.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..faf336377696e9989d9b8649deda6342753e35f4
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/CADD.plus.RawScore.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..9055d05a5fb2391fa94a8ddcbc329e73ab63d122
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/Borzoi.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..467cb18da049bd1f082488bf803aa3b18fe6f9cf
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/Borzoi_L2_L2.plus.all.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..96791192583294bc2bfd7f635c62aec12bb0f703
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/CADD.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/CADD.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..0cbc34ede0aa215ae0401657bd8a4a54d219e85e
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/CADD.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/CADD.plus.RawScore.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..142ce27c8f853568339671a341e3a7fe795f321d
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/CADD.plus.RawScore.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b418c26a0eae8ddfc910083050889b8a88c7ba0c
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/GPN-MSA_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/GPN-MSA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..064c96b72275926d33d4fb70c282d5938863ca90
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.999/GPN-MSA_absLLR.plus.score.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..240b03847f8c7319941b57d9da49872fbd35b256
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/Borzoi.LogisticRegression.chrom.subset_from_all.csv
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+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..fb430e86290b1d8ec473ea97d4ceef13c1fe3e78
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/Borzoi_L2_L2.plus.all.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..cc32bfa7db65bbf6a375a8a0725d28c7d932cfd7
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/CADD.plus.RawScore.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..259975c484f8710363f71262c05569727533ca90
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/CADD.plus.RawScore.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/GPN-MSA_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/GPN-MSA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..2ce543f82c61c2cdc36fc4f6e3386afb15e4e46b
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/GPN-MSA_absLLR.plus.score.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..4a701caae5f1923738fb11f01673a13fbc673f80
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/Borzoi.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..1027583e151c4a42835d58ca3f0fd030ceb3aab6
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/Borzoi_L2_L2.plus.all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..9e4e9ab0a13b967f72b87e37600a8b0b045731bf
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/CADD.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/CADD.LogisticRegression.chrom.subset_from_all.csv
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index 0000000000000000000000000000000000000000..3b0750aa95b2c96777da3c8f71c3421730141ec8
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/CADD.plus.RawScore.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/CADD.plus.RawScore.csv
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index 0000000000000000000000000000000000000000..a4c861020852108bb039afd180b0708b08896652
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Borzoi.LogisticRegression.chrom.csv
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index 0000000000000000000000000000000000000000..cc0fcae08bf5f51b85da8a459e19393f1e1587ce
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_LLR.minus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/Caduceus_LLR.minus.score.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pleiotropy_yes/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom_weighted_average/pleiotropy_yes/Borzoi_L2_L2.plus.all.csv
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