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  1. complex_traits_matched_9/AUPRC_by_chrom/3_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv +19 -0
  2. complex_traits_matched_9/AUPRC_by_chrom/5_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv +20 -0
  3. complex_traits_matched_9/AUPRC_by_chrom/5_prime_UTR_variant/GPN_final_Embeddings.plus.euclidean_distance.csv +20 -0
  4. complex_traits_matched_9/AUPRC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv +23 -0
  5. complex_traits_matched_9/AUPRC_by_chrom/all/Borzoi_L2_L2.plus.all.csv +23 -0
  6. complex_traits_matched_9/AUPRC_by_chrom/all/CADD+Borzoi.LogisticRegression.chrom.csv +23 -0
  7. complex_traits_matched_9/AUPRC_by_chrom/all/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.csv +23 -0
  8. complex_traits_matched_9/AUPRC_by_chrom/all/CADD+GPN-MSA.LogisticRegression.chrom.csv +23 -0
  9. complex_traits_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv +23 -0
  10. complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus.LogisticRegression.chrom.csv +23 -0
  11. complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.minus.inner_product.csv +23 -0
  12. complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.euclidean_distance.csv +23 -0
  13. complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_LLR.minus.score.csv +23 -0
  14. complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_absLLR.plus.score.csv +23 -0
  15. complex_traits_matched_9/AUPRC_by_chrom/all/Enformer.LogisticRegression.chrom.csv +23 -0
  16. complex_traits_matched_9/AUPRC_by_chrom/all/Enformer_L2_L2.plus.all.csv +23 -0
  17. complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv +23 -0
  18. complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv +23 -0
  19. complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv +23 -0
  20. complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv +23 -0
  21. complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv +23 -0
  22. complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv +23 -0
  23. complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_absLLR.plus.score.csv +23 -0
  24. complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final.LogisticRegression.chrom.csv +23 -0
  25. complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.minus.inner_product.csv +23 -0
  26. complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.plus.cosine_distance.csv +23 -0
  27. complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.plus.euclidean_distance.csv +23 -0
  28. complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_LLR.minus.score.csv +23 -0
  29. complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_absLLR.plus.score.csv +23 -0
  30. complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv +23 -0
  31. complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv +23 -0
  32. complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv +23 -0
  33. complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv +23 -0
  34. complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_LLR.minus.score.csv +23 -0
  35. complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv +23 -0
  36. complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv +23 -0
  37. complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv +23 -0
  38. complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv +23 -0
  39. complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv +23 -0
  40. complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv +23 -0
  41. complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv +23 -0
  42. complex_traits_matched_9/AUPRC_by_chrom/all/Sei.LogisticRegression.chrom.csv +23 -0
  43. complex_traits_matched_9/AUPRC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv +23 -0
  44. complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final.LogisticRegression.chrom.subset_from_all.csv +23 -0
  45. complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final_Embeddings.plus.euclidean_distance.csv +23 -0
  46. complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/Borzoi_L2_L2.plus.all.csv +23 -0
  47. complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/CADD.LogisticRegression.chrom.subset_from_all.csv +23 -0
  48. complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv +23 -0
  49. complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/GPN-MSA_absLLR.plus.score.csv +23 -0
  50. complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/CADD.LogisticRegression.chrom.subset_from_all.csv +23 -0
complex_traits_matched_9/AUPRC_by_chrom/3_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv ADDED
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complex_traits_matched_9/AUPRC_by_chrom/5_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv ADDED
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complex_traits_matched_9/AUPRC_by_chrom/5_prime_UTR_variant/GPN_final_Embeddings.plus.euclidean_distance.csv ADDED
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complex_traits_matched_9/AUPRC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv ADDED
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complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv ADDED
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complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv ADDED
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complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv ADDED
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complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv ADDED
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complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_absLLR.plus.score.csv ADDED
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complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final.LogisticRegression.chrom.csv ADDED
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complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.minus.inner_product.csv ADDED
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complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.plus.cosine_distance.csv ADDED
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1
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complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.plus.euclidean_distance.csv ADDED
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1
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complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_LLR.minus.score.csv ADDED
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1
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complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_absLLR.plus.score.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
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complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
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complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
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complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
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complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
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complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_LLR.minus.score.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
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complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
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complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
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complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
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complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
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complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
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complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
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complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
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complex_traits_matched_9/AUPRC_by_chrom/all/Sei.LogisticRegression.chrom.csv ADDED
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1
+ chrom,n,Model,AUPRC
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complex_traits_matched_9/AUPRC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
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complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final.LogisticRegression.chrom.subset_from_all.csv ADDED
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1
+ chrom,n,Model,AUPRC
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complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final_Embeddings.plus.euclidean_distance.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
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complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/Borzoi_L2_L2.plus.all.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
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complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/CADD.LogisticRegression.chrom.subset_from_all.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
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complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
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+ 21,80,GPN-MSA.LogisticRegression.chrom.subset_from_all,0.18609570345023108
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+ 22,180,GPN-MSA.LogisticRegression.chrom.subset_from_all,0.3029030617330378
complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/GPN-MSA_absLLR.plus.score.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
2
+ 1,670,GPN-MSA_absLLR.plus.score,0.2234575571865059
3
+ 2,590,GPN-MSA_absLLR.plus.score,0.2248869704539049
4
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5
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6
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7
+ 6,570,GPN-MSA_absLLR.plus.score,0.18295067740146695
8
+ 7,340,GPN-MSA_absLLR.plus.score,0.270236651251911
9
+ 8,250,GPN-MSA_absLLR.plus.score,0.24651283406688085
10
+ 9,280,GPN-MSA_absLLR.plus.score,0.25849968528552825
11
+ 10,300,GPN-MSA_absLLR.plus.score,0.34356756390388354
12
+ 11,480,GPN-MSA_absLLR.plus.score,0.19477036236627981
13
+ 12,360,GPN-MSA_absLLR.plus.score,0.2758946401010386
14
+ 13,150,GPN-MSA_absLLR.plus.score,0.22859424277167067
15
+ 14,230,GPN-MSA_absLLR.plus.score,0.28696246971476946
16
+ 15,260,GPN-MSA_absLLR.plus.score,0.18551638563100176
17
+ 16,460,GPN-MSA_absLLR.plus.score,0.22303752694550455
18
+ 17,400,GPN-MSA_absLLR.plus.score,0.18795037559321878
19
+ 18,160,GPN-MSA_absLLR.plus.score,0.2498579578447251
20
+ 19,380,GPN-MSA_absLLR.plus.score,0.207870939937029
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+ 20,330,GPN-MSA_absLLR.plus.score,0.256580655227985
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+ 21,80,GPN-MSA_absLLR.plus.score,0.12807775781566105
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+ 22,180,GPN-MSA_absLLR.plus.score,0.2672184872430526
complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/CADD.LogisticRegression.chrom.subset_from_all.csv ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ chrom,n,Model,AUPRC
2
+ 1,690,CADD.LogisticRegression.chrom.subset_from_all,0.2855842028986838
3
+ 2,680,CADD.LogisticRegression.chrom.subset_from_all,0.2257981127490568
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5
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+ 5,420,CADD.LogisticRegression.chrom.subset_from_all,0.26286664812603233
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+ 7,360,CADD.LogisticRegression.chrom.subset_from_all,0.34906468192530976
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+ 10,390,CADD.LogisticRegression.chrom.subset_from_all,0.2580699253834983
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+ 18,190,CADD.LogisticRegression.chrom.subset_from_all,0.28296797426446363
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+ 20,420,CADD.LogisticRegression.chrom.subset_from_all,0.25627156377268245
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+ 22,240,CADD.LogisticRegression.chrom.subset_from_all,0.3314982914602221